Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.2e-59 233.0 127 100.0
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 6.2e-43 177.6 127 74.8
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 2.4e-42 175.6 128 70.3
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 6.9e-34 147.5 114 65.8
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 9.0e-34 147.1 108 68.5
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 1.1e-31 140.2 128 59.4
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 7.9e-30 134.0 128 61.7
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 3.7e-27 125.2 125 52.0
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 1.1e-26 123.6 127 54.3
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 5.3e-26 121.3 126 54.8
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 6.9e-26 120.9 126 54.8
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.5e-25 119.8 126 54.8
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 1.5e-25 119.8 128 57.8
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 5.8e-25 117.9 127 54.3
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 1.7e-24 116.3 133 53.4
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 4.9e-24 114.8 125 48.8
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 3.2e-23 112.1 105 57.1
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 5.5e-23 111.3 126 50.0
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.2e-22 110.2 125 50.4
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.7e-22 109.0 86 66.3
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.7e-22 109.0 125 49.6
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 4.6e-22 108.2 86 66.3
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 2.3e-21 105.9 125 45.6
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 3.9e-21 105.1 125 49.6
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 3.9e-21 105.1 126 50.8
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 6.7e-21 104.4 80 62.5
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 1.5e-20 103.2 108 50.9
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 4.3e-20 101.7 135 50.4
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 5.7e-20 101.3 130 49.2
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 5.7e-20 101.3 132 47.0
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 1.6e-19 99.8 135 44.4
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 2.2e-19 99.4 125 47.2
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 2.8e-19 99.0 114 47.4
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 6.3e-19 97.8 125 48.0
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 8.2e-19 97.4 132 45.5
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 8.2e-19 97.4 136 46.3
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 8.2e-19 97.4 94 52.1
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 1.1e-18 97.1 82 54.9
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 1.8e-18 96.3 77 67.5
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 1.8e-18 96.3 125 47.2
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.8e-18 96.3 130 48.5
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.8e-18 96.3 134 50.0
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 2.4e-18 95.9 64 71.9
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 3.1e-18 95.5 127 41.7
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 3.1e-18 95.5 70 67.1
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 3.1e-18 95.5 107 48.6
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 3.1e-18 95.5 80 56.2
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 3.1e-18 95.5 80 56.2
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 5.3e-18 94.7 86 57.0
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 5.3e-18 94.7 75 65.3
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 5.3e-18 94.7 73 61.6
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 5.3e-18 94.7 127 46.5
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 5.3e-18 94.7 131 44.3
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 6.9e-18 94.4 134 47.0
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 9.0e-18 94.0 63 71.4
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 1.2e-17 93.6 57 75.4
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 1.5e-17 93.2 106 52.8
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 2.0e-17 92.8 132 42.4
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 2.0e-17 92.8 132 42.4
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 2.6e-17 92.4 63 69.8
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 4.5e-17 91.7 105 48.6
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 5.9e-17 91.3 66 63.6
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.0e-16 90.5 107 45.8
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 2.9e-16 89.0 107 47.7
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 3.8e-16 88.6 68 60.3
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 5.0e-16 88.2 110 46.4
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 5.0e-16 88.2 99 52.5
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 5.0e-16 88.2 89 49.4
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 6.5e-16 87.8 60 65.0
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 1.1e-15 87.0 56 71.4
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 1.9e-15 86.3 53 75.5
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.9e-15 86.3 122 46.7
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 1.9e-15 86.3 130 43.1
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 1.9e-15 86.3 94 46.8
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 4.2e-15 85.1 56 66.1
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 4.2e-15 85.1 134 42.5
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 4.2e-15 85.1 60 63.3
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 4.2e-15 85.1 52 69.2
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 4.2e-15 85.1 74 54.1
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 7.2e-15 84.3 60 65.0
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 7.2e-15 84.3 61 67.2
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 9.4e-15 84.0 90 51.1
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 9.4e-15 84.0 110 44.5
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.2e-14 83.6 78 56.4
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 1.2e-14 83.6 142 38.0
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 1.6e-14 83.2 107 45.8
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 1.6e-14 83.2 53 71.7
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 2.7e-14 82.4 63 63.5
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 3.6e-14 82.0 109 45.9
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 6.1e-14 81.3 108 44.4
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 7.9e-14 80.9 124 41.9
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 7.9e-14 80.9 105 42.9
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 7.9e-14 80.9 67 56.7
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 1.0e-13 80.5 65 58.5
