Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.9e-161 572.8 359 100.0
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 3.0e-143 512.3 373 77.7
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 3.1e-124 449.1 364 67.9
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 3.1e-95 352.8 369 56.4
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 1.3e-90 337.4 368 55.7
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 1.5e-86 323.9 319 68.7
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 1.7e-85 320.5 366 53.0
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 2.3e-82 310.1 370 51.9
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 2.3e-82 310.1 372 50.5
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 3.0e-82 309.7 371 52.6
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 8.6e-82 308.1 372 50.5
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 1.9e-81 307.0 367 52.0
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 5.6e-81 305.4 381 50.1
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 2.4e-76 290.0 371 48.5
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 2.1e-75 287.0 369 48.8
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 4.6e-75 285.8 383 47.5
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 5.6e-73 278.9 407 45.5
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 2.8e-72 276.6 384 47.4
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 6.2e-72 275.4 404 48.5
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 8.1e-72 275.0 384 47.4
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 1.8e-71 273.9 387 48.3
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.4e-71 273.5 374 46.5
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 3.1e-71 273.1 415 48.2
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 6.8e-71 271.9 354 47.7
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 8.9e-71 271.6 408 51.7
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 2.6e-70 270.0 388 47.7
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 3.4e-70 269.6 374 44.4
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 8.4e-69 265.0 375 45.1
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.1e-68 264.6 407 51.1
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 2.4e-68 263.5 408 46.6
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 5.4e-68 262.3 366 44.8
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 9.2e-68 261.5 334 50.3
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 1.2e-67 261.2 376 43.6
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 2.7e-67 260.0 393 47.6
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 7.8e-67 258.5 388 43.3
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.0e-66 258.1 398 45.0
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 1.7e-66 257.3 366 45.6
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 2.3e-66 256.9 386 45.9
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 2.3e-66 256.9 376 46.0
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 5.1e-66 255.8 409 47.7
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 6.6e-66 255.4 367 43.1
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 6.6e-66 255.4 371 44.7
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 6.6e-66 255.4 365 45.5
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 1.1e-65 254.6 370 44.1
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 1.5e-65 254.2 385 43.6
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.3e-65 252.7 409 47.9
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 9.6e-65 251.5 412 49.8
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 9.6e-65 251.5 373 44.0
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 8.1e-64 248.4 385 46.5
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 1.8e-63 247.3 400 41.8
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.8e-63 247.3 411 49.6
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 4.0e-63 246.1 377 43.5
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 4.0e-63 246.1 377 43.5
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 5.3e-63 245.7 396 48.5
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 1.5e-62 244.2 382 45.3
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 2.0e-62 243.8 368 43.8
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 2.0e-62 243.8 371 45.6
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 2.2e-61 240.4 405 42.7
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 2.9e-61 240.0 367 44.1
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 4.9e-61 239.2 372 43.5
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 1.1e-60 238.0 380 42.6
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 2.4e-60 236.9 374 43.0
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 1.6e-59 234.2 385 39.7
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 2.7e-59 233.4 379 42.7
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 2.7e-59 233.4 367 43.9
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 2.7e-59 233.4 388 41.5
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 6.0e-59 232.3 388 41.5
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 1.3e-58 231.1 382 46.9
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 1.3e-58 231.1 385 40.5
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 8.7e-58 228.4 373 42.6
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 1.9e-57 227.3 370 42.2
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.6e-56 224.2 382 41.4
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 3.6e-56 223.0 384 39.3
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 1.1e-55 221.5 332 44.3
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 1.4e-55 221.1 207 58.5
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.4e-55 221.1 373 42.4
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 1.4e-55 221.1 333 44.1
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 1.8e-55 220.7 362 44.2
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.8e-55 220.7 367 45.8
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 1.5e-54 217.6 364 42.6
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 2.2e-53 213.8 392 40.8
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 2.2e-53 213.8 407 37.8
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 2.9e-53 213.4 366 43.7
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 1.1e-52 211.5 389 46.0
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 1.4e-52 211.1 387 45.2
