Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 0.0e+00 1604.7 874 100.0
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 0.0e+00 1195.6 878 80.4
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 1.6e-254 883.2 929 61.9
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 1.1e-247 860.5 808 65.8
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 4.3e-143 513.1 906 44.9
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 1.1e-141 508.4 915 41.6
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 1.1e-127 461.8 954 40.1
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 5.3e-125 453.0 923 41.9
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 5.3e-125 453.0 923 41.9
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 3.1e-109 400.6 952 37.5
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 6.9e-109 399.4 981 36.8
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 4.5e-108 396.7 916 36.9
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 3.8e-107 393.7 988 35.7
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 7.2e-106 389.4 940 37.2
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 1.1e-103 382.1 1021 35.4
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.7e-102 378.3 962 35.7
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 1.7e-99 368.2 940 36.3
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 1.2e-97 362.1 955 35.2
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 2.1e-97 361.3 911 34.9
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 1.3e-94 352.1 904 36.2
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 3.7e-94 350.5 955 34.1
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 3.5e-92 344.0 897 34.8
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 2.7e-89 334.3 930 34.7
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 8.2e-86 322.8 943 32.6
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 6.5e-83 313.2 949 31.7
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 9.4e-82 309.3 939 34.9
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 1.6e-81 308.5 895 33.9
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 4.7e-81 307.0 938 34.2
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 1.4e-80 305.4 897 34.2
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.4e-80 305.4 924 33.5
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 6.7e-80 303.1 929 34.2
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 4.4e-79 300.4 926 33.0
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 5.7e-79 300.1 928 32.3
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 5.3e-77 293.5 909 33.6
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 1.6e-76 292.0 923 32.2
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 8.5e-75 286.2 887 32.8
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 4.2e-74 283.9 920 31.5
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 1.6e-73 282.0 953 32.8
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 2.6e-71 274.6 915 31.5
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 5.7e-71 273.5 937 32.6
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 8.3e-70 269.6 902 32.4
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 1.2e-68 265.8 928 33.6
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 2.0e-68 265.0 901 31.5
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 2.7e-68 264.6 908 31.7
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 1.0e-67 262.7 911 30.0
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 2.9e-67 261.2 950 30.5
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 8.6e-67 259.6 874 30.9
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 1.4e-64 252.3 968 30.8
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 1.4e-64 252.3 932 30.7
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 1.8e-64 251.9 901 30.5
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 2.3e-64 251.5 906 30.6
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 4.0e-64 250.8 929 30.0
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 8.9e-64 249.6 916 30.6
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 1.7e-62 245.4 958 30.7
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 6.3e-62 243.4 959 30.1
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 6.3e-62 243.4 947 32.0
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 1.4e-61 242.3 999 29.9
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 1.8e-61 241.9 950 31.7
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 4.5e-60 237.3 964 29.8
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 1.7e-59 235.3 902 27.9
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 3.3e-58 231.1 874 30.4
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 2.8e-57 228.0 929 31.0
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 1.4e-56 225.7 921 29.1
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 6.8e-56 223.4 974 30.0
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 2.0e-55 221.9 896 29.5
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.0e-55 221.9 874 29.9
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 2.2e-54 218.4 952 29.5
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 3.7e-54 217.6 937 29.6
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 6.4e-54 216.9 905 29.3
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 1.1e-53 216.1 934 28.3
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 1.4e-53 215.7 923 29.8
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 1.0e-51 209.5 937 30.5
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 2.3e-51 208.4 941 30.1
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 8.6e-51 206.5 933 30.7
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 1.2e-49 202.6 1009 28.6
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 1.1e-48 199.5 890 30.7
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 2.3e-48 198.4 883 28.1
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 3.1e-48 198.0 929 29.9
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 3.4e-47 194.5 919 28.9
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 2.2e-46 191.8 941 29.2
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 1.1e-45 189.5 935 27.5
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 1.1e-45 189.5 878 28.8
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 1.1e-45 189.5 878 28.8
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 1.9e-45 188.7 878 28.8
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 3.2e-45 188.0 920 28.2