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.4e-13 80.1 54 61.1
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 1.8e-13 79.7 105 45.7
MELO3C015194.2 Cucumis melo HOM05D003595 ORTHO05D004132 2.3e-13 79.3 57 68.4
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 2.3e-13 79.3 63 60.3
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 3.0e-13 79.0 105 40.0
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 3.0e-13 79.0 84 48.8
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 3.0e-13 79.0 54 59.3
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 3.9e-13 78.6 126 36.5
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 8.8e-13 77.4 56 60.7
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 1.1e-12 77.0 53 64.2
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 1.1e-12 77.0 84 50.0
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 1.5e-12 76.6 52 65.4
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 1.5e-12 76.6 125 37.6
CsaV3_1G042810 Cucumis sativus L. HOM05D003595 ORTHO05D004132 2.5e-12 75.9 56 67.9
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 3.3e-12 75.5 53 62.3
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 3.3e-12 75.5 55 58.2
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 3.3e-12 75.5 55 61.8
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 3.3e-12 75.5 60 61.7
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 4.3e-12 75.1 55 63.6
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 4.3e-12 75.1 57 57.9
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 5.7e-12 74.7 132 35.6
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 5.7e-12 74.7 98 39.8
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 7.4e-12 74.3 108 44.4
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 7.4e-12 74.3 108 44.4
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 7.4e-12 74.3 108 44.4
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 7.4e-12 74.3 52 63.5
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 7.4e-12 74.3 59 61.0
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.3e-11 73.6 56 55.4
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 1.3e-11 73.6 52 61.5
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 1.3e-11 73.6 52 61.5
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 1.3e-11 73.6 52 61.5
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 1.3e-11 73.6 52 61.5
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 1.3e-11 73.6 52 61.5
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 1.3e-11 73.6 55 60.0
Migut.D00603 Erythranthe guttata HOM05D003595 ORTHO05D004132 1.3e-11 73.6 124 39.5
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 1.3e-11 73.6 84 48.8
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 1.7e-11 73.2 87 42.5
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 1.7e-11 73.2 52 63.5
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 1.7e-11 73.2 54 64.8
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 2.2e-11 72.8 52 61.5
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 2.2e-11 72.8 108 41.7
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 4.8e-11 71.6 110 43.6
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 4.8e-11 71.6 50 64.0
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 6.3e-11 71.2 50 64.0
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 6.3e-11 71.2 55 58.2
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 6.3e-11 71.2 52 61.5
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 6.3e-11 71.2 123 38.2
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 6.3e-11 71.2 55 58.2
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 6.3e-11 71.2 55 58.2
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 8.2e-11 70.9 51 62.7
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 8.2e-11 70.9 100 42.0
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 8.2e-11 70.9 49 63.3
CiPaw.09G036200 Carya illinoinensis HOM05D003595 ORTHO05D004132 8.2e-11 70.9 61 55.7
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 8.2e-11 70.9 49 61.2
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 1.1e-10 70.5 123 38.2
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 1.1e-10 70.5 120 38.3
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 1.1e-10 70.5 50 64.0
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 1.4e-10 70.1 56 55.4
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 1.8e-10 69.7 51 62.7
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 1.8e-10 69.7 52 57.7
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 2.4e-10 69.3 54 53.7
Manes.07G063550 Manihot esculenta HOM05D003595 ORTHO05D004132 2.4e-10 69.3 59 54.2
Sed0028187 Sechium edule HOM05D003595 ORTHO05D004132 3.1e-10 68.9 49 65.3
arahy.Tifrunner.gnm1.ann1.IAUU74 Arachis hypogaea HOM05D003595 ORTHO05D004132 5.3e-10 68.2 62 53.2
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 6.9e-10 67.8 51 58.8
Ah.04g161940 Amaranthus hybridus HOM05D000545 ORTHO05D000539 9.1e-10 67.4 54 55.6
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 9.1e-10 67.4 110 42.7
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 9.1e-10 67.4 110 42.7
SGA_v2.0_scaffold247G44878 Striga asiatica HOM05D003595 ORTHO05D004132 9.1e-10 67.4 59 55.9
Glyma.10G100700 Glycine max HOM05D003595 ORTHO05D004132 1.2e-09 67.0 89 43.8
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 1.5e-09 66.6 109 41.3
Migut.J01773 Erythranthe guttata HOM05D003595 ORTHO05D004132 2.0e-09 66.2 57 57.9
Lalb_Chr17g0349061 Lupinus albus HOM05D003595 ORTHO05D004132 2.0e-09 66.2 117 37.6
Sc09g0000730 Simmondsia chinensis HOM05D003595 ORTHO05D004132 3.4e-09 65.5 53 56.6
Lalb_Chr04g0247411 Lupinus albus HOM05D003595 ORTHO05D004132 4.5e-09 65.1 86 40.7
Lalb_Chr04g0247651 Lupinus albus HOM05D003595 ORTHO05D004132 4.5e-09 65.1 86 40.7
Aqoxy2G00199 Aquilegia oxysepala HOM05D003595 ORTHO05D004132 5.9e-09 64.7 91 40.7
arahy.Tifrunner.gnm1.ann1.8RT1B2 Arachis hypogaea HOM05D003595 ORTHO05D004132 5.9e-09 64.7 55 54.5
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 1.7e-08 63.2 61 50.8
ATR0332G104 Amborella trichopoda HOM05D003595 ORTHO05D004132 5.0e-08 61.6 123 37.4
Ciclev10006718m.g Citrus clementina HOM05D003595 ORTHO05D004132 1.1e-07 60.5 50 56.0
Atru.chr1.1053 Acer truncatum HOM05D003595 ORTHO05D004132 3.2e-07 58.9 64 46.9
Aa31LG10G3530 Aethionema arabicum HOM05D003595 ORTHO05D004132 9.4e-07 57.4 44 56.8
TWI12G0144 Tripterygium wilfordii HOM05D002383 ORTHO05D002515 9.4e-07 57.4 63 50.8
unitig_8.g2994 Utricularia gibba HOM05D003595 ORTHO05D004132 2.1e-06 56.2 53 50.9
Atru.chr11.2114 Acer truncatum HOM05D002383 ORTHO05D002515 4.7e-06 55.1 64 46.9
Atru.chr11.2129 Acer truncatum HOM05D002383 ORTHO05D002515 4.7e-06 55.1 64 46.9
Gohir.A11G311600 Gossypium hirsutum HOM05D003595 ORTHO05D004132 4.7e-06 55.1 58 48.3
Gohir.D11G328300 Gossypium hirsutum HOM05D003595 ORTHO05D004132 6.1e-06 54.7 58 48.3
Gorai.007G359500 Gossypium raimondii HOM05D003595 ORTHO05D004132 6.1e-06 54.7 58 48.3
TWI36G1091 Tripterygium wilfordii HOM05D002383 ORTHO05D002515 6.1e-06 54.7 62 46.8


User provided reference genes

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