Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G059600 Populus trichocarpa HOM05D006111 ORTHO05D007683 5.6e-217 757.3 377 100.0
Potri.009G059800 Populus trichocarpa HOM05D006111 ORTHO05D007683 1.3e-205 719.5 377 95.5
Manes.10G140800 Manihot esculenta HOM05D006111 ORTHO05D007683 7.9e-187 657.1 377 85.4
Sabra09G0044000 Salix brachista HOM05D006111 ORTHO05D007683 5.1e-186 654.4 426 80.5
Gohir.D08G164600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 5.2e-170 601.3 383 77.0
Gorai.004G171600 Gossypium raimondii HOM05D006111 ORTHO05D007683 5.2e-170 601.3 383 77.0
Eucgr.J01211 Eucalyptus grandis HOM05D006111 ORTHO05D007683 1.2e-169 600.1 384 76.8
Duzib268G0420 Durio zibethinus HOM05D006111 ORTHO05D007683 2.0e-169 599.4 383 78.3
CSS0012829 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 1.4e-167 593.2 383 78.3
CSS0034733 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 1.4e-167 593.2 383 78.3
TWI09G1338 Tripterygium wilfordii HOM05D006111 ORTHO05D007683 2.4e-167 592.4 383 77.5
Dinv43431 Davidia involucrata HOM05D006111 ORTHO05D007683 3.1e-167 592.0 386 77.2
MD02G1308600 Malus domestica HOM05D006111 ORTHO05D007683 3.1e-167 592.0 383 77.3
Thecc.01G409400 Theobroma cacao HOM05D006111 ORTHO05D007683 5.4e-167 591.3 384 77.1
RcHm_v2.0_Chr1g0316521 Rosa chinensis HOM05D006111 ORTHO05D007683 1.6e-166 589.7 383 77.0
CiPaw.13G006200 Carya illinoinensis HOM05D006111 ORTHO05D007683 2.7e-166 589.0 383 77.5
Prupe.2G015400 Prunus persica HOM05D006111 ORTHO05D007683 3.5e-166 588.6 383 77.3
QL04p008312 Quercus lobata HOM05D006111 ORTHO05D007683 7.7e-166 587.4 383 76.5
MD07G1013000 Malus domestica HOM05D006111 ORTHO05D007683 2.9e-165 585.5 383 76.8
Lalb_Chr01g0015831 Lupinus albus HOM05D006111 ORTHO05D007683 8.5e-165 583.9 381 76.6
Atru.chr11.2607 Acer truncatum HOM05D006111 ORTHO05D007683 1.5e-164 583.2 386 77.5
PGR044G0412 Punica granatum HOM05D006111 ORTHO05D007683 1.5e-164 583.2 393 74.3
CsaV3_7G030960 Cucumis sativus L. HOM05D006111 ORTHO05D007683 2.5e-164 582.4 385 77.7
EL10Ac2g04342 Beta vulgaris HOM05D006111 ORTHO05D007683 7.2e-164 580.9 392 75.3
ClCG09G004060 Citrullus lanatus HOM05D006111 ORTHO05D007683 7.2e-164 580.9 386 75.9
MELO3C023560.2 Cucumis melo HOM05D006111 ORTHO05D007683 9.4e-164 580.5 401 75.3
FAN03G2464 Fragaria x ananassa HOM05D006111 ORTHO05D007683 1.0e-162 577.0 386 75.6
FvH4_7g01190 Fragaria vesca HOM05D006111 ORTHO05D007683 1.4e-162 576.6 384 76.0
FAN06G2641 Fragaria x ananassa HOM05D006111 ORTHO05D007683 1.4e-162 576.6 384 76.0
Sed0027336 Sechium edule HOM05D006111 ORTHO05D007683 2.3e-162 575.9 386 75.4
FAN10G2658 Fragaria x ananassa HOM05D006111 ORTHO05D007683 3.0e-162 575.5 386 75.4
FAN01G0043 Fragaria x ananassa HOM05D006111 ORTHO05D007683 1.2e-161 573.5 386 75.4
