Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G064950 Populus trichocarpa HOM05D000309 ORTHO05D331423 1.1e-22 109.0 52 100.0
Potri.011G085000 Populus trichocarpa HOM05D000309 ORTHO05D000271 3.5e-08 60.8 32 84.4
Potri.004G132500 Populus trichocarpa HOM05D000309 ORTHO05D000271 5.9e-08 60.1 32 81.2
BcaC08g47437 Brassica carinata HOM05D000309 ORTHO05D000271 6.5e-07 56.6 35 71.4
Hund03222 Selenicereus undatus HOM05D000309 ORTHO05D000271 1.5e-06 55.5 34 64.7
Hund03223 Selenicereus undatus HOM05D000309 ORTHO05D000271 1.5e-06 55.5 34 64.7
TAR626G0002 Trochodendron aralioides HOM05D000309 ORTHO05D000271 1.5e-06 55.5 33 69.7
arahy.Tifrunner.gnm1.ann1.7IXS5T Arachis hypogaea HOM05D000309 ORTHO05D000271 1.9e-06 55.1 32 71.9
CiPaw.02G053500 Carya illinoinensis HOM05D000309 ORTHO05D000271 1.9e-06 55.1 34 64.7
CiPaw.15G162100 Carya illinoinensis HOM05D000309 ORTHO05D000271 1.9e-06 55.1 33 69.7
Cc01_g12310 Coffea canephora HOM05D000309 ORTHO05D000271 1.9e-06 55.1 32 71.9
TPR.G38820 Trifolium pratense HOM05D000309 ORTHO05D000271 1.9e-06 55.1 32 71.9
Cfa020753 Carpinus fangiana HOM05D000309 ORTHO05D000271 2.5e-06 54.7 33 66.7
CiPaw.02G053700 Carya illinoinensis HOM05D000309 ORTHO05D000271 2.5e-06 54.7 33 66.7
Haze_19145 Corylus avellana HOM05D000309 ORTHO05D005508 2.5e-06 54.7 33 66.7
QL11p007980 Quercus lobata HOM05D000309 ORTHO05D000271 2.5e-06 54.7 33 66.7
QL11p008260 Quercus lobata HOM05D000309 ORTHO05D000271 2.5e-06 54.7 33 66.7
QL11p008593 Quercus lobata HOM05D000309 ORTHO05D000271 2.5e-06 54.7 33 66.7
AL2G26090 Arabidopsis lyrata HOM05D000309 ORTHO05D000271 3.2e-06 54.3 32 71.9
AL2G39410 Arabidopsis lyrata HOM05D000309 ORTHO05D000271 3.2e-06 54.3 32 71.9
AT1G78960 Arabidopsis thaliana HOM05D000309 ORTHO05D000271 3.2e-06 54.3 32 71.9
BcaB02g07188 Brassica carinata HOM05D000309 ORTHO05D000271 3.2e-06 54.3 32 71.9
A07p27400 Brassica napus HOM05D000309 ORTHO05D000271 3.2e-06 54.3 32 71.9
A07p44110 Brassica napus HOM05D000309 ORTHO05D000271 3.2e-06 54.3 32 71.9
BolC6t38195H Brassica oleracea HOM05D000309 ORTHO05D000271 3.2e-06 54.3 32 71.9
BraA07t30381Z Brassica rapa HOM05D000309 ORTHO05D000271 3.2e-06 54.3 32 71.9
BraA07t31919Z Brassica rapa HOM05D000309 ORTHO05D000271 3.2e-06 54.3 32 71.9
CARHR060070 Cardamine hirsuta HOM05D000309 ORTHO05D000271 3.2e-06 54.3 32 71.9
Eucgr.D01163 Eucalyptus grandis HOM05D000309 ORTHO05D000271 3.2e-06 54.3 32 68.8
Sp5g34010 Schrenkiella parvula HOM05D000309 ORTHO05D000271 3.2e-06 54.3 32 71.9
THA.LOC104813625 Tarenaya hassleriana HOM05D000309 ORTHO05D000271 3.2e-06 54.3 32 71.9
GSVIVG01029475001 Vitis vinifera HOM05D000309 ORTHO05D000271 3.2e-06 54.3 32 68.8
Atru.chr2.245 Acer truncatum HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
Atru.chr2.249 Acer truncatum HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
AT1G78970 Arabidopsis thaliana HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 71.9
MSTRG.28263 Avicennia marina HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 71.9
EL10Ac2g03619 Beta vulgaris HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
CANSAT01G0834 Cannabis sativa HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
CANSAT01G0873 Cannabis sativa HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
CiPaw.15G162000 Carya illinoinensis HOM05D000309 ORTHO05D000271 4.2e-06 53.9 33 66.7
Ca_03785_v3 Cicer arietinum L. HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
