Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G069300 Populus trichocarpa HOM05D006179 ORTHO05D008370 3.1e-170 601.7 297 100.0
Sabra09G0052200 Salix brachista HOM05D006179 ORTHO05D008370 2.2e-152 542.3 341 82.4
GSVIVG01037292001 Vitis vinifera HOM05D006179 ORTHO05D008370 3.5e-129 465.3 300 78.7
Cfa009884 Carpinus fangiana HOM05D006179 ORTHO05D008370 1.1e-125 453.8 303 75.9
QL01p016926 Quercus lobata HOM05D006179 ORTHO05D008370 2.6e-124 449.1 301 75.1
Atru.chr3.2957 Acer truncatum HOM05D006179 ORTHO05D008370 2.2e-123 446.0 302 73.2
CiPaw.14G111900 Carya illinoinensis HOM05D006179 ORTHO05D008370 1.5e-119 433.3 302 72.8
Prupe.4G263800 Prunus persica HOM05D006179 ORTHO05D008370 3.3e-119 432.2 300 73.0
TAR623G0610 Trochodendron aralioides HOM05D006179 ORTHO05D008370 5.8e-116 421.4 304 72.0
CSS0020940 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 1.3e-115 420.2 310 70.6
PGR119G2402 Punica granatum HOM05D006179 ORTHO05D008370 1.3e-115 420.2 310 69.7
RcHm_v2.0_Chr5g0050451 Rosa chinensis HOM05D006179 ORTHO05D008370 5.4e-114 414.8 301 71.4
vmacro14276 Vaccinium macrocarpon HOM05D006179 ORTHO05D008370 1.2e-113 413.7 314 69.1
Thecc.09G246900 Theobroma cacao HOM05D006179 ORTHO05D008370 1.6e-113 413.3 355 60.6
Gohir.D07G125300 Gossypium hirsutum HOM05D006179 ORTHO05D008370 2.1e-113 412.9 298 68.5
COL.COLO4_24491 Corchorus olitorius HOM05D006179 ORTHO05D008370 4.6e-113 411.8 302 68.5
Haze_23248 Corylus avellana HOM05D006179 ORTHO05D008370 1.0e-112 410.6 397 57.7
Gohir.A07G121100 Gossypium hirsutum HOM05D006179 ORTHO05D008370 1.3e-112 410.2 298 68.1
Rhsim01G0195300 Rhododendron simsii HOM05D006179 ORTHO05D008370 1.7e-112 409.8 315 67.9
ClCG02G022800 Citrullus lanatus HOM05D006179 ORTHO05D008370 3.9e-112 408.7 310 69.0
CANSAT54G1770 Cannabis sativa HOM05D006179 ORTHO05D008370 1.2e-110 403.7 303 67.7
MD11G1184200 Malus domestica HOM05D006179 ORTHO05D008370 6.2e-110 401.4 304 71.4
Nn2g14782 Nelumbo nucifera HOM05D006179 ORTHO05D008370 2.4e-109 399.4 300 67.7
Lalb_Chr04g0249261 Lupinus albus HOM05D006179 ORTHO05D008370 4.0e-109 398.7 300 69.0
arahy.Tifrunner.gnm1.ann1.66DN5N Arachis hypogaea HOM05D006179 ORTHO05D008370 8.9e-109 397.5 248 77.4
Glyma.14G035700 Glycine max HOM05D006179 ORTHO05D008370 1.2e-108 397.1 296 72.0
TWI79G0794 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 2.6e-108 396.0 304 68.1
Atru.chr3.2952 Acer truncatum HOM05D006179 ORTHO05D008370 7.6e-108 394.4 275 72.0
TPR.G16411 Trifolium pratense HOM05D006179 ORTHO05D008370 1.3e-107 393.7 284 70.1
Hma1.2p1_0470F.1_g159226 Hydrangea macrophylla HOM05D006179 ORTHO05D008370 1.7e-107 393.3 290 69.3
Nitab4.5_0001290g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 2.9e-107 392.5 267 73.4
arahy.Tifrunner.gnm1.ann1.0RM1GA Arachis hypogaea HOM05D006179 ORTHO05D008370 3.8e-107 392.1 254 76.0
Glyma.02G279000 Glycine max HOM05D006179 ORTHO05D008370 3.8e-107 392.1 288 71.2
Sed0005347 Sechium edule HOM05D006179 ORTHO05D008370 8.4e-107 391.0 300 67.7
VMungo0647G1137 Vigna mungo HOM05D006179 ORTHO05D008370 8.4e-107 391.0 293 70.3
TWI31G1173 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 1.1e-106 390.6 304 68.1