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 1.4e-52 211.1 380 43.4
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 1.4e-52 211.1 380 43.4
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 1.4e-52 211.1 379 43.3
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 1.4e-52 211.1 413 38.5
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.9e-52 210.7 217 54.8
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 2.4e-52 210.3 362 41.2
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 3.2e-52 209.9 388 45.4
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 1.2e-51 208.0 379 43.0
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 2.7e-51 206.8 367 40.3
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 3.5e-51 206.5 380 42.9
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 3.5e-51 206.5 385 40.0
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 4.6e-51 206.1 388 46.1
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 7.9e-51 205.3 380 42.4
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 1.3e-50 204.5 378 39.9
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 1.3e-50 204.5 311 50.5
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 5.1e-50 202.6 401 38.9
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 5.1e-50 202.6 362 39.8
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 1.1e-49 201.4 363 39.7
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 7.4e-49 198.7 385 42.3
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 3.1e-47 193.4 316 43.0
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 4.0e-47 193.0 379 37.5
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 4.2e-44 183.0 390 41.0
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 2.7e-43 180.3 218 50.0
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 5.7e-41 172.6 391 40.9
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 1.4e-39 167.9 392 40.8
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 1.0e-37 161.8 378 33.3
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 1.0e-37 161.8 198 51.0
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 6.5e-37 159.1 214 43.0
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 1.9e-36 157.5 227 40.5
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 7.1e-36 155.6 388 41.5
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 7.1e-36 155.6 219 46.1
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 9.3e-36 155.2 390 41.3
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 2.1e-35 154.1 407 29.5
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 6.1e-35 152.5 227 41.4
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 1.8e-34 151.0 215 40.5
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 2.3e-34 150.6 218 43.1
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 3.9e-34 149.8 390 41.3
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 6.7e-34 149.1 223 43.9
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 8.7e-34 148.7 217 44.2
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 4.3e-33 146.4 214 43.0
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 7.4e-33 145.6 225 40.9
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 9.7e-33 145.2 219 42.9
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 1.3e-32 144.8 230 43.5
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 2.2e-32 144.1 203 43.3
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 3.7e-32 143.3 236 39.4
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 3.7e-32 143.3 232 41.4
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 1.8e-31 141.0 194 44.8
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 4.1e-31 139.8 215 39.5
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 2.6e-30 137.1 242 40.1
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 3.4e-30 136.7 221 39.8
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 3.4e-30 136.7 226 41.2
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 7.7e-30 135.6 227 43.2
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 1.0e-29 135.2 251 39.0
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.0e-29 135.2 219 41.6
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 3.8e-29 133.3 375 32.0
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 8.5e-29 132.1 416 32.5
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 3.2e-28 130.2 213 39.9
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.2e-28 129.8 238 36.1
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 4.2e-28 129.8 358 29.3
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.6e-27 127.9 233 36.5
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.6e-27 127.9 235 39.6
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 2.7e-27 127.1 239 38.1
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 6.1e-27 125.9 210 41.0
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 7.9e-27 125.6 218 39.0
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 1.8e-26 124.4 243 37.4
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 5.1e-26 122.9 407 31.0
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 2.0e-25 120.9 226 37.6
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 2.5e-25 120.6 210 36.7
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 1.4e-23 114.8 204 36.3
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 1.2e-19 101.7 344 28.5
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 6.7e-18 95.9 215 34.9
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 2.6e-17 94.0 136 42.6
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 4.4e-17 93.2 100 48.0
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 4.8e-16 89.7 158 36.1
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 4.8e-16 89.7 158 36.1
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 6.5e-13 79.3 88 50.0
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 8.5e-13 79.0 137 38.7
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 1.9e-12 77.8 47 70.2
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.4e-10 71.6 92 46.7
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.4e-10 71.6 192 35.4
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.5e-09 68.2 98 49.0
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 1.5e-09 68.2 51 56.9
MD16G1127600 Malus domestica HOM05D002407 ORTHO05D002476 2.0e-09 67.8 97 49.5
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 6.3e-08 62.8 78 50.0
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 7.0e-07 59.3 217 26.3


User provided reference genes

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