Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G060000 Populus trichocarpa HOM05D001393 ORTHO05D007477 0.0e+00 1302.0 679 100.0
Potri.001G265100 Populus trichocarpa HOM05D001393 ORTHO05D007477 2.3e-277 958.7 682 77.4
Sabra16G0162900 Salix brachista HOM05D001393 ORTHO05D007477 1.1e-260 903.3 678 72.9
Sabra09G0044200 Salix brachista HOM05D001393 ORTHO05D007477 3.4e-236 822.0 677 69.1
Manes.10G141000 Manihot esculenta HOM05D001393 ORTHO05D007477 4.8e-182 642.1 692 54.3
Cfa010777 Carpinus fangiana HOM05D001393 ORTHO05D007477 7.9e-145 518.5 641 50.5
CiPaw.14G000700 Carya illinoinensis HOM05D001393 ORTHO05D007477 4.7e-137 492.7 672 47.2
TWI73G0713 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 5.2e-136 489.2 628 47.0
Atru.chr11.2612 Acer truncatum HOM05D001393 ORTHO05D007477 6.7e-136 488.8 665 45.9
QL04p008271 Quercus lobata HOM05D001393 ORTHO05D007477 5.3e-133 479.2 683 47.0
Thecc.01G409700 Theobroma cacao HOM05D001393 ORTHO05D007477 1.3e-131 474.6 617 48.1
Duzib133G0545 Durio zibethinus HOM05D001393 ORTHO05D007477 8.5e-131 471.9 675 45.8
COL.COLO4_04862 Corchorus olitorius HOM05D001393 ORTHO05D007477 5.5e-130 469.2 695 43.9
Ciclev10030722m.g Citrus clementina HOM05D001393 ORTHO05D007477 9.4e-130 468.4 609 48.4
TWI09G0484 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 3.6e-129 466.5 677 44.2
Dinv09348 Davidia involucrata HOM05D001393 ORTHO05D007477 2.8e-126 456.8 683 45.4
Prupe.2G015000 Prunus persica HOM05D001393 ORTHO05D007477 4.8e-126 456.1 704 43.9
MD02G1309200 Malus domestica HOM05D001393 ORTHO05D007477 2.4e-125 453.8 688 43.9
GSVIVG01032121001 Vitis vinifera HOM05D001393 ORTHO05D007477 4.5e-124 449.5 646 46.7
RcHm_v2.0_Chr1g0316471 Rosa chinensis HOM05D001393 ORTHO05D007477 5.9e-124 449.1 680 44.0
vmacro13675 Vaccinium macrocarpon HOM05D001393 ORTHO05D007477 4.7e-121 439.5 651 44.4
Cpa.g.sc125.11 Carica papaya HOM05D001393 ORTHO05D007477 4.4e-119 433.0 642 45.6
Gohir.D08G164900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 2.8e-118 430.3 576 46.9
Gohir.A08G143900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 3.7e-118 429.9 580 47.1
FAN03G3510 Fragaria x ananassa HOM05D001393 ORTHO05D007477 1.8e-117 427.6 631 45.0
FAN06G3336 Fragaria x ananassa HOM05D001393 ORTHO05D007477 4.5e-116 422.9 621 43.2
FAN01G2686 Fragaria x ananassa HOM05D001393 ORTHO05D007477 1.7e-115 421.0 634 43.2
Gorai.004G171900 Gossypium raimondii HOM05D001393 ORTHO05D007477 2.3e-115 420.6 582 46.2
Actinidia21547 Actinidia chinensis HOM05D001393 ORTHO05D007477 3.8e-115 419.9 659 43.7
CSS0038724 Camellia sinensis var. sinensis HOM05D001393 ORTHO05D007477 4.2e-114 416.4 625 44.2
FvH4_7g01170 Fragaria vesca HOM05D001393 ORTHO05D007477 7.2e-114 415.6 621 42.8
FAN03G1765 Fragaria x ananassa HOM05D001393 ORTHO05D007477 1.4e-112 411.4 654 43.3
MD07G1012500 Malus domestica HOM05D001393 ORTHO05D007477 6.4e-110 402.5 675 41.9
Nn2g15307 Nelumbo nucifera HOM05D001393 ORTHO05D007477 3.4e-103 380.2 666 40.5
TAR623G0231 Trochodendron aralioides HOM05D001393 ORTHO05D007477 2.9e-102 377.1 563 44.4
CANSAT80G1121 Cannabis sativa HOM05D001393 ORTHO05D007477 1.5e-98 364.8 560 43.4
