Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 6.5e-42 173.7 92 100.0
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 5.7e-30 134.0 89 77.5
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 2.2e-29 132.1 88 79.5
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 6.3e-29 130.6 89 76.4
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 8.2e-29 130.2 84 77.4
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 4.1e-28 127.9 89 74.2
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 5.3e-28 127.5 84 75.0
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 7.0e-28 127.1 87 71.3
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 9.1e-28 126.7 84 75.0
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 2.0e-27 125.6 84 72.6
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 3.5e-27 124.8 84 73.8
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 3.5e-27 124.8 88 71.6
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 4.5e-27 124.4 88 69.3
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 5.9e-27 124.0 88 71.6
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 7.7e-27 123.6 89 68.5
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 1.0e-26 123.2 87 71.3
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 1.3e-26 122.9 89 67.4
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 1.3e-26 122.9 84 72.6
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 1.7e-26 122.5 87 71.3
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.7e-26 122.5 87 70.1
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.7e-26 122.5 84 72.6
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 1.7e-26 122.5 84 72.6
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 2.9e-26 121.7 85 70.6
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 3.8e-26 121.3 88 67.0
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 6.5e-26 120.6 85 70.6
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 6.5e-26 120.6 84 71.4
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 6.5e-26 120.6 84 71.4
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 6.5e-26 120.6 84 71.4
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 8.5e-26 120.2 88 68.2
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 1.1e-25 119.8 87 71.3
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 1.1e-25 119.8 84 72.6
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 1.1e-25 119.8 88 65.9
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.1e-25 119.8 88 67.0
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 1.1e-25 119.8 87 67.8
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 1.5e-25 119.4 87 67.8
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 1.5e-25 119.4 94 67.0
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 1.5e-25 119.4 83 72.3
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 1.9e-25 119.0 87 70.1
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 2.5e-25 118.6 94 63.8
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 2.5e-25 118.6 84 71.4
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 3.2e-25 118.2 84 72.6
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 4.2e-25 117.9 86 68.6
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 4.2e-25 117.9 84 69.0
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 5.5e-25 117.5 88 68.2
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 5.5e-25 117.5 92 68.5
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 7.2e-25 117.1 80 72.5
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 7.2e-25 117.1 86 66.3
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 7.2e-25 117.1 88 64.8
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 7.2e-25 117.1 81 72.8
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 9.4e-25 116.7 89 65.2
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 1.2e-24 116.3 84 66.7
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 1.2e-24 116.3 85 67.1
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 1.6e-24 115.9 84 69.0
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 1.6e-24 115.9 87 67.8
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 2.1e-24 115.5 89 66.3
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 2.1e-24 115.5 87 64.4
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 2.7e-24 115.2 83 68.7
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 2.7e-24 115.2 80 68.8
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 2.7e-24 115.2 80 68.8
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 2.7e-24 115.2 88 68.2
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 3.6e-24 114.8 84 67.9
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 3.6e-24 114.8 84 66.7
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 4.7e-24 114.4 84 70.2
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 6.1e-24 114.0 83 68.7
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 6.1e-24 114.0 81 71.6
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 6.1e-24 114.0 84 65.5
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.0e-23 113.2 80 68.8
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 1.0e-23 113.2 85 68.2
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 1.0e-23 113.2 90 66.7
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 2.3e-23 112.1 85 67.1
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 2.3e-23 112.1 90 61.1
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 3.0e-23 111.7 83 66.3
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 4.0e-23 111.3 81 67.9
Sabra09G0061800 Salix brachista HOM05D004709 ORTHO05D005669 5.2e-23 110.9 60 95.0
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 5.2e-23 110.9 87 64.4
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 1.5e-22 109.4 87 67.8