LjContig00564g0004002 Lotus japonicus HOM05D006179 ORTHO05D008370 2.4e-106 389.4 300 69.7
SGA_v2.0_scaffold8G04541 Striga asiatica HOM05D006179 ORTHO05D008370 2.4e-106 389.4 306 68.3
Hund21973 Selenicereus undatus HOM05D006179 ORTHO05D008370 4.2e-106 388.7 223 81.6
FvH4_3g27810 Fragaria vesca HOM05D006179 ORTHO05D008370 9.2e-106 387.5 292 70.5
Lj2C622G16 Lonicera japonica HOM05D006179 ORTHO05D008370 1.6e-105 386.7 343 60.6
AUR62000204 Chenopodium quinoa HOM05D006179 ORTHO05D008370 2.1e-105 386.3 231 80.1
Oeu061700.1 Olea europaea HOM05D006179 ORTHO05D008370 2.7e-105 386.0 307 68.4
PGSC0003DMG401004716 Solanum tuberosum HOM05D006179 ORTHO05D008370 2.7e-105 386.0 234 78.2
EL10Ac4g10106 Beta vulgaris HOM05D006179 ORTHO05D008370 4.6e-105 385.2 302 65.9
Cpa.g.sc157.57 Carica papaya HOM05D006179 ORTHO05D008370 7.8e-105 384.4 305 67.5
Phvul.008G201800 Phaseolus vulgaris HOM05D006179 ORTHO05D008370 1.0e-104 384.0 293 68.9
Sopen12g034430 Solanum pennellii HOM05D006179 ORTHO05D008370 1.0e-104 384.0 309 65.0
Solyc12g099800.2 Solanum lycopersicum HOM05D006179 ORTHO05D008370 1.3e-104 383.6 309 64.7
Ah.04g159740 Amaranthus hybridus HOM05D006179 ORTHO05D008370 2.3e-104 382.9 219 81.3
FAN25G1664 Fragaria x ananassa HOM05D006179 ORTHO05D008370 2.3e-104 382.9 306 68.6
Migut.D00669 Erythranthe guttata HOM05D006179 ORTHO05D008370 1.9e-103 379.8 312 66.3
AUR62006552 Chenopodium quinoa HOM05D006179 ORTHO05D008370 4.3e-103 378.6 234 76.5
Gorai.001G135100 Gossypium raimondii HOM05D006179 ORTHO05D008370 4.3e-103 378.6 231 77.5
Ca_06199_v3 Cicer arietinum L. HOM05D006179 ORTHO05D008370 1.2e-102 377.1 219 80.4
SalBow6G4024 Salvia bowleyana HOM05D006179 ORTHO05D008370 1.2e-102 377.1 289 68.9
Cc00_g17410 Coffea canephora HOM05D006179 ORTHO05D008370 2.8e-102 375.9 238 76.5
Duzib170G0239 Durio zibethinus HOM05D006179 ORTHO05D008370 2.8e-102 375.9 301 65.1
PSO339G0647 Papaver somniferum HOM05D006179 ORTHO05D008370 3.6e-102 375.6 288 67.7
Sc16g0011000 Simmondsia chinensis HOM05D006179 ORTHO05D008370 3.6e-102 375.6 222 80.2
HanXRQChr13g0390131 Helianthus annuus HOM05D006179 ORTHO05D008370 8.1e-102 374.4 304 63.8
Psat2g020720 Pisum sativum HOM05D006179 ORTHO05D008370 8.1e-102 374.4 293 66.2
Medtr5g089330 Medicago truncatula HOM05D006179 ORTHO05D008370 1.4e-101 373.6 286 66.1
Aqoxy1G00395 Aquilegia oxysepala HOM05D006179 ORTHO05D008370 1.8e-101 373.2 297 65.3
CAN.G1305.17 Capsicum annuum HOM05D006179 ORTHO05D008370 3.1e-101 372.5 272 69.5
PSO384G2846 Papaver somniferum HOM05D006179 ORTHO05D008370 9.0e-101 370.9 298 65.8
CDE02G1620 Ceratophyllum demersum HOM05D006179 ORTHO05D008370 2.2e-99 366.3 303 64.0
unitig_62.g23875 Utricularia gibba HOM05D006179 ORTHO05D008370 6.4e-99 364.8 223 77.6
ATR0621G006 Amborella trichopoda HOM05D006179 ORTHO05D008370 1.4e-98 363.6 224 75.4
TPR.G16393 Trifolium pratense HOM05D006179 ORTHO05D008370 1.5e-95 353.6 281 63.3
Nn7g36750 Nelumbo nucifera HOM05D006179 ORTHO05D008370 2.5e-95 352.8 223 75.8
Peaxi162Scf00272g00828 Petunia axillaris HOM05D006179 ORTHO05D008370 3.3e-95 352.4 264 67.0
