Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G068300 Populus trichocarpa HOM05D002956 ORTHO05D009000 2.8e-160 568.5 284 100.0
Sabra09G0051400 Salix brachista HOM05D002956 ORTHO05D009000 4.5e-142 508.1 294 87.8
Manes.02G137000 Manihot esculenta HOM05D002956 ORTHO05D009000 2.0e-105 386.3 295 69.2
CSS0047298 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D009000 6.8e-90 334.7 290 62.8
Cfa009899 Carpinus fangiana HOM05D002956 ORTHO05D009000 4.9e-88 328.6 294 60.5
TAR633G2508 Trochodendron aralioides HOM05D002956 ORTHO05D009000 2.7e-86 322.8 290 58.6
RcHm_v2.0_Chr5g0050271 Rosa chinensis HOM05D002956 ORTHO05D009000 1.9e-84 316.6 246 64.6
Thecc.09G246200 Theobroma cacao HOM05D002956 ORTHO05D009000 2.5e-84 316.2 266 62.4
Atru.chr3.2859 Acer truncatum HOM05D002956 ORTHO05D009000 4.3e-84 315.5 283 58.7
Dinv04582 Davidia involucrata HOM05D000102 ORTHO05D000138 7.3e-84 314.7 282 60.3
Lj6g0021242 Lotus japonicus HOM05D002956 ORTHO05D009000 8.1e-83 311.2 277 59.6
QL01p016676 Quercus lobata HOM05D002956 ORTHO05D009000 8.1e-83 311.2 296 59.8
Aqoxy2G00440 Aquilegia oxysepala HOM05D002956 ORTHO05D009000 1.4e-82 310.5 267 59.9
Cpa.g.sc34.182 Carica papaya HOM05D002956 ORTHO05D009000 3.1e-82 309.3 291 56.4
Hma1.2p1_0460F.1_g157580 Hydrangea macrophylla HOM05D002956 ORTHO05D009000 1.5e-81 307.0 291 59.5
Actinidia06979 Actinidia chinensis HOM05D002956 ORTHO05D009000 2.6e-81 306.2 259 61.8
CANSAT54G2237 Cannabis sativa HOM05D002956 ORTHO05D009000 3.4e-81 305.8 258 59.7
TWI31G1447 Tripterygium wilfordii HOM05D002956 ORTHO05D009000 4.9e-80 302.0 277 58.1
Duzib150G0064 Durio zibethinus HOM05D002956 ORTHO05D009000 1.1e-79 300.8 267 58.1
MD00G1148000 Malus domestica HOM05D002956 ORTHO05D009000 1.1e-79 300.8 237 64.1
Ciclev10016188m.g Citrus clementina HOM05D002956 ORTHO05D009000 2.4e-79 299.7 211 68.7
unitig_8.g3652 Utricularia gibba HOM05D002956 ORTHO05D009000 2.4e-79 299.7 223 65.9
Haze_23260 Corylus avellana HOM05D002956 ORTHO05D009000 3.2e-79 299.3 361 51.0
Lalb_Chr15g0078501 Lupinus albus HOM05D002956 ORTHO05D009000 3.2e-79 299.3 295 56.3
Glyma.08G154600 Glycine max HOM05D002956 ORTHO05D009000 4.1e-79 298.9 300 54.0
Gohir.A05G073600 Gossypium hirsutum HOM05D002956 ORTHO05D009000 4.1e-79 298.9 246 61.0
Aa31LG5G8950 Aethionema arabicum HOM05D002956 ORTHO05D009000 5.4e-79 298.5 264 57.6
Gohir.D05G076500 Gossypium hirsutum HOM05D002956 ORTHO05D009000 3.5e-78 295.8 246 60.2
Gorai.009G077800 Gossypium raimondii HOM05D002956 ORTHO05D009000 3.5e-78 295.8 246 60.2
MBI19_g19212_MAGBIO Magnolia biondii HOM05D002956 ORTHO05D009000 6.0e-78 295.0 206 66.5
MD00G1134800 Malus domestica HOM05D002956 ORTHO05D009000 6.0e-78 295.0 269 59.9
PGR102G2739 Punica granatum HOM05D002956 ORTHO05D009000 6.0e-78 295.0 211 67.3
Glyma.15G273500 Glycine max HOM05D002956 ORTHO05D009000 2.3e-77 293.1 277 57.0
Migut.N02380 Erythranthe guttata HOM05D002956 ORTHO05D009000 3.9e-77 292.4 205 71.2
Phvul.005G020500 Phaseolus vulgaris HOM05D002956 ORTHO05D009000 3.9e-77 292.4 278 58.3
VMungo1080G0193 Vigna mungo HOM05D002956 ORTHO05D009000 3.9e-77 292.4 238 61.8
PSO384G3893 Papaver somniferum HOM05D002956 ORTHO05D009000 5.1e-77 292.0 276 58.3
PSO339G4249 Papaver somniferum HOM05D002956 ORTHO05D009000 6.6e-77 291.6 257 59.9
FAN27G0310 Fragaria x ananassa HOM05D002956 ORTHO05D009000 8.6e-77 291.2 255 60.0
MSTRG.17638 Avicennia marina HOM05D002956 ORTHO05D009000 1.1e-76 290.8 237 62.9