ECA240G0559 Erigeron canadensis HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
Eucgr.F04038 Eucalyptus grandis HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
Eucgr.F04040 Eucalyptus grandis HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
Eucgr.F04050 Eucalyptus grandis HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
Eucgr.F04052 Eucalyptus grandis HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
Eucgr.L03326 Eucalyptus grandis HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
Thhalv10022563m.g Eutrema salsugineum HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
FvH4_7g10860 Fragaria vesca HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
FAN02G0580 Fragaria x ananassa HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
FAN02G2809 Fragaria x ananassa HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
FAN09G3974 Fragaria x ananassa HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
Glyma.07G001300 Glycine max HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
Hma1.2p1_0228F.1_g096490 Hydrangea macrophylla HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
Lj5A22G30 Lonicera japonica HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
Lj2g0012295 Lotus japonicus HOM05D000309 ORTHO05D000271 4.2e-06 53.9 33 66.7
Lalb_Chr01g0011591 Lupinus albus HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
MD09G1168300 Malus domestica HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
Manes.06G178100 Manihot esculenta HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
Medtr3g436160 Medicago truncatula HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
Medtr4g005190 Medicago truncatula HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
Medtr7g034535 Medicago truncatula HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
Nitab4.5_0003139g0020 Nicotiana tabacum HOM05D000309 ORTHO05D000271 4.2e-06 53.9 33 66.7
Psat7g264880 Pisum sativum HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
Psat7g264960 Pisum sativum HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
Prupe.3G026800 Prunus persica HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
PGR102G2970 Punica granatum HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
QL05p084194 Quercus lobata HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
RcHm_v2.0_Chr2g0148761 Rosa chinensis HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
RcHm_v2.0_Chr2g0148891 Rosa chinensis HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
RcHm_v2.0_Chr4g0385101 Rosa chinensis HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
Hund03224 Selenicereus undatus HOM05D000309 ORTHO05D000271 4.2e-06 53.9 34 61.8
Hund18560 Selenicereus undatus HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
Hund18562 Selenicereus undatus HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
TPR.G32876 Trifolium pratense HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
TWI75G0852 Tripterygium wilfordii HOM05D000309 ORTHO05D000271 4.2e-06 53.9 32 68.8
Aqoxy5G03839 Aquilegia oxysepala HOM05D000309 ORTHO05D000271 5.5e-06 53.5 33 69.7
Cc02_g33030 Coffea canephora HOM05D000309 ORTHO05D000271 5.5e-06 53.5 32 71.9
Haze_19085 Corylus avellana HOM05D000309 ORTHO05D000271 5.5e-06 53.5 33 66.7
Haze_19174 Corylus avellana HOM05D000309 ORTHO05D000271 5.5e-06 53.5 42 54.8
Dinv37483 Davidia involucrata HOM05D000309 ORTHO05D000271 5.5e-06 53.5 32 68.8