THA.LOC104819080 Tarenaya hassleriana HOM05D006111 ORTHO05D007683 1.5e-161 573.2 386 74.6
Ah.10g038770 Amaranthus hybridus HOM05D006111 ORTHO05D007683 2.0e-161 572.8 389 73.3
TAR623G0061 Trochodendron aralioides HOM05D006111 ORTHO05D007683 2.6e-161 572.4 385 75.1
Ciclev10031806m.g Citrus clementina HOM05D006111 ORTHO05D007683 7.5e-161 570.9 378 75.1
Peaxi162Scf00818g00127 Petunia axillaris HOM05D006111 ORTHO05D007683 7.5e-161 570.9 396 71.7
CAN.G666.14 Capsicum annuum HOM05D006111 ORTHO05D007683 1.7e-160 569.7 384 74.2
Aqoxy1G00288 Aquilegia oxysepala HOM05D006111 ORTHO05D007683 8.3e-160 567.4 388 72.9
Sc10g0000130 Simmondsia chinensis HOM05D006111 ORTHO05D007683 8.3e-160 567.4 390 72.8
Nn7g36241 Nelumbo nucifera HOM05D006111 ORTHO05D007683 3.1e-159 565.5 389 73.3
Hund21484 Selenicereus undatus HOM05D006111 ORTHO05D007683 9.2e-159 563.9 393 72.5
Migut.N01606 Erythranthe guttata HOM05D006111 ORTHO05D007683 2.0e-158 562.8 381 73.0
Oeu014586.1 Olea europaea HOM05D006111 ORTHO05D007683 2.0e-158 562.8 383 73.9
PSO339G0604 Papaver somniferum HOM05D006111 ORTHO05D007683 2.7e-158 562.4 386 72.5
COL.COLO4_04864 Corchorus olitorius HOM05D006111 ORTHO05D007683 3.5e-158 562.0 383 74.2
PSO384G4428 Papaver somniferum HOM05D006111 ORTHO05D007683 4.5e-158 561.6 386 73.1
SalBow6G4116 Salvia bowleyana HOM05D006111 ORTHO05D007683 7.7e-158 560.8 386 73.3
SalBow6G6970 Salvia bowleyana HOM05D006111 ORTHO05D007683 2.3e-157 559.3 386 73.1
Thhalv10020943m.g Eutrema salsugineum HOM05D006111 ORTHO05D007683 6.6e-157 557.8 383 73.9
AL3G19390 Arabidopsis lyrata HOM05D006111 ORTHO05D007683 1.1e-156 557.0 381 74.5
Sp3g06920 Schrenkiella parvula HOM05D006111 ORTHO05D007683 2.5e-156 555.8 383 72.6
AT3G08010 Arabidopsis thaliana HOM05D006111 ORTHO05D007683 1.6e-155 553.1 381 74.0
MBI02_g05669_MAGBIO Magnolia biondii HOM05D006111 ORTHO05D007683 2.1e-155 552.7 388 70.9
CARHR082760 Cardamine hirsuta HOM05D006111 ORTHO05D007683 2.8e-155 552.4 380 73.4
MSTRG.17026 Avicennia marina HOM05D006111 ORTHO05D007683 8.0e-155 550.8 392 68.9
Carub.0003s0759 Capsella rubella HOM05D006111 ORTHO05D007683 8.0e-155 550.8 381 73.8
Aa31LG5G18560 Aethionema arabicum HOM05D006111 ORTHO05D007683 1.8e-154 549.7 375 73.1
Lj3g0026579 Lotus japonicus HOM05D006111 ORTHO05D007683 2.3e-154 549.3 385 70.9
arahy.Tifrunner.gnm1.ann1.M31XXH Arachis hypogaea HOM05D006111 ORTHO05D007683 3.0e-154 548.9 383 74.2
arahy.Tifrunner.gnm1.ann1.YZE6TL Arachis hypogaea HOM05D006111 ORTHO05D007683 3.0e-154 548.9 383 74.2
Sopen02g001570 Solanum pennellii HOM05D006111 ORTHO05D007683 6.8e-154 547.7 323 79.9
CANSAT80G0546 Cannabis sativa HOM05D006111 ORTHO05D007683 8.9e-154 547.4 388 71.9
Nitab4.5_0001001g0030 Nicotiana tabacum HOM05D006111 ORTHO05D007683 1.2e-153 547.0 381 71.9
Solyc02g005200.4 Solanum lycopersicum HOM05D006111 ORTHO05D007683 4.4e-153 545.0 323 79.3
