Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 0.0e+00 1163.3 586 100.0
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 0.0e+00 1080.5 587 93.0
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 4.1e-291 1004.2 590 85.6
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 4.4e-285 984.2 585 84.6
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 3.7e-284 981.1 595 83.2
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 2.4e-283 978.4 652 79.6
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 2.3e-281 971.8 596 82.6
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 2.3e-281 971.8 585 82.9
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 6.6e-281 970.3 598 81.9
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 8.6e-281 969.9 588 82.5
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 8.6e-281 969.9 591 83.2
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 6.2e-279 963.8 572 84.1
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 6.2e-279 963.8 588 82.5
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 8.1e-279 963.4 588 81.8
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 6.8e-278 960.3 586 82.4
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 8.9e-278 959.9 594 81.6
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 1.5e-277 959.1 579 82.9
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 2.6e-277 958.4 590 82.4
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 4.4e-277 957.6 591 80.7
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 7.5e-277 956.8 571 82.8
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 9.8e-277 956.4 586 81.9
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 9.8e-277 956.4 598 81.4
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 1.7e-276 955.7 590 81.4
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 2.2e-276 955.3 586 82.1
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 3.7e-276 954.5 590 81.4
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 3.7e-276 954.5 587 81.1
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 4.9e-276 954.1 589 81.3
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 4.9e-276 954.1 587 81.4
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 6.4e-276 953.7 585 81.2
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 1.1e-275 953.0 547 85.6
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 1.1e-275 953.0 589 81.0
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 2.4e-275 951.8 590 81.0
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 3.2e-275 951.4 559 84.1
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 4.1e-275 951.0 590 80.8
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 9.2e-275 949.9 593 80.6
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 1.2e-274 949.5 597 80.2
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 1.2e-274 949.5 589 80.1
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 1.6e-274 949.1 587 81.8
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 2.7e-274 948.3 551 84.6
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 3.5e-274 948.0 592 80.4
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 4.6e-274 947.6 572 82.7
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 7.8e-274 946.8 551 84.4
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 1.7e-273 945.7 585 80.7
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 2.3e-273 945.3 587 81.3
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 3.9e-273 944.5 588 80.6
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 3.9e-273 944.5 588 79.4
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 6.6e-273 943.7 590 80.5
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 6.6e-273 943.7 583 80.4
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 6.6e-273 943.7 591 80.2
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 6.6e-273 943.7 587 80.9
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 1.1e-272 943.0 589 80.5
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 2.5e-272 941.8 591 80.0
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 9.5e-272 939.9 585 80.5
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 1.2e-271 939.5 610 78.7
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 1.2e-271 939.5 568 82.6
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 1.2e-271 939.5 587 80.2
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 2.1e-271 938.7 587 80.2
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 2.8e-271 938.3 589 80.5
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 2.8e-271 938.3 587 80.7
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 3.6e-271 937.9 594 80.0
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 3.6e-271 937.9 587 80.4
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 4.7e-271 937.6 585 80.2
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 6.2e-271 937.2 585 79.3
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 6.8e-270 933.7 595 79.8
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 5.8e-269 930.6 589 79.6
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 1.3e-268 929.5 589 79.5
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 1.3e-268 929.5 589 80.3
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 2.2e-268 928.7 609 77.5
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.9e-268 928.3 597 79.6
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 2.9e-268 928.3 589 79.5
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 2.9e-268 928.3 576 80.4
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 4.9e-268 927.5 609 78.2
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 1.9e-267 925.6 589 80.0
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 2.7e-266 921.8 583 80.1
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 3.5e-266 921.4 614 77.7
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 1.9e-264 915.6 589 77.6
