Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 0.0e+00 1342.0 706 100.0
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 2.5e-274 948.7 747 73.5
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 1.2e-233 813.5 730 66.3
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 1.2e-167 594.3 733 53.1
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 1.9e-165 587.0 736 52.2
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 8.8e-163 578.2 711 54.1
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 9.1e-144 515.0 746 49.6
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 2.2e-142 510.4 733 48.7
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 1.6e-140 504.2 731 48.7
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 6.1e-132 475.7 735 47.8
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 8.0e-132 475.3 735 47.8
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 1.8e-131 474.2 745 47.4
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 2.3e-131 473.8 733 47.5
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 4.0e-131 473.0 743 47.1
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.0e-126 458.4 743 45.8
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 3.0e-126 456.8 687 47.2
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 9.5e-125 451.8 741 46.6
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 5.2e-123 446.0 774 43.9
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 8.9e-123 445.3 668 47.0
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 6.4e-121 439.1 732 44.1
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 4.6e-119 433.0 692 45.2
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 1.9e-117 427.6 783 41.8
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 3.3e-117 426.8 743 43.5
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 5.2e-115 419.5 535 49.7
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 2.6e-114 417.2 735 45.2
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 2.7e-111 407.1 737 41.5
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 1.7e-110 404.4 765 41.4
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 5.1e-110 402.9 729 43.3
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.9e-109 401.0 739 42.5
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 5.2e-107 392.9 581 47.2
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 2.7e-103 380.6 721 39.9
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 4.6e-103 379.8 738 40.1
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 3.0e-102 377.1 568 46.3
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 5.1e-102 376.3 673 45.0
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 1.5e-101 374.8 752 39.9
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 3.3e-101 373.6 772 39.8
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 3.3e-101 373.6 755 38.5
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 1.2e-100 371.7 747 42.0
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 1.6e-100 371.3 740 40.8
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 3.6e-100 370.2 700 41.3
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 5.8e-98 362.8 752 39.9
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 7.6e-98 362.5 727 39.5
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 9.9e-98 362.1 564 46.3
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 5.4e-96 356.3 729 40.1
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 5.4e-96 356.3 829 37.5
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 3.6e-92 343.6 722 39.8
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 6.2e-92 342.8 723 38.7
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 5.3e-91 339.7 724 38.0
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.2e-90 338.6 777 38.9
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 1.5e-90 338.2 553 44.3
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 2.0e-90 337.8 725 37.2
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 6.4e-89 332.8 736 37.1
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 1.9e-88 331.3 768 36.7
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 2.4e-88 330.9 726 36.9
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 3.5e-87 327.0 714 36.1
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 4.6e-87 326.6 740 38.2
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 7.9e-87 325.9 714 37.3
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 9.6e-85 318.9 727 39.8
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 1.3e-84 318.5 746 36.1
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 6.4e-81 306.2 754 36.2
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 1.9e-80 304.7 736 35.3
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 2.4e-80 304.3 827 34.2
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 5.5e-80 303.1 827 35.1
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 5.5e-80 303.1 740 36.1
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 5.5e-80 303.1 694 38.0
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 1.2e-79 302.0 746 35.8
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 1.1e-77 295.4 719 36.3
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 1.1e-77 295.4 634 38.8
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 1.5e-77 295.0 707 38.0
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 1.5e-77 295.0 632 40.2
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 9.0e-75 285.8 569 40.9
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 1.2e-74 285.4 509 40.7
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 7.6e-74 282.7 608 39.3
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 2.2e-73 281.2 696 34.1
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 2.9e-73 280.8 732 36.1
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 6.5e-73 279.6 767 35.5
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 8.4e-73 279.3 828 33.9
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 1.9e-72 278.1 733 35.1
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 4.2e-72 276.9 661 38.1
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 4.2e-72 276.9 755 35.8
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 1.2e-71 275.4 836 34.9
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 1.2e-71 275.4 603 37.8
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 1.6e-71 275.0 710 36.8
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 1.6e-71 275.0 642 39.3
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 3.5e-71 273.9 768 35.2
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 7.9e-71 272.7 845 32.3
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 3.9e-70 270.4 710 35.5
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 6.7e-70 269.6 584 39.4
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 8.7e-70 269.2 710 35.4
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 4.3e-69 266.9 638 37.9
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 7.4e-69 266.2 710 35.2
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 3.7e-68 263.8 723 35.0
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 1.4e-67 261.9 567 40.9
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 5.3e-67 260.0 703 34.4
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 6.9e-67 259.6 733 35.5
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 2.1e-63 248.1 711 32.5
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 4.6e-63 246.9 730 33.3
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 7.9e-63 246.1 730 34.0
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 7.9e-63 246.1 227 60.4
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 1.5e-61 241.9 705 33.5
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 7.4e-61 239.6 721 33.6
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 1.6e-60 238.4 702 33.5
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 1.8e-59 235.0 783 33.3
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 1.7e-57 228.4 339 46.6
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 5.5e-56 223.4 197 65.5
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 9.4e-56 222.6 777 31.4
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 1.7e-52 211.8 375 39.7
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 1.8e-51 208.4 479 37.4
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 1.9e-48 198.4 261 46.7
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 1.0e-46 192.6 399 41.6
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 9.4e-40 169.5 522 32.0
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 3.0e-38 164.5 711 28.6
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 1.8e-35 155.2 488 31.4
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 2.0e-34 151.8 182 52.7
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 5.9e-34 150.2 679 29.3
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 1.3e-33 149.1 467 34.9
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 1.2e-31 142.5 486 32.3
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 6.8e-30 136.7 576 28.8
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 3.4e-29 134.4 91 72.5
CSS0009679 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.4e-27 129.0 382 34.8
CSS0049071 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.6e-26 125.6 419 33.9
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 2.9e-25 121.3 159 52.2
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 7.7e-18 96.7 136 47.1
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 2.3e-17 95.1 76 60.5
CSS0001570 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 6.6e-17 93.6 161 42.9
TAR381G0477 Trochodendron aralioides HOM05D004882 ORTHO05D005551 6.1e-15 87.0 92 54.3
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 5.7e-13 80.5 71 53.5
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 8.3e-12 76.6 57 63.2
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 5.9e-10 70.5 66 56.1
vmacro01916 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 4.3e-08 64.3 139 36.0
SHI04903 Sapria himalayana HOM05D004882 ORTHO05D005551 7.3e-08 63.5 41 70.7
Zm00001eb090710 Zea mays HOM05D004882 ORTHO05D005551 6.2e-07 60.5 308 28.9
VMungo0647G2224 Vigna mungo HOM05D004882 ORTHO05D005551 2.3e-06 58.5 56 58.9
Zm00001eb205120 Zea mays HOM05D004882 ORTHO05D005551 2.3e-06 58.5 132 31.8
Prupe.8G157000 Prunus persica HOM05D004882 ORTHO05D005551 3.1e-06 58.2 178 35.4
SEGI_28562 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 3.1e-06 58.2 65 44.6
Nn5g30227 Nelumbo nucifera HOM05D004882 ORTHO05D005551 5.2e-06 57.4 49 63.3
HanXRQChr10g0297671 Helianthus annuus HOM05D004882 ORTHO05D005551 6.8e-06 57.0 166 30.7


User provided reference genes

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