DCAR_015173 Daucus carota HOM05D006111 ORTHO05D007683 5.7e-153 544.7 385 72.5
GSVIVG01032129001 Vitis vinifera HOM05D006111 ORTHO05D007683 2.2e-152 542.7 299 84.9
C03p43240 Brassica napus HOM05D006111 ORTHO05D007683 4.9e-152 541.6 377 71.1
PGSC0003DMG400006635 Solanum tuberosum HOM05D006111 ORTHO05D007683 6.4e-152 541.2 366 73.0
vmacro21191 Vaccinium macrocarpon HOM05D006111 ORTHO05D007683 3.2e-151 538.9 459 63.0
Cc01_g06700 Coffea canephora HOM05D006111 ORTHO05D007683 7.0e-151 537.7 371 71.7
HanXRQChr09g0260521 Helianthus annuus HOM05D006111 ORTHO05D007683 3.5e-150 535.4 379 71.2
SGA_v2.0_scaffold24G10670 Striga asiatica HOM05D006111 ORTHO05D007683 3.0e-149 532.3 389 69.4
Lsat_1_v5_gn_4_136121 Lactuca sativa HOM05D006111 ORTHO05D007683 7.3e-148 527.7 383 70.2
Cfa010790 Carpinus fangiana HOM05D006111 ORTHO05D007683 3.1e-146 522.3 386 70.2
Ca_14461_v3 Cicer arietinum L. HOM05D006111 ORTHO05D007683 3.1e-146 522.3 384 70.1
Rhsim01G0128600 Rhododendron simsii HOM05D006111 ORTHO05D007683 1.3e-144 516.9 491 58.0
Phvul.005G024500 Phaseolus vulgaris HOM05D006111 ORTHO05D007683 2.2e-144 516.2 379 68.6
Glyma.10G089700 Glycine max HOM05D006111 ORTHO05D007683 4.1e-143 511.9 383 67.9
Medtr3g030950 Medicago truncatula HOM05D006111 ORTHO05D007683 1.6e-142 510.0 384 68.0
ATR0332G055 Amborella trichopoda HOM05D006111 ORTHO05D007683 2.7e-142 509.2 326 74.2
Glyma.15G275900 Glycine max HOM05D006111 ORTHO05D007683 6.0e-142 508.1 382 68.1
Cpa.g.sc125.25 Carica papaya HOM05D006111 ORTHO05D007683 1.0e-141 507.3 426 64.3
unitig_749.g14328 Utricularia gibba HOM05D006111 ORTHO05D007683 1.0e-141 507.3 361 67.3
Lj5C169G9 Lonicera japonica HOM05D006111 ORTHO05D007683 1.3e-141 506.9 283 83.7
VMungo1080G1123 Vigna mungo HOM05D006111 ORTHO05D007683 3.0e-141 505.8 379 68.1
AUR62043480 Chenopodium quinoa HOM05D006111 ORTHO05D007683 1.2e-139 500.4 390 66.2
Nitab4.5_0000139g0200 Nicotiana tabacum HOM05D006111 ORTHO05D007683 5.2e-138 495.0 383 66.8
HPP92_009763 Vanilla planifolia HOM05D006111 ORTHO05D007683 1.2e-137 493.8 380 66.3
AUR62009394 Chenopodium quinoa HOM05D006111 ORTHO05D007683 9.2e-135 484.2 393 64.1
Psat5g208360 Pisum sativum HOM05D006111 ORTHO05D007683 6.0e-134 481.5 396 63.6
AUR62023076 Chenopodium quinoa HOM05D006111 ORTHO05D007683 3.0e-133 479.2 390 63.6
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 5.1e-133 478.4 284 80.3
Psat3g069160 Pisum sativum HOM05D006111 ORTHO05D007683 4.7e-131 471.9 296 75.7
Os02g0610800 Oryza sativa ssp. japonica HOM05D006111 ORTHO05D007683 9.9e-129 464.2 306 70.9
Actinidia21546 Actinidia chinensis HOM05D006111 ORTHO05D007683 1.1e-122 444.1 383 63.7
CDE05G1285 Ceratophyllum demersum HOM05D006111 ORTHO05D007683 1.5e-116 423.7 352 63.9
Haze_03183 Corylus avellana HOM05D006111 ORTHO05D007683 1.9e-116 423.3 320 69.7
