Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.1e-201 706.4 361 100.0
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 1.2e-184 649.8 361 92.5
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 6.5e-178 627.5 365 89.6
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 7.1e-177 624.0 364 89.3
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 4.4e-150 535.0 365 75.6
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 9.7e-150 533.9 363 76.9
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.7e-146 523.1 365 74.8
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 2.2e-146 522.7 365 75.6
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 2.9e-146 522.3 365 74.5
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 6.5e-146 521.2 368 73.6
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 4.2e-145 518.5 365 75.1
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 4.0e-143 511.9 364 74.2
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 7.5e-142 507.7 361 73.1
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 2.2e-141 506.1 364 73.9
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 3.7e-141 505.4 365 73.2
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 1.4e-140 503.4 364 73.6
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 3.1e-140 502.3 367 72.2
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 3.5e-139 498.8 363 72.2
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 1.3e-138 496.9 364 72.5
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 1.3e-138 496.9 387 68.5
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 1.1e-137 493.8 363 72.7
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 1.9e-137 493.0 363 71.1
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 1.9e-137 493.0 363 71.1
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 3.2e-137 492.3 366 72.7
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 3.2e-137 492.3 358 72.1
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 1.2e-136 490.3 364 70.9
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 1.6e-136 490.0 368 70.7
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 1.6e-136 490.0 362 67.7
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 1.6e-136 490.0 363 69.1
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 2.7e-136 489.2 368 70.4
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 4.7e-136 488.4 361 71.5
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 6.1e-136 488.0 362 69.6
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 8.0e-136 487.6 358 72.1
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.0e-135 487.3 368 70.4
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 2.3e-135 486.1 364 70.6
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 6.8e-135 484.6 370 69.7
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 4.4e-134 481.9 365 72.1
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 5.7e-134 481.5 359 70.2
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 5.7e-134 481.5 367 70.6
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 9.8e-134 480.7 363 70.0
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 9.8e-134 480.7 366 67.5
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 3.7e-133 478.8 358 69.8
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 2.4e-132 476.1 363 68.9
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 2.4e-132 476.1 367 70.0
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 5.4e-132 474.9 367 70.3
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 7.0e-132 474.6 324 70.4
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 1.6e-131 473.4 353 70.5
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 5.9e-131 471.5 329 74.2
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 6.5e-130 468.0 425 61.6
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 2.5e-129 466.1 357 70.0
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 4.2e-129 465.3 364 68.7
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 7.2e-129 464.5 330 75.2
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 4.7e-128 461.8 350 67.4
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 6.1e-128 461.5 329 72.6
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 8.0e-128 461.1 359 68.0
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 1.0e-127 460.7 363 64.5
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 3.0e-127 459.1 329 72.0
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 4.0e-127 458.8 378 64.8
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 6.8e-127 458.0 324 75.0
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.2e-126 457.2 329 71.7
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 1.5e-126 456.8 363 64.2
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 3.4e-126 455.7 357 63.3
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 7.5e-126 454.5 356 63.5
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 7.5e-126 454.5 329 72.0
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 7.5e-126 454.5 364 65.4
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.3e-125 453.8 361 66.5
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 4.9e-125 451.8 353 68.3
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 6.3e-125 451.4 349 67.9
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 6.3e-125 451.4 359 67.7
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 1.1e-124 450.7 329 71.4
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 1.4e-124 450.3 359 66.3
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 2.4e-124 449.5 360 65.3
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 4.1e-124 448.7 360 65.8
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 2.0e-123 446.4 340 68.8
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 3.8e-122 442.2 363 64.2
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 6.6e-122 441.4 353 66.0
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 8.6e-122 441.0 359 64.6
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 1.9e-121 439.9 354 62.7
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 3.3e-121 439.1 361 64.3
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 3.3e-121 439.1 359 66.0
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 1.2e-120 437.2 375 63.5
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 1.6e-120 436.8 431 56.6
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 3.6e-120 435.6 352 66.5
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 1.8e-119 433.3 361 64.8
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 1.2e-118 430.6 340 67.1
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 9.8e-118 427.6 359 62.7
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 9.8e-118 427.6 356 62.4
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 1.7e-117 426.8 359 63.8