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 7.0e-45 186.8 907 29.1
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 7.8e-44 183.3 291 43.6
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 1.3e-43 182.6 1004 27.9
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 1.5e-42 179.1 887 28.7
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 3.3e-42 177.9 934 27.3
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 5.6e-42 177.2 636 29.6
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 5.6e-42 177.2 933 29.7
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 9.5e-42 176.4 932 27.7
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 1.6e-41 175.6 916 26.7
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 2.1e-41 175.3 881 27.8
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 2.8e-41 174.9 901 30.0
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 3.6e-41 174.5 884 28.8
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 1.4e-40 172.6 919 27.3
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 5.8e-39 167.2 905 29.2
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 7.5e-39 166.8 920 27.0
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 8.3e-38 163.3 445 34.2
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 1.9e-37 162.2 833 28.2
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 4.1e-37 161.0 830 28.2
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 1.2e-36 159.5 865 27.1
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 1.2e-36 159.5 874 29.1
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 2.1e-36 158.7 890 28.0
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 3.9e-35 154.5 911 25.7
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 1.5e-34 152.5 830 27.7
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 7.3e-34 150.2 903 27.7
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 1.2e-33 149.4 876 27.1
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 2.1e-33 148.7 272 41.5
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 3.6e-33 147.9 878 27.7
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 1.1e-32 146.4 887 26.7
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 1.8e-32 145.6 904 25.8
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 6.8e-32 143.7 854 27.3
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 4.4e-31 141.0 950 25.3
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 4.4e-31 141.0 906 25.6
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 4.9e-30 137.5 137 62.8
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 9.2e-29 133.3 330 36.7
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 1.3e-25 122.9 828 25.5
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 1.6e-25 122.5 279 39.1
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 1.2e-23 116.3 873 26.2
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 1.1e-21 109.8 174 44.8
CAN.G289.65 Capsicum annuum HOM05D004628 ORTHO05D005166 2.3e-19 102.1 228 36.8
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 3.9e-19 101.3 269 34.9
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 5.1e-19 100.9 294 32.7
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 1.1e-18 99.8 912 23.2
ATR0767G029 Amborella trichopoda HOM05D004628 ORTHO05D005166 1.1e-16 93.2 816 26.0
CAN.G289.56 Capsicum annuum HOM05D004628 ORTHO05D005166 9.9e-15 86.7 170 38.8
Nn5g30859 Nelumbo nucifera HOM05D004628 ORTHO05D005166 2.2e-14 85.5 104 50.0
CAN.G289.57 Capsicum annuum HOM05D004628 ORTHO05D005166 2.9e-14 85.1 170 37.1
SEGI_16491 Sequoiadendron giganteum HOM05D004628 ORTHO05D005166 4.9e-14 84.3 983 25.3
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 4.9e-14 84.3 83 62.7
arahy.Tifrunner.gnm1.ann1.GD5ZZG Arachis hypogaea HOM05D004628 ORTHO05D005166 5.4e-13 80.9 241 34.0
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 7.1e-13 80.5 75 56.0
FAN09G3722 Fragaria x ananassa HOM05D004628 ORTHO05D005166 9.3e-13 80.1 90 51.1
Nitab4.5_0008331g0010 Nicotiana tabacum HOM05D004628 ORTHO05D005166 4.6e-12 77.8 206 36.4
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 4.6e-12 77.8 144 38.9
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 6.0e-12 77.4 436 30.5
CAN.G535.2 Capsicum annuum HOM05D004628 ORTHO05D005166 7.9e-12 77.0 127 40.2
FvH4_6g23772 Fragaria vesca HOM05D004628 ORTHO05D005166 1.0e-11 76.6 91 48.4
CAN.G1627.6 Capsicum annuum HOM05D004628 ORTHO05D005166 2.3e-11 75.5 90 57.8
Nn1g01808 Nelumbo nucifera HOM05D004628 ORTHO05D005166 9.6e-10 70.1 69 55.1
CSS0036998 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 1.6e-09 69.3 230 31.3
Zm00001eb217550 Zea mays HOM05D058439 ORTHO05D005166 2.8e-09 68.6 280 28.6
CSS0033280 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 3.7e-09 68.2 230 31.3
Gohir.A10G065000 Gossypium hirsutum HOM05D008208 ORTHO05D010143 1.1e-08 66.6 246 28.9
Gorai.011G070600 Gossypium raimondii HOM05D008208 ORTHO05D010143 1.1e-08 66.6 246 30.1
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 1.1e-08 66.6 225 32.4
BcaNung07335 Brassica carinata HOM05D004628 ORTHO05D005166 1.4e-08 66.2 81 53.1
PSO210G1301 Papaver somniferum HOM05D029104 ORTHO05D010143 1.8e-08 65.9 227 33.5
Dinv30429 Davidia involucrata HOM05D008208 ORTHO05D010143 3.1e-08 65.1 247 29.6
Duzib192G1063 Durio zibethinus HOM05D008208 ORTHO05D010143 9.0e-08 63.5 246 33.3
CAN.G1164.3 Capsicum annuum HOM05D009846 ORTHO05D002235 1.2e-07 63.2 149 38.9
CAN.G1627.4 Capsicum annuum HOM05D004628 ORTHO05D005166 1.2e-07 63.2 40 75.0
MD09G1201700 Malus domestica HOM05D008208 ORTHO05D010143 1.5e-07 62.8 244 33.2
Gohir.D10G066500 Gossypium hirsutum HOM05D008208 ORTHO05D010143 2.0e-07 62.4 259 29.0
CAN.G289.55 Capsicum annuum HOM05D004628 ORTHO05D005166 2.6e-07 62.0 295 29.5
Oeu002526.1 Olea europaea HOM05D008208 ORTHO05D010143 3.4e-07 61.6 206 31.1
GSVIVG01016967001 Vitis vinifera HOM05D000585 ORTHO05D001841 3.4e-07 61.6 229 33.6
Os03g0672400 Oryza sativa ssp. japonica HOM05D058439 ORTHO05D005166 4.5e-07 61.2 912 27.1
Sc10g0007610 Simmondsia chinensis HOM05D008208 ORTHO05D010143 5.8e-07 60.8 228 30.3
MBI01_g10116_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 1.7e-06 59.3 240 30.4
CANSAT56G0900 Cannabis sativa HOM05D008208 ORTHO05D010143 3.8e-06 58.2 197 31.0
CDE02G2770 Ceratophyllum demersum HOM05D046919 ORTHO05D043903 3.8e-06 58.2 246 28.5
MBI04_g07011_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 8.4e-06 57.0 313 28.8


User provided reference genes

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