Eucgr.B03751 Eucalyptus grandis HOM05D002956 ORTHO05D009000 1.1e-76 290.8 212 68.9
GSVIVG01037339001 Vitis vinifera HOM05D002956 ORTHO05D009000 1.5e-76 290.4 183 73.2
FAN22G1360 Fragaria x ananassa HOM05D002956 ORTHO05D009000 2.5e-76 289.7 255 60.0
FvH4_2g35650 Fragaria vesca HOM05D002956 ORTHO05D009000 4.3e-76 288.9 255 59.6
Ca_26337_v3 Cicer arietinum L. HOM05D002956 ORTHO05D009000 5.6e-76 288.5 285 53.3
CDE08G0764 Ceratophyllum demersum HOM05D002956 ORTHO05D009000 7.3e-76 288.1 234 61.1
FAN20G2737 Fragaria x ananassa HOM05D002956 ORTHO05D009000 9.5e-76 287.7 266 57.9
Oeu027216.2 Olea europaea HOM05D002956 ORTHO05D009000 1.2e-75 287.3 284 56.3
THA.LOC104826457 Tarenaya hassleriana HOM05D002956 ORTHO05D009000 2.1e-75 286.6 275 56.4
ATR0307G004 Amborella trichopoda HOM05D002956 ORTHO05D009000 2.8e-75 286.2 221 64.7
Cc01_g06260 Coffea canephora HOM05D002956 ORTHO05D009000 2.8e-75 286.2 258 58.5
arahy.Tifrunner.gnm1.ann1.NKUQ81 Arachis hypogaea HOM05D002956 ORTHO05D009000 6.2e-75 285.0 215 67.0
Medtr3g437110 Medicago truncatula HOM05D002956 ORTHO05D009000 8.1e-75 284.6 276 54.3
Ah.06g194750 Amaranthus hybridus HOM05D002956 ORTHO05D009000 1.1e-74 284.3 302 53.6
arahy.Tifrunner.gnm1.ann1.UED96S Arachis hypogaea HOM05D002956 ORTHO05D009000 2.3e-74 283.1 211 66.8
Migut.D00676 Erythranthe guttata HOM05D002956 ORTHO05D009000 5.2e-74 282.0 242 58.3
FAN15G3287 Fragaria x ananassa HOM05D002956 ORTHO05D009000 5.2e-74 282.0 255 58.4
Solyc01g008700.4 Solanum lycopersicum HOM05D002956 ORTHO05D009000 5.2e-74 282.0 287 55.7
TPR.G11887 Trifolium pratense HOM05D002956 ORTHO05D009000 1.2e-73 280.8 214 64.0
CsaV3_6G038840 Cucumis sativus L. HOM05D002956 ORTHO05D009000 5.8e-73 278.5 206 67.5
Sc16g0010930 Simmondsia chinensis HOM05D002956 ORTHO05D009000 5.8e-73 278.5 203 65.5
Thhalv10002070m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 7.6e-73 278.1 248 61.3
Lsat_1_v5_gn_5_63121 Lactuca sativa HOM05D002956 ORTHO05D009000 1.3e-72 277.3 285 54.4
Sopen01g004220 Solanum pennellii HOM05D002956 ORTHO05D009000 3.7e-72 275.8 274 56.2
SGA_v2.0_scaffold29G12222 Striga asiatica HOM05D002956 ORTHO05D009000 3.7e-72 275.8 239 57.7
BcaC01g04913 Brassica carinata HOM05D002956 ORTHO05D008031 4.9e-72 275.4 248 58.9
C03p32170 Brassica napus HOM05D002956 ORTHO05D008031 1.4e-71 273.9 248 58.5
BcaB01g03033 Brassica carinata HOM05D002956 ORTHO05D008031 1.9e-71 273.5 257 56.8
AUR62006560 Chenopodium quinoa HOM05D002956 ORTHO05D009000 2.4e-71 273.1 278 54.7
MELO3C014549.2 Cucumis melo HOM05D002956 ORTHO05D009000 2.4e-71 273.1 278 56.1
BolC3t15559H Brassica oleracea HOM05D002956 ORTHO05D008031 5.4e-71 271.9 247 58.3
EL10Ac4g10093 Beta vulgaris HOM05D002956 ORTHO05D009000 9.2e-71 271.2 269 56.1
AUR62000215 Chenopodium quinoa HOM05D002956 ORTHO05D009000 1.6e-70 270.4 252 57.5
DCAR_006895 Daucus carota HOM05D002956 ORTHO05D009000 1.6e-70 270.4 243 59.3
PGSC0003DMG400004431 Solanum tuberosum HOM05D002956 ORTHO05D009000 2.1e-70 270.0 203 65.5
SalBow6G2483 Salvia bowleyana HOM05D002956 ORTHO05D009000 2.7e-70 269.6 223 60.5
A03p26830 Brassica napus HOM05D002956 ORTHO05D008031 4.6e-70 268.9 247 56.7
BraA03t11895Z Brassica rapa HOM05D002956 ORTHO05D008031 4.6e-70 268.9 247 56.7
HPP92_025063 Vanilla planifolia HOM05D002956 ORTHO05D009000 1.3e-69 267.3 212 63.2
Peaxi162Scf00032g02025 Petunia axillaris HOM05D002956 ORTHO05D009000 3.0e-69 266.2 307 49.5