Pp3c6_22710 Physcomitrium patens HOM05D006111 ORTHO05D007683 1.2e-110 404.1 296 63.9
Pp3c5_6760 Physcomitrium patens HOM05D006111 ORTHO05D007683 7.9e-110 401.4 293 63.5
BcaB03g11554 Brassica carinata HOM05D006111 ORTHO05D007683 4.3e-108 395.6 228 81.1
Mapoly0153s0005 Marchantia polymorpha HOM05D006111 ORTHO05D007683 1.8e-106 390.2 293 61.1
A03p35610 Brassica napus HOM05D006111 ORTHO05D007683 3.9e-101 372.5 213 81.2
BolC3t16593H Brassica oleracea HOM05D006111 ORTHO05D007683 3.9e-101 372.5 213 81.2
BraA03t12736Z Brassica rapa HOM05D006111 ORTHO05D007683 3.9e-101 372.5 213 81.2
AagrBONN_evm.TU.Sc2ySwM_344.1799 Anthoceros agrestis HOM05D006111 ORTHO05D007683 1.1e-100 370.9 293 59.0
Gohir.A08G143600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 4.8e-99 365.5 250 71.6
Zm00001eb246820 Zea mays HOM05D006111 ORTHO05D007683 2.0e-97 360.1 231 71.9
Medtr3g030975 Medicago truncatula HOM05D006111 ORTHO05D007683 3.0e-93 346.3 213 77.0
Actinidia20661 Actinidia chinensis HOM05D006111 ORTHO05D007683 1.3e-88 330.9 292 61.0
SMO353G0296 Selaginella moellendorffii HOM05D006111 ORTHO05D007683 7.4e-84 315.1 290 51.4
TPR.G35304 Trifolium pratense HOM05D006111 ORTHO05D007683 1.4e-77 294.3 230 64.3
PRCOL_00003534 Prasinoderma coloniale HOM05D006111 ORTHO05D007683 6.3e-75 285.4 304 45.7
Cre17.g702500 Chlamydomonas reinhardtii HOM05D006111 ORTHO05D007683 3.1e-74 283.1 285 47.4
HPP92_009753 Vanilla planifolia HOM05D006111 ORTHO05D007683 1.0e-72 278.1 177 75.1
MCO10G268 Micromonas commoda HOM05D006111 ORTHO05D007683 8.8e-69 265.0 278 46.8
Prupe.2G016000 Prunus persica HOM05D006111 ORTHO05D007683 1.7e-67 260.8 157 81.5
QL04p008446 Quercus lobata HOM05D006111 ORTHO05D007683 7.0e-58 228.8 135 83.0
A03p35600 Brassica napus HOM05D006111 ORTHO05D007683 2.8e-43 180.3 166 62.0
CBR_g5582 Chara braunii HOM05D006111 ORTHO05D007683 5.4e-42 176.0 161 52.8
SEGI_32608 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 3.8e-40 169.9 181 52.5
HanXRQChr12g0362881 Helianthus annuus HOM05D006111 ORTHO05D007683 4.4e-36 156.4 108 69.4
HPP92_009752 Vanilla planifolia HOM05D006111 ORTHO05D007683 5.4e-34 149.4 165 51.5
CBR_g5588 Chara braunii HOM05D006111 ORTHO05D007683 8.6e-32 142.1 97 64.9
SEGI_00353 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 2.4e-26 124.0 87 65.5
Medtr8g104810 Medicago truncatula HOM05D006111 ORTHO05D007683 2.8e-22 110.5 64 78.1
C03p43260 Brassica napus HOM05D006111 ORTHO05D007683 7.8e-17 92.4 48 87.5
BolC3t16595H Brassica oleracea HOM05D006111 ORTHO05D007683 7.8e-17 92.4 48 87.5
TPR.G36152 Trifolium pratense HOM05D006111 ORTHO05D007683 3.1e-13 80.5 109 47.7
TAR628G1549 Trochodendron aralioides HOM05D006111 ORTHO05D414729 2.7e-09 67.4 41 78.0


User provided reference genes

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