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 1.7e-117 426.8 370 61.9
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 2.9e-117 426.0 361 61.8
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 1.1e-116 424.1 364 58.8
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 5.0e-114 415.2 363 62.3
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 8.6e-114 414.5 329 67.2
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 2.1e-112 409.8 300 74.0
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 6.2e-112 408.3 331 66.2
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.4e-111 407.1 275 69.8
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 1.8e-111 406.8 326 66.3
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 2.3e-111 406.4 328 67.4
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 3.4e-110 402.5 365 60.5
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 2.2e-109 399.8 363 59.0
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 3.7e-109 399.1 323 68.1
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 4.9e-109 398.7 360 59.4
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 6.4e-109 398.3 359 57.9
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 1.1e-108 397.5 323 68.7
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 2.7e-107 392.9 359 53.2
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 2.7e-107 392.9 326 63.8
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 6.0e-107 391.7 325 64.6
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 1.7e-106 390.2 326 63.5
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 6.6e-106 388.3 357 57.1
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 8.6e-106 387.9 357 58.0
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 8.6e-106 387.9 357 57.4
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 4.3e-105 385.6 368 59.0
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 3.6e-104 382.5 348 58.3
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 6.2e-104 381.7 345 58.6
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 1.8e-103 380.2 345 58.3
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 6.0e-99 365.2 276 65.6
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 3.0e-98 362.8 327 63.0
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.5e-97 360.5 352 60.5
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 5.6e-97 358.6 299 65.2
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 5.6e-97 358.6 348 48.3
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 9.5e-97 357.8 294 66.7
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 2.1e-96 356.7 226 70.8
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 4.7e-96 355.5 413 48.4
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 4.4e-94 349.0 350 55.4
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 1.9e-92 343.6 272 66.2
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 3.2e-92 342.8 339 56.9
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 2.1e-91 340.1 329 52.6
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.7e-91 339.7 337 55.5
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 7.8e-91 338.2 284 58.8
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 7.8e-91 338.2 362 57.2
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 3.9e-90 335.9 240 65.8
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 1.9e-89 333.6 260 59.2
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.9e-89 333.6 359 54.3
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 5.6e-89 332.0 298 63.8
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 5.8e-86 322.0 325 48.9
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 2.2e-85 320.1 328 56.7
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 7.1e-84 315.1 359 49.9
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 3.3e-81 306.2 328 49.1
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 7.3e-81 305.1 359 47.6
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 6.2e-80 302.0 195 70.3
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 8.1e-80 301.6 331 53.5
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 2.4e-79 300.1 325 54.8
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 5.3e-79 298.9 330 53.6
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 2.0e-78 297.0 329 53.2
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 7.6e-78 295.0 328 53.4
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 2.9e-77 293.1 335 52.2
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 4.9e-77 292.4 332 53.3
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 4.2e-76 289.3 328 52.1
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 4.6e-75 285.8 328 51.8
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 1.0e-74 284.6 331 52.6
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 1.9e-73 280.4 326 49.7
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 1.6e-72 277.3 341 51.0
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 4.8e-72 275.8 327 50.5
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 6.9e-71 271.9 331 48.0
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.1e-67 260.4 197 61.4
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 8.7e-58 228.4 318 42.5
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 1.9e-57 227.3 220 46.4
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 3.7e-56 223.0 321 41.4
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 3.4e-54 216.5 109 90.8
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.4e-52 211.1 174 56.9
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 1.4e-52 211.1 373 39.7
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 2.3e-50 203.8 110 85.5
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 6.7e-50 202.2 319 42.0
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 4.6e-43 179.5 93 84.9
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 4.1e-15 86.7 102 38.2
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 1.0e-13 82.0 67 71.6
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 2.3e-13 80.9 38 86.8
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 2.9e-13 80.5 48 70.8
Cc02_g27780 Coffea canephora HOM05D003920 ORTHO05D017698 1.1e-12 78.6 43 88.4
BolC8t48153H Brassica oleracea HOM05D003920 ORTHO05D017698 3.0e-10 70.5 44 75.0
QL05p013448 Quercus lobata HOM05D001342 ORTHO05D017698 1.5e-09 68.2 45 73.3
BolC8t49779H Brassica oleracea HOM05D003920 ORTHO05D017698 9.8e-09 65.5 40 77.5
BraA08t34788Z Brassica rapa HOM05D003920 ORTHO05D017698 9.8e-09 65.5 40 77.5
MBI17_g06171_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D017698 1.7e-08 64.7 82 47.6
FAN10G2408 Fragaria x ananassa HOM05D003920 ORTHO05D017698 1.8e-07 61.2 48 66.7
QL93p2025_0050 Quercus lobata HOM05D003920 ORTHO05D337666 1.6e-06 58.2 30 86.7


User provided reference genes

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