Dinv37485 Davidia involucrata HOM05D000309 ORTHO05D000271 5.5e-06 53.5 32 68.8
Thhalv10018166m.g Eutrema salsugineum HOM05D000309 ORTHO05D000271 5.5e-06 53.5 32 68.8
HanXRQChr13g0414221 Helianthus annuus HOM05D000309 ORTHO05D000271 5.5e-06 53.5 32 68.8
Lj3g0007120 Lotus japonicus HOM05D000309 ORTHO05D000271 5.5e-06 53.5 32 68.8
Lj3g0027230 Lotus japonicus HOM05D000309 ORTHO05D000271 5.5e-06 53.5 32 68.8
TWI09G0505 Tripterygium wilfordii HOM05D000309 ORTHO05D000271 5.5e-06 53.5 32 68.8
TWI73G0694 Tripterygium wilfordii HOM05D000309 ORTHO05D000271 5.5e-06 53.5 32 68.8
TAR383G0699 Trochodendron aralioides HOM05D000309 ORTHO05D000271 5.5e-06 53.5 32 68.8
unitig_43.g31049 Utricularia gibba HOM05D000309 ORTHO05D000271 5.5e-06 53.5 34 67.6
unitig_578.g16498 Utricularia gibba HOM05D000309 ORTHO05D000271 5.5e-06 53.5 34 67.6
AL2G39390 Arabidopsis lyrata HOM05D000309 ORTHO05D000271 7.2e-06 53.1 32 68.8
Cpa.g.sc531.1 Carica papaya HOM05D000309 ORTHO05D000271 7.2e-06 53.1 34 64.7
Ca_23321_v3 Cicer arietinum L. HOM05D000309 ORTHO05D000271 7.2e-06 53.1 32 68.8
DCAR_031237 Daucus carota HOM05D000309 ORTHO05D000271 7.2e-06 53.1 32 65.6
RcHm_v2.0_Chr2g0148701 Rosa chinensis HOM05D000309 ORTHO05D000271 7.2e-06 53.1 31 71.0
RcHm_v2.0_Chr2g0148811 Rosa chinensis HOM05D000309 ORTHO05D000271 7.2e-06 53.1 31 71.0
RcHm_v2.0_Chr2g0148941 Rosa chinensis HOM05D000309 ORTHO05D000271 7.2e-06 53.1 31 71.0
RcHm_v2.0_Chr4g0385071 Rosa chinensis HOM05D000309 ORTHO05D000271 7.2e-06 53.1 32 68.8
Sed0021043 Sechium edule HOM05D000309 ORTHO05D000271 7.2e-06 53.1 32 68.8
TAR383G0522 Trochodendron aralioides HOM05D000309 ORTHO05D000271 7.2e-06 53.1 31 71.0
GSVIVG01029508001 Vitis vinifera HOM05D000309 ORTHO05D000271 7.2e-06 53.1 32 68.8
AL2G39420 Arabidopsis lyrata HOM05D000309 ORTHO05D000271 9.5e-06 52.8 32 68.8
MSTRG.17340 Avicennia marina HOM05D000309 ORTHO05D000271 9.5e-06 52.8 32 68.8
CARHR072630 Cardamine hirsuta HOM05D000309 ORTHO05D000271 9.5e-06 52.8 32 68.8
AUR62001311 Chenopodium quinoa HOM05D000309 ORTHO05D000271 9.5e-06 52.8 32 65.6
AUR62025693 Chenopodium quinoa HOM05D000309 ORTHO05D000271 9.5e-06 52.8 32 65.6
AUR62027980 Chenopodium quinoa HOM05D000309 ORTHO05D000271 9.5e-06 52.8 33 63.6
AUR62031838 Chenopodium quinoa HOM05D000309 ORTHO05D000271 9.5e-06 52.8 32 65.6
Cc03_g13910 Coffea canephora HOM05D000309 ORTHO05D000271 9.5e-06 52.8 30 70.0
Dinv00784 Davidia involucrata HOM05D000309 ORTHO05D000271 9.5e-06 52.8 32 68.8
Dinv09456 Davidia involucrata HOM05D000309 ORTHO05D000271 9.5e-06 52.8 32 68.8
ECA246G5215 Erigeron canadensis HOM05D000309 ORTHO05D000271 9.5e-06 52.8 32 68.8
Migut.N01545 Erythranthe guttata HOM05D000309 ORTHO05D000271 9.5e-06 52.8 32 68.8
Eucgr.B00308 Eucalyptus grandis HOM05D000309 ORTHO05D000271 9.5e-06 52.8 32 65.6
Eucgr.B00318 Eucalyptus grandis HOM05D000309 ORTHO05D000271 9.5e-06 52.8 32 65.6
Eucgr.F04039 Eucalyptus grandis HOM05D000309 ORTHO05D000271 9.5e-06 52.8 32 65.6
Eucgr.F04049 Eucalyptus grandis HOM05D000309 ORTHO05D000271 9.5e-06 52.8 32 65.6
HanXRQChr05g0136641 Helianthus annuus HOM05D000309 ORTHO05D000001 9.5e-06 52.8 31 71.0
Lsat_1_v5_gn_8_71901 Lactuca sativa HOM05D000309 ORTHO05D000271 9.5e-06 52.8 31 71.0
Lj3g0018677 Lotus japonicus HOM05D000309 ORTHO05D000271 9.5e-06 52.8 32 65.6
Psat4g188800 Pisum sativum HOM05D000309 ORTHO05D000271 9.5e-06 52.8 32 68.8


User provided reference genes

Program Settings