ECA233G2896 Erigeron canadensis HOM05D000003 ORTHO05D009000 2.5e-68 263.1 194 66.0
Rhsim13G0206200 Rhododendron simsii HOM05D002956 ORTHO05D009000 3.3e-68 262.7 381 43.0
Carub.0004s0731 Capsella rubella HOM05D002956 ORTHO05D009000 4.3e-68 262.3 250 55.2
AL4G20050 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 1.2e-67 260.8 244 55.7
Thhalv10002099m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 4.7e-67 258.8 182 72.0
Nitab4.5_0000390g0150 Nicotiana tabacum HOM05D002956 ORTHO05D009000 3.4e-65 252.7 210 61.0
HanXRQChr12g0380431 Helianthus annuus HOM05D002956 ORTHO05D009000 1.9e-63 246.9 257 49.8
AT2G26840 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 2.5e-60 236.5 296 43.9
Sp4g08630 Schrenkiella parvula HOM05D002956 ORTHO05D009000 4.8e-59 232.3 221 54.8
Zm00001eb128680 Zea mays HOM05D002956 ORTHO05D009000 1.3e-53 214.2 207 54.1
ClCG02G022720 Citrullus lanatus HOM05D002956 ORTHO05D009000 1.7e-53 213.8 292 48.3
Os01g0268900 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D009000 1.1e-50 204.5 201 54.2
Nn7g36832 Nelumbo nucifera HOM05D002956 ORTHO05D009000 1.8e-50 203.8 215 53.5
Pp3c23_20070 Physcomitrium patens HOM05D002956 ORTHO05D009000 6.9e-50 201.8 213 49.3
COL.COLO4_07383 Corchorus olitorius HOM05D002956 ORTHO05D009000 9.0e-50 201.4 266 47.0
Duzib168G2273 Durio zibethinus HOM05D002956 ORTHO05D009000 7.6e-49 198.4 165 58.8
Mapoly0206s0003 Marchantia polymorpha HOM05D002956 ORTHO05D009000 4.9e-48 195.7 162 54.9
SMO367G0391 Selaginella moellendorffii HOM05D002956 ORTHO05D009000 4.9e-48 195.7 206 48.1
CBR_g32285 Chara braunii HOM05D002956 ORTHO05D009000 2.5e-44 183.3 161 50.9
CiPaw.14G111100 Carya illinoinensis HOM05D002956 ORTHO05D009000 2.4e-42 176.8 207 51.2
AL5G21910 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 1.6e-35 154.1 195 42.1
Prupe.4G260500 Prunus persica HOM05D002956 ORTHO05D009000 5.9e-33 145.6 141 59.6
Nitab4.5_0006687g0020 Nicotiana tabacum HOM05D002956 ORTHO05D009000 7.6e-33 145.2 96 69.8
CiPaw.13G148600 Carya illinoinensis HOM05D002956 ORTHO05D009000 1.1e-31 141.4 262 38.9
AagrBONN_evm.TU.Sc2ySwM_228.3484 Anthoceros agrestis HOM05D002956 ORTHO05D009000 2.1e-30 137.1 132 53.0
Nitab4.5_0006687g0010 Nicotiana tabacum HOM05D002956 ORTHO05D000001 1.0e-29 134.8 199 44.2
MCO16G644 Micromonas commoda HOM05D002956 ORTHO05D009000 1.4e-26 124.4 160 45.0
AT3G43910 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 3.4e-25 119.8 195 39.0
Psat5g240480 Pisum sativum HOM05D002956 ORTHO05D009000 1.3e-24 117.9 177 41.8
CARHR119020 Cardamine hirsuta HOM05D002956 ORTHO05D009000 2.7e-22 110.2 154 41.6
Sed0027603 Sechium edule HOM05D002956 ORTHO05D009000 3.6e-22 109.8 180 42.2
CARHR035860 Cardamine hirsuta HOM05D002956 ORTHO05D009000 3.2e-15 86.7 98 45.9
Cre04.g218000 Chlamydomonas reinhardtii HOM05D002956 ORTHO05D009000 1.6e-14 84.3 123 38.2
vmacro04046 Vaccinium macrocarpon HOM05D002956 ORTHO05D009000 6.7e-13 79.0 134 39.6
PRCOL_00003518 Prasinoderma coloniale HOM05D002956 ORTHO05D009000 1.7e-11 74.3 70 52.9
Oeu027210.1 Olea europaea HOM05D002956 ORTHO05D009000 1.1e-10 71.6 86 50.0
Psat5g184640 Pisum sativum HOM05D002956 ORTHO05D009000 2.6e-09 67.0 110 40.9
CARHR035850 Cardamine hirsuta HOM05D002956 ORTHO05D009000 5.9e-09 65.9 84 47.6


User provided reference genes

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