Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 2404.0 1306 100.0
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 2111.3 1311 88.9
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1994.2 1309 83.9
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1909.8 1354 79.2
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1781.5 1310 73.1
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1665.2 1236 71.4
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1661.7 1349 66.3
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1661.4 1239 71.6
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1659.0 1245 70.9
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1655.6 1308 68.3
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1651.7 1309 69.1
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1649.0 1307 69.5
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1635.9 1306 67.3
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1631.3 1239 70.6
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1624.0 1306 67.4
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1610.9 1305 67.9
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1609.3 1308 67.2
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1602.4 1314 65.6
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1597.8 1383 65.2
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1597.8 1313 65.5
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1594.3 1316 66.0
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1579.7 1232 68.3
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 1578.9 1235 68.3
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1578.9 1213 68.3
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1576.2 1239 67.4
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1570.4 1186 70.2
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1567.7 1311 65.6
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1563.1 1312 64.3
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1559.3 1373 64.1
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1557.3 1308 66.7
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1555.8 1308 65.0
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1553.1 1345 64.8
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1548.5 1310 63.7
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1547.7 1220 67.8
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1545.8 1242 66.0
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1543.9 1226 68.3
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1540.0 1381 63.0
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1540.0 1254 66.5
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1538.1 1322 63.3
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1537.3 1231 67.0
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1536.5 1307 64.8
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1535.0 1256 67.0
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1533.1 1315 64.9
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1530.8 1227 67.9
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1528.8 1302 65.4
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1523.1 1313 62.8
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1515.0 1234 65.4
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1511.9 1275 64.4
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1505.7 1264 65.0
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1503.0 1248 63.6
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1502.3 1267 63.5
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1496.5 1313 62.9
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1494.6 1268 63.2
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1493.0 1276 62.7
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1489.2 1256 64.8
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1486.5 1232 63.9
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1469.9 1269 63.4
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1468.4 1328 62.1
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1467.6 1286 62.9
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1462.6 1309 61.3
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 1455.7 1293 62.3
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1452.2 1309 60.7
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1446.0 1257 64.2
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1443.7 1269 64.0
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1443.7 1323 61.7
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1433.7 1332 60.1
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 1429.5 1338 59.4
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1429.5 1228 63.9
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1425.6 1245 64.0
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1417.5 1204 63.3
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1416.7 1322 60.4
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1410.6 1305 61.2
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 1407.1 1210 63.7
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 1406.7 1267 61.6
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1404.0 1317 60.4
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1403.3 1317 60.4
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 1402.5 1267 62.0
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 1397.9 1337 59.6
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1391.3 1335 59.6
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 1382.9 1340 59.0
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1378.2 1205 62.7
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1377.5 1205 63.1
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1377.5 1205 63.1
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1374.8 1202 62.7
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 1371.7 1342 58.8
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 1370.1 1240 60.9
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1366.3 1307 59.0
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1358.2 1294 59.0
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1344.3 1297 57.3
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 1341.6 1259 60.4
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1308.5 1089 64.2
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 0.0e+00 1307.7 1311 56.4
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1294.3 1277 56.9
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1266.5 1230 58.5
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1262.3 1179 59.2
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1236.5 1270 55.8
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1235.3 1261 56.3
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 0.0e+00 1207.6 1277 53.6
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1187.9 1259 55.0
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1179.1 954 68.2
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 0.0e+00 1160.2 1145 58.3
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 0.0e+00 1158.3 1251 53.0
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 0.0e+00 1135.2 1363 49.3
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 0.0e+00 1129.0 1313 49.8
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 0.0e+00 1084.3 1274 50.3
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 2.7e-306 1055.8 762 72.3
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 1.4e-286 990.3 1246 47.4
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 5.0e-281 971.8 1232 47.0
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 1.1e-270 937.6 716 70.0
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 3.4e-261 906.0 1313 44.8
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 2.5e-227 793.5 1111 44.0
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 1.2e-189 668.3 543 70.3
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 4.1e-174 616.7 434 71.2
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 3.9e-164 583.6 545 61.5
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 1.2e-162 578.6 457 68.1
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 2.0e-160 571.2 673 54.2
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 4.4e-160 570.1 826 47.7
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 1.1e-153 548.9 1225 34.0
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.5e-152 545.0 1255 33.6
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 2.6e-152 544.3 1208 34.6
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.9e-150 538.1 1270 33.1
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 6.4e-143 513.1 615 47.8
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 3.1e-129 467.6 1139 32.5
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 9.9e-128 462.6 1287 30.8
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 3.1e-113 414.5 1052 33.4
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 3.8e-103 380.9 1211 29.1
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 9.4e-102 376.3 1051 32.2
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 1.0e-87 329.7 332 56.0
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 2.1e-77 295.4 247 62.8
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 6.1e-77 293.9 511 38.7
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 1.8e-76 292.4 510 38.6
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 2.0e-43 182.6 1180 24.5
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 3.7e-42 178.3 217 48.4
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 1.3e-34 153.3 142 59.9
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 1.7e-31 142.9 1246 23.8
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.1e-29 136.0 358 30.4
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 5.8e-27 127.9 147 47.6
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 2.2e-26 125.9 100 61.0
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 6.4e-26 124.4 134 53.0
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 8.7e-23 114.0 193 37.3
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.2e-19 103.6 121 50.4
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 2.9e-18 99.0 112 54.5
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 4.9e-18 98.2 67 70.1
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 6.4e-18 97.8 82 62.2
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 1.9e-17 96.3 61 77.0
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 2.1e-16 92.8 191 37.2
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 1.0e-15 90.5 73 57.5
BraA02t09256Z Brassica rapa HOM05D004672 ORTHO05D005732 6.7e-15 87.8 72 58.3
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 1.5e-14 86.7 71 57.7
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 1.1e-12 80.5 65 60.0
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 1.1e-12 80.5 65 60.0
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 4.5e-11 75.1 84 42.9
SGA_v2.0_scaffold32G12947 Striga asiatica HOM05D004672 ORTHO05D005732 5.5e-09 68.2 84 46.4
arahy.Tifrunner.gnm1.ann1.F8N9WK Arachis hypogaea HOM05D000158 ORTHO05D000197 1.0e-07 63.9 76 46.1
Ah.01g011940 Amaranthus hybridus HOM05D004672 ORTHO05D005732 6.7e-07 61.2 55 50.9
SalBow1G8382 Salvia bowleyana HOM05D004672 ORTHO05D005732 2.5e-06 59.3 41 75.6
Glyma.07G215100 Glycine max HOM05D005611 ORTHO05D006852 3.3e-06 58.9 68 48.5
unitig_21.g20701 Utricularia gibba HOM05D004672 ORTHO05D005732 3.3e-06 58.9 49 61.2
Zm00001eb132650 Zea mays HOM05D004672 ORTHO05D005732 4.3e-06 58.5 43 62.8


User provided reference genes

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