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 3.3e-264 914.8 585 78.6
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 4.3e-264 914.4 589 78.4
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 5.2e-262 907.5 613 75.7
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 2.0e-261 905.6 591 78.8
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 2.6e-261 905.2 587 78.4
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 1.7e-260 902.5 585 78.3
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 5.4e-259 897.5 596 75.7
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 1.0e-257 893.3 593 76.9
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 1.0e-257 893.3 572 78.8
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 1.3e-255 886.3 555 77.7
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 1.2e-253 879.8 583 77.7
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 1.2e-253 879.8 626 74.1
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 3.4e-253 878.2 549 78.0
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.1e-251 873.2 583 77.2
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.9e-251 872.5 587 76.3
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 6.0e-250 867.5 602 74.1
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 2.4e-246 855.5 541 76.9
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 4.0e-246 854.7 582 76.3
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 2.6e-245 852.0 582 75.9
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 1.4e-243 846.3 519 81.9
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 1.0e-241 840.1 479 85.2
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 5.1e-241 837.8 635 69.9
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 3.1e-238 828.6 607 72.8
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 4.5e-237 824.7 576 72.9
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 1.3e-236 823.2 584 73.1
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 2.7e-234 815.5 549 73.2
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 4.8e-231 804.7 540 72.2
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 7.9e-226 787.3 556 72.8
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 1.0e-225 786.9 463 82.3
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 8.7e-225 783.9 549 70.9
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 7.4e-224 780.8 542 70.7
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 5.3e-222 774.6 532 71.4
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 4.8e-215 751.5 480 78.5
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 2.2e-212 742.7 517 73.1
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 1.1e-206 723.8 591 66.2
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 1.7e-191 673.3 523 68.6
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 7.7e-189 664.5 544 61.9
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 7.7e-189 664.5 405 81.7
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 4.4e-168 595.5 410 75.6
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 6.2e-162 575.1 510 58.4
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 4.0e-161 572.4 554 57.6
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 1.3e-159 567.4 341 83.0
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 7.8e-157 558.1 356 78.7
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 1.7e-156 557.0 544 53.9
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 3.5e-133 479.6 555 48.5
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 6.7e-132 475.3 257 91.1
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 3.1e-105 386.7 251 77.7
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 1.1e-91 341.7 188 83.5
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 1.7e-71 274.6 210 66.2
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 7.2e-70 269.2 410 46.1
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 5.4e-57 226.5 198 58.1
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 2.1e-45 188.0 116 80.2
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 1.1e-44 185.7 139 73.4
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 3.1e-44 184.1 154 63.6
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 3.2e-41 174.1 102 81.4
SEGI_31768 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 1.6e-37 161.8 118 65.3
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 1.7e-31 141.7 314 32.2
Glyma.08G319400 Glycine max HOM05D004902 ORTHO05D029739 7.6e-27 126.3 76 84.2
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 2.4e-25 121.3 313 32.3
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 4.9e-18 97.1 58 82.8
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 1.1e-17 95.9 84 60.7
TPR.G39977 Trifolium pratense HOM05D004902 ORTHO05D006603 3.3e-14 84.3 42 85.7
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 1.1e-12 79.3 45 71.1
Lsat_1_v5_gn_3_69341 Lactuca sativa HOM05D004902 ORTHO05D006603 1.8e-12 78.6 126 42.1
Lsat_1_v5_gn_4_11281 Lactuca sativa HOM05D004902 ORTHO05D006603 5.3e-12 77.0 111 45.0
Ah.01g018890 Amaranthus hybridus HOM05D004902 ORTHO05D006603 2.6e-11 74.7 123 42.3
BcaNung03565 Brassica carinata HOM05D004902 ORTHO05D006603 1.7e-10 72.0 83 56.6
GSVIVG01021644001 Vitis vinifera HOM05D004902 ORTHO05D024725 3.2e-09 67.8 35 82.9
HanXRQChr08g0233831 Helianthus annuus HOM05D004902 ORTHO05D006603 4.2e-09 67.4 42 73.8
TWI38G0888 Tripterygium wilfordii HOM05D004902 ORTHO05D029739 1.6e-08 65.5 70 58.6
RcHm_v2.0_Chr5g0040621 Rosa chinensis HOM05D004902 ORTHO05D006603 6.0e-08 63.5 37 81.1
Lsat_1_v5_gn_0_720 Lactuca sativa HOM05D004902 ORTHO05D029739 5.1e-07 60.5 55 58.2
Lsat_1_v5_gn_2_18401 Lactuca sativa HOM05D004902 ORTHO05D233888 8.7e-07 59.7 112 38.4
Lsat_1_v5_gn_5_36061 Lactuca sativa HOM05D004902 ORTHO05D025756 1.5e-06 58.9 44 63.6


User provided reference genes

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