Eucgr.J01280 Eucalyptus grandis HOM05D001393 ORTHO05D007477 3.6e-97 360.1 558 42.1
PGSC0003DMG401023992 Solanum tuberosum HOM05D001393 ORTHO05D007477 2.3e-96 357.5 539 43.0
CsaV3_7G030970 Cucumis sativus L. HOM05D001393 ORTHO05D007477 3.1e-96 357.1 637 39.6
Sed0015725 Sechium edule HOM05D001393 ORTHO05D007477 1.2e-95 355.1 590 41.7
Solyc11g007060.2 Solanum lycopersicum HOM05D001393 ORTHO05D007477 2.6e-95 354.0 693 36.9
Sopen11g002980 Solanum pennellii HOM05D001393 ORTHO05D007477 3.4e-95 353.6 694 37.2
ClCG09G004070 Citrullus lanatus HOM05D001393 ORTHO05D007477 9.8e-95 352.1 628 40.4
MELO3C023559.2 Cucumis melo HOM05D001393 ORTHO05D007477 3.7e-94 350.1 622 40.0
PGR044G2234 Punica granatum HOM05D001393 ORTHO05D007477 3.5e-92 343.6 580 41.2
CAN.G1513.5 Capsicum annuum HOM05D001393 ORTHO05D007477 1.4e-88 331.6 586 39.1
Sc11g0009120 Simmondsia chinensis HOM05D001393 ORTHO05D007477 1.4e-88 331.6 570 40.0
MBI04_g36081_MAGBIO Magnolia biondii HOM05D001393 ORTHO05D007477 1.7e-86 324.7 630 37.8
Glyma.09G228900 Glycine max HOM05D001393 ORTHO05D007477 2.4e-85 320.9 689 35.8
MSTRG.28063 Avicennia marina HOM05D001393 ORTHO05D007477 5.4e-85 319.7 628 36.9
Oeu049495.1 Olea europaea HOM05D001393 ORTHO05D007477 5.4e-85 319.7 638 37.1
Nitab4.5_0000001g0230 Nicotiana tabacum HOM05D001393 ORTHO05D007477 9.2e-85 318.9 456 43.4
arahy.Tifrunner.gnm1.ann1.C4Q3NJ Arachis hypogaea HOM05D001393 ORTHO05D007477 2.1e-84 317.8 577 39.7
arahy.Tifrunner.gnm1.ann1.S6CP9J Arachis hypogaea HOM05D001393 ORTHO05D007477 4.6e-84 316.6 577 39.3
Nitab4.5_0001761g0330 Nicotiana tabacum HOM05D001393 ORTHO05D007477 1.3e-83 315.1 643 36.4
Migut.N01605 Erythranthe guttata HOM05D001393 ORTHO05D007477 2.3e-83 314.3 509 41.5
Cc02_g28120 Coffea canephora HOM05D001393 ORTHO05D007477 8.6e-83 312.4 504 41.1
Lj3g0000057 Lotus japonicus HOM05D001393 ORTHO05D007477 3.3e-82 310.5 728 35.7
Psat7g196360 Pisum sativum HOM05D001393 ORTHO05D007477 7.3e-82 309.3 594 37.2
SalBow7G4183 Salvia bowleyana HOM05D001393 ORTHO05D007477 7.3e-82 309.3 513 39.2
Ca_19581_v3 Cicer arietinum L. HOM05D001393 ORTHO05D007477 2.1e-81 307.8 648 36.4
VMungo1127G2137 Vigna mungo HOM05D001393 ORTHO05D007477 6.2e-81 306.2 651 35.8
DCAR_029678 Daucus carota HOM05D001393 ORTHO05D007477 1.4e-80 305.1 605 36.9
AUR62023073 Chenopodium quinoa HOM05D001393 ORTHO05D007477 2.4e-80 304.3 584 36.6
TPR.G3660 Trifolium pratense HOM05D001393 ORTHO05D007477 2.4e-80 304.3 719 33.8
SGA_v2.0_scaffold5G02964 Striga asiatica HOM05D001393 ORTHO05D007477 3.1e-80 303.9 538 39.0
Aqoxy1G00280 Aquilegia oxysepala HOM05D001393 ORTHO05D007477 1.2e-79 302.0 580 37.4
Glyma.12G007700 Glycine max HOM05D001393 ORTHO05D007477 3.8e-78 297.0 736 34.1
Phvul.011G009600 Phaseolus vulgaris HOM05D001393 ORTHO05D007477 6.4e-78 296.2 651 35.3
Medtr4g037495 Medicago truncatula HOM05D001393 ORTHO05D007477 3.5e-76 290.4 684 34.4
Duzib138G1437 Durio zibethinus HOM05D001393 ORTHO05D007477 1.1e-74 285.4 472 42.8
Peaxi162Scf00152g01336 Petunia axillaris HOM05D001393 ORTHO05D007477 1.3e-73 282.0 667 34.8
PSO339G5226 Papaver somniferum HOM05D001393 ORTHO05D007477 4.8e-73 280.0 705 33.3
Dinv43433 Davidia involucrata HOM05D001393 ORTHO05D007477 8.1e-73 279.3 288 56.6