Os07g0687500 Oryza sativa ssp. japonica HOM05D006179 ORTHO05D008370 9.6e-95 350.9 295 61.0
Zm00001eb331180 Zea mays HOM05D006179 ORTHO05D008370 9.6e-95 350.9 270 64.1
FAN21G1036 Fragaria x ananassa HOM05D006179 ORTHO05D008370 2.1e-94 349.7 300 65.0
Lsat_1_v5_gn_5_65341 Lactuca sativa HOM05D006179 ORTHO05D008370 5.3e-93 345.1 286 62.6
FAN11G2659 Fragaria x ananassa HOM05D000059 ORTHO05D008370 9.0e-93 344.4 265 69.8
THA.LOC104811194 Tarenaya hassleriana HOM05D006179 ORTHO05D008370 9.9e-92 340.9 303 60.7
CARHR193590 Cardamine hirsuta HOM05D006179 ORTHO05D008370 3.8e-91 339.0 300 60.3
Thhalv10014227m.g Eutrema salsugineum HOM05D006179 ORTHO05D008370 5.4e-90 335.1 303 59.1
BcaB01g04864 Brassica carinata HOM05D006179 ORTHO05D008370 1.2e-89 334.0 295 58.3
MELO3C014557.2 Cucumis melo HOM05D006179 ORTHO05D008370 2.7e-89 332.8 279 63.4
Sp6g25040 Schrenkiella parvula HOM05D006179 ORTHO05D008370 2.3e-88 329.7 303 59.1
C03p11040 Brassica napus HOM05D006179 ORTHO05D008370 3.0e-88 329.3 295 58.6
Aa31LG1G8830 Aethionema arabicum HOM05D006179 ORTHO05D008370 3.9e-88 328.9 305 57.4
DCAR_024400 Daucus carota HOM05D006179 ORTHO05D008370 3.9e-88 328.9 242 67.4
A03p09460 Brassica napus HOM05D006179 ORTHO05D008370 5.1e-88 328.6 295 58.0
BraA03t10264Z Brassica rapa HOM05D006179 ORTHO05D008370 5.1e-88 328.6 295 58.0
BolC3t13573H Brassica oleracea HOM05D006179 ORTHO05D008370 4.3e-87 325.5 295 58.3
AL6G30860 Arabidopsis lyrata HOM05D006179 ORTHO05D008370 5.6e-87 325.1 301 58.1
Nitab4.5_0002310g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 7.4e-87 324.7 317 60.9
CsaV3_6G038930 Cucumis sativus L. HOM05D006179 ORTHO05D008370 1.6e-86 323.6 255 66.7
AT5G19370 Arabidopsis thaliana HOM05D006179 ORTHO05D008370 4.0e-85 318.9 302 57.3
A02p05510 Brassica napus HOM05D006179 ORTHO05D008370 1.2e-84 317.4 293 58.0
BcaC03g13669 Brassica carinata HOM05D006179 ORTHO05D008370 9.9e-84 314.3 290 57.6
HPP92_028459 Vanilla planifolia HOM05D006179 ORTHO05D008370 4.2e-82 308.9 182 76.9
BraA02t05502Z Brassica rapa HOM05D006179 ORTHO05D008370 5.5e-82 308.5 317 53.6
Carub.0006s1771 Capsella rubella HOM05D006179 ORTHO05D008370 1.0e-80 304.3 303 55.8
Mapoly0003s0043 Marchantia polymorpha HOM05D006179 ORTHO05D008370 1.3e-80 303.9 249 58.6
Pp3c3_13280 Physcomitrium patens HOM05D006179 ORTHO05D008370 2.5e-79 299.7 267 55.4
SMO145G0007 Selaginella moellendorffii HOM05D006179 ORTHO05D008370 4.3e-79 298.9 219 64.4
BNapus_Darmor_BZH_scaffold_38p02550 Brassica napus HOM05D006179 ORTHO05D008370 2.8e-78 296.2 281 56.2
Dinv36157 Davidia involucrata HOM05D006179 ORTHO05D008370 9.0e-77 291.2 224 71.0
Manes.02G138400 Manihot esculenta HOM05D006179 ORTHO05D008370 5.5e-74 282.0 221 68.3
BcaB01g05143 Brassica carinata HOM05D006179 ORTHO05D008370 1.6e-73 280.4 179 71.5
AagrBONN_evm.TU.Sc2ySwM_117.3174 Anthoceros agrestis HOM05D006179 ORTHO05D008370 2.7e-73 279.6 224 58.9
Eucgr.J00687 Eucalyptus grandis HOM05D006179 ORTHO05D008370 3.5e-73 279.3 151 84.1
Ciclev10017644m.g Citrus clementina HOM05D006179 ORTHO05D008370 3.9e-72 275.8 151 83.4
CBR_g54969 Chara braunii HOM05D006179 ORTHO05D008370 6.7e-72 275.0 248 56.0