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 3.4e-22 108.2 89 62.9
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 3.4e-22 108.2 87 64.4
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 3.4e-22 108.2 87 64.4
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 4.4e-22 107.8 80 72.5
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 4.4e-22 107.8 87 65.5
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 5.7e-22 107.5 89 60.7
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 7.5e-22 107.1 80 67.5
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 2.2e-21 105.5 81 61.7
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 2.8e-21 105.1 90 61.1
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 4.8e-21 104.4 81 65.4
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 4.8e-21 104.4 83 65.1
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 8.3e-21 103.6 88 62.5
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 1.4e-20 102.8 84 63.1
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 2.4e-20 102.1 81 60.5
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 4.1e-20 101.3 68 69.1
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 5.4e-20 100.9 81 58.0
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.2e-19 99.8 66 75.8
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 1.6e-19 99.4 87 57.5
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 4.5e-19 97.8 67 70.1
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 5.9e-19 97.4 89 59.6
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 2.9e-18 95.1 80 62.5
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 1.1e-17 93.2 84 53.6
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 1.1e-17 93.2 61 73.8
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 1.5e-17 92.8 84 54.8
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 1.9e-17 92.4 82 54.9
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 2.5e-17 92.0 81 55.6
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 3.2e-17 91.7 59 74.6
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 3.2e-17 91.7 82 52.4
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 3.2e-17 91.7 81 55.6
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 7.2e-17 90.5 82 51.2
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 7.2e-17 90.5 82 51.2
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 9.5e-17 90.1 74 52.7
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 1.2e-16 89.7 84 53.6
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 1.2e-16 89.7 82 51.2
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 1.2e-16 89.7 82 52.4
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 1.6e-16 89.4 82 51.2
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 2.1e-16 89.0 82 51.2
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 2.1e-16 89.0 82 51.2
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 2.8e-16 88.6 82 51.2
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 3.6e-16 88.2 90 50.0
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 4.7e-16 87.8 87 48.3
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 4.7e-16 87.8 86 50.0
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 4.7e-16 87.8 65 64.6
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 6.1e-16 87.4 85 51.8
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 8.0e-16 87.0 82 50.0
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 8.0e-16 87.0 82 50.0
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 8.0e-16 87.0 82 51.2
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 2.3e-15 85.5 82 50.0
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 2.3e-15 85.5 82 50.0
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 2.3e-15 85.5 82 48.8
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 2.3e-15 85.5 82 50.0
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 2.3e-15 85.5 82 48.8
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 2.3e-15 85.5 82 50.0
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 4.0e-15 84.7 82 50.0
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 4.0e-15 84.7 82 50.0
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 4.0e-15 84.7 82 48.8
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 5.2e-15 84.3 72 56.9
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 7.5e-14 80.5 74 58.1
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 9.8e-14 80.1 84 50.0
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 1.3e-13 79.7 58 69.0
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.4e-12 76.3 64 59.4
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 3.1e-12 75.1 76 50.0
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 3.1e-12 75.1 76 50.0
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 4.1e-12 74.7 76 50.0
unitig_37.g12784 Utricularia gibba HOM05D004709 ORTHO05D005669 7.0e-12 73.9 62 66.1
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 9.2e-12 73.6 76 48.7
CARHR099960 Cardamine hirsuta HOM05D004709 ORTHO05D005669 8.6e-10 67.0 65 50.8
Cfa024147 Carpinus fangiana HOM05D004709 ORTHO05D005669 1.9e-09 65.9 94 45.7
SMO174G0212 Selaginella moellendorffii HOM05D004709 ORTHO05D005669 4.3e-09 64.7 89 49.4
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 9.5e-09 63.5 78 39.7
PRCOL_00002203 Prasinoderma coloniale HOM05D004709 ORTHO05D005669 1.2e-08 63.2 85 44.7
MCO16G339 Micromonas commoda HOM05D004709 ORTHO05D005669 1.0e-07 60.1 82 40.2
BcaC03g15765 Brassica carinata HOM05D004709 ORTHO05D005669 1.2e-06 56.6 82 40.2
CDE02G0474 Ceratophyllum demersum HOM05D004709 ORTHO05D005669 1.2e-06 56.6 34 79.4


User provided reference genes

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