MSTRG.5028 Avicennia marina HOM05D001393 ORTHO05D007477 1.8e-72 278.1 618 34.0
EL10Ac2g04339 Beta vulgaris HOM05D001393 ORTHO05D007477 1.2e-71 275.4 597 35.5
Hund21482 Selenicereus undatus HOM05D001393 ORTHO05D007477 4.4e-71 273.5 667 34.0
SalBow6G6124 Salvia bowleyana HOM05D001393 ORTHO05D007477 9.9e-71 272.3 480 37.3
Aa31LG11G7400 Aethionema arabicum HOM05D001393 ORTHO05D007477 1.1e-69 268.9 574 36.1
PSO384G0142 Papaver somniferum HOM05D001393 ORTHO05D007477 3.2e-69 267.3 721 32.7
Lalb_Chr19g0140311 Lupinus albus HOM05D001393 ORTHO05D007477 1.6e-68 265.0 674 32.9
AT5G47940 Arabidopsis thaliana HOM05D001393 ORTHO05D007477 6.0e-68 263.1 634 33.4
AL8G20040 Arabidopsis lyrata HOM05D001393 ORTHO05D007477 1.0e-67 262.3 629 32.6
Sp2g18440 Schrenkiella parvula HOM05D001393 ORTHO05D007477 1.0e-67 262.3 660 32.6
A06p39440 Brassica napus HOM05D001393 ORTHO05D007477 1.3e-67 261.9 645 33.3
BraA06t26859Z Brassica rapa HOM05D001393 ORTHO05D007477 1.3e-67 261.9 645 33.3
HanXRQChr09g0251311 Helianthus annuus HOM05D001393 ORTHO05D007477 8.7e-67 259.2 607 35.4
Carub.0008s0749 Capsella rubella HOM05D001393 ORTHO05D007477 2.5e-66 257.7 644 32.1
AUR62009391 Chenopodium quinoa HOM05D001393 ORTHO05D007477 4.3e-66 256.9 688 32.4
BolC7t44402H Brassica oleracea HOM05D001393 ORTHO05D007477 2.4e-64 251.1 642 34.1
C07p38830 Brassica napus HOM05D001393 ORTHO05D007477 5.3e-64 250.0 642 34.0
Thhalv10003674m.g Eutrema salsugineum HOM05D001393 ORTHO05D007477 1.5e-63 248.4 651 34.4
CARHR184320 Cardamine hirsuta HOM05D001393 ORTHO05D007477 2.0e-63 248.1 625 34.1
Lsat_1_v5_gn_1_106561 Lactuca sativa HOM05D001393 ORTHO05D007477 1.8e-56 224.9 419 38.9
BcaC06g30834 Brassica carinata HOM05D001393 ORTHO05D007477 4.3e-50 203.8 658 30.4
CDE05G0268 Ceratophyllum demersum HOM05D001393 ORTHO05D007477 9.6e-50 202.6 420 36.0
unitig_578.g16692 Utricularia gibba HOM05D001393 ORTHO05D007477 6.3e-49 199.9 519 33.3
Ah.10g038800 Amaranthus hybridus HOM05D001393 ORTHO05D007477 2.7e-44 184.5 352 36.4
Zm00001eb324710 Zea mays HOM05D001393 ORTHO05D007477 5.1e-43 180.3 520 28.5
Lj9A633T62 Lonicera japonica HOM05D001393 ORTHO05D007477 6.7e-43 179.9 398 36.9
Zm00001eb107220 Zea mays HOM05D001393 ORTHO05D007477 2.5e-42 177.9 524 30.5
Os07g0569000 Oryza sativa ssp. japonica HOM05D001393 ORTHO05D007477 5.7e-42 176.8 522 30.1
FAN10G3273 Fragaria x ananassa HOM05D001393 ORTHO05D007477 4.8e-41 173.7 162 54.9
HPP92_015712 Vanilla planifolia HOM05D001393 ORTHO05D007477 1.4e-40 172.2 622 29.6
HPP92_026649 Vanilla planifolia HOM05D001393 ORTHO05D007477 1.5e-39 168.7 619 29.4
ATR0332G069 Amborella trichopoda HOM05D001393 ORTHO05D007477 4.5e-39 167.2 677 28.1
ECA248G1228 Erigeron canadensis HOM05D001393 ORTHO05D007477 6.1e-36 156.8 372 34.9
Eucgr.J01288 Eucalyptus grandis HOM05D001393 ORTHO05D007477 1.1e-13 82.8 173 33.5
Dinv43434 Davidia involucrata HOM05D001393 ORTHO05D007477 8.8e-11 73.2 120 44.2
SEGI_29291 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 7.5e-10 70.1 448 22.8
SEGI_24281 Sequoiadendron giganteum HOM05D000890 ORTHO05D007477 1.6e-07 62.4 184 31.0


User provided reference genes

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