ECA233G4787 Erigeron canadensis HOM05D006179 ORTHO05D008370 4.8e-62 242.3 143 74.8
Peaxi162Scf00174g00223 Petunia axillaris HOM05D006179 ORTHO05D008370 1.4e-58 230.7 197 60.4
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 4.2e-58 229.2 143 79.0
AUR62040469 Chenopodium quinoa HOM05D006179 ORTHO05D008370 3.6e-57 226.1 145 74.5
SEGI_16296 Sequoiadendron giganteum HOM05D006179 ORTHO05D008370 2.2e-54 216.9 138 72.5
AUR62037598 Chenopodium quinoa HOM05D006179 ORTHO05D007344 6.5e-51 205.3 141 73.8
AUR62042212 Chenopodium quinoa HOM05D006179 ORTHO05D008370 9.4e-42 174.9 137 65.0
Cre07.g350400 Chlamydomonas reinhardtii HOM05D006179 ORTHO05D008370 4.5e-36 156.0 178 37.6
MCO13G336 Micromonas commoda HOM05D006179 ORTHO05D008370 2.7e-33 146.7 198 38.9
SalBow6G2129 Salvia bowleyana HOM05D006179 ORTHO05D353266 1.3e-30 137.9 228 43.9
CSS0040024 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 1.5e-23 114.4 69 81.2
CSS0040434 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 1.1e-18 98.2 137 42.3
MCO16G521 Micromonas commoda HOM05D005637 ORTHO05D006983 4.3e-10 69.7 102 42.2
QL02p019212 Quercus lobata HOM05D006179 ORTHO05D008370 4.3e-10 69.7 36 77.8
Haze_26617 Corylus avellana HOM05D006179 ORTHO05D164269 1.5e-07 61.2 97 39.2
MD11G1211400 Malus domestica HOM05D004980 ORTHO05D006505 1.5e-07 61.2 101 31.7
Cpa.g.sc12.256 Carica papaya HOM05D004980 ORTHO05D006505 4.4e-07 59.7 101 35.6
MD03G1195100 Malus domestica HOM05D004980 ORTHO05D006505 4.4e-07 59.7 101 31.7
Ca_06343_v3 Cicer arietinum L. HOM05D004980 ORTHO05D006505 7.5e-07 58.9 102 33.3
arahy.Tifrunner.gnm1.ann1.C5REQA Arachis hypogaea HOM05D004980 ORTHO05D006505 9.8e-07 58.5 100 32.0
CSS0002819 Camellia sinensis var. sinensis HOM05D004980 ORTHO05D006505 1.3e-06 58.2 96 32.3
VMungo0647G0060 Vigna mungo HOM05D004980 ORTHO05D006505 1.3e-06 58.2 100 32.0
LjContig00272g0012473 Lotus japonicus HOM05D004980 ORTHO05D006505 2.2e-06 57.4 97 32.0
Eucgr.G02481 Eucalyptus grandis HOM05D005637 ORTHO05D006983 3.7e-06 56.6 104 31.7
Manes.03G132700 Manihot esculenta HOM05D004980 ORTHO05D006505 3.7e-06 56.6 101 30.7
TAR624G0219 Trochodendron aralioides HOM05D004980 ORTHO05D006505 3.7e-06 56.6 101 30.7
Psat2g012600 Pisum sativum HOM05D004980 ORTHO05D006505 4.9e-06 56.2 95 30.5
Phvul.008G270700 Phaseolus vulgaris HOM05D004980 ORTHO05D006505 6.4e-06 55.8 102 32.4
Prupe.4G221100 Prunus persica HOM05D004980 ORTHO05D006505 6.4e-06 55.8 101 30.7
Sabra16G0233900 Salix brachista HOM05D004980 ORTHO05D006505 6.4e-06 55.8 101 30.7
arahy.Tifrunner.gnm1.ann1.45FXM1 Arachis hypogaea HOM05D004980 ORTHO05D006505 8.3e-06 55.5 101 30.7
FvH4_4g30970 Fragaria vesca HOM05D005637 ORTHO05D006983 8.3e-06 55.5 74 37.8
FAN07G0507 Fragaria x ananassa HOM05D005637 ORTHO05D006983 8.3e-06 55.5 74 37.8
FAN17G1506 Fragaria x ananassa HOM05D005637 ORTHO05D006983 8.3e-06 55.5 74 37.8
FAN22G0476 Fragaria x ananassa HOM05D005637 ORTHO05D006983 8.3e-06 55.5 74 37.8
Lalb_Chr17g0348661 Lupinus albus HOM05D004980 ORTHO05D006505 8.3e-06 55.5 102 30.4


User provided reference genes

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