Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G051100 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1964.5 941 100.0
Potri.001G255700 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1732.6 941 86.9
Sabra09G0037200 Salix brachista HOM05D006404 ORTHO05D008170 0.0e+00 1708.3 908 90.3
Sabra16G0156500 Salix brachista HOM05D006404 ORTHO05D008170 0.0e+00 1568.1 908 82.6
Manes.06G162300 Manihot esculenta HOM05D006404 ORTHO05D008170 0.0e+00 1482.2 946 74.5
QL01p004100 Quercus lobata HOM05D006404 ORTHO05D008170 0.0e+00 1431.4 946 71.4
Ciclev10014162m.g Citrus clementina HOM05D006404 ORTHO05D008170 0.0e+00 1425.6 947 71.0
Cfa009810 Carpinus fangiana HOM05D006404 ORTHO05D008170 0.0e+00 1418.3 949 70.3
Thecc.09G239000 Theobroma cacao HOM05D006404 ORTHO05D008170 0.0e+00 1393.3 948 69.8
GSVIVG01031534001 Vitis vinifera HOM05D006404 ORTHO05D008170 0.0e+00 1375.1 931 70.1
MD03G1172000 Malus domestica HOM05D006404 ORTHO05D008170 0.0e+00 1367.1 954 69.2
FvH4_3g28450 Fragaria vesca HOM05D006404 ORTHO05D008170 0.0e+00 1366.7 950 68.0
FAN16G0405 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1366.7 950 68.3
RcHm_v2.0_Chr5g0053011 Rosa chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1365.1 949 68.2
FAN11G2181 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1362.8 948 67.9
CSS0037938 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 0.0e+00 1352.4 951 67.1
Gorai.009G074000 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1352.0 944 67.8
FAN21G1559 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1341.6 972 66.3
TAR633G0603 Trochodendron aralioides HOM05D006404 ORTHO05D008170 0.0e+00 1339.3 942 67.9
TWI32G0006 Tripterygium wilfordii HOM05D006404 ORTHO05D008170 0.0e+00 1309.3 948 66.6
Haze_23174 Corylus avellana HOM05D006404 ORTHO05D008170 0.0e+00 1295.0 939 66.6
Rhsim13G0217700 Rhododendron simsii HOM05D006404 ORTHO05D008170 0.0e+00 1291.6 993 63.4
Duzib150G0746 Durio zibethinus HOM05D006404 ORTHO05D008170 0.0e+00 1290.8 949 66.3
Gohir.D09G109000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 0.0e+00 1278.8 948 65.9
Gorai.006G126600 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1278.1 948 65.8
COL.COLO4_36457 Corchorus olitorius HOM05D006404 ORTHO05D008170 0.0e+00 1276.2 845 70.7
Eucgr.B03709 Eucalyptus grandis HOM05D006404 ORTHO05D008170 0.0e+00 1251.9 923 64.0
Cc01_g05020 Coffea canephora HOM05D006404 ORTHO05D008170 0.0e+00 1243.4 936 62.2
Nn7g36358 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1242.6 945 62.5
Nn2g15163 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1237.6 924 63.3
Prupe.4G254900 Prunus persica HOM05D006404 ORTHO05D008170 0.0e+00 1232.6 817 70.6
Actinidia06923 Actinidia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1229.2 863 68.6
PGR102G1713 Punica granatum HOM05D006404 ORTHO05D008170 0.0e+00 1221.8 941 62.5
CANSAT54G0859 Cannabis sativa HOM05D006404 ORTHO05D008170 0.0e+00 1219.1 879 66.2
CsaV3_1G042990 Cucumis sativus L. HOM05D006404 ORTHO05D008170 0.0e+00 1207.6 946 61.0
Glyma.12G020900 Glycine max HOM05D006404 ORTHO05D008170 0.0e+00 1206.8 948 62.1
ClCG03G013070 Citrullus lanatus HOM05D006404 ORTHO05D008170 0.0e+00 1204.9 951 61.4
MELO3C015171.2 Cucumis melo HOM05D006404 ORTHO05D008170 0.0e+00 1201.8 953 60.5
MSTRG.12459 Avicennia marina HOM05D006404 ORTHO05D008170 0.0e+00 1194.9 948 61.0
VMungo1127G0106 Vigna mungo HOM05D006404 ORTHO05D008170 0.0e+00 1178.3 948 60.1
CAN.G494.3 Capsicum annuum HOM05D006404 ORTHO05D008170 0.0e+00 1169.5 948 59.5
Nitab4.5_0007711g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 0.0e+00 1167.5 949 59.9
Lj3g0019929 Lotus japonicus HOM05D006404 ORTHO05D008170 0.0e+00 1166.4 953 60.5
Glyma.01G227500 Glycine max HOM05D006404 ORTHO05D008170 0.0e+00 1161.0 950 60.0
Oeu061307.1 Olea europaea HOM05D006404 ORTHO05D008170 0.0e+00 1158.7 860 64.3
Solyc11g065340.2 Solanum lycopersicum HOM05D006404 ORTHO05D008170 0.0e+00 1157.9 946 58.4
Atru.chr3.2649 Acer truncatum HOM05D006404 ORTHO05D008170 0.0e+00 1156.7 711 75.5
Sed0002434 Sechium edule HOM05D006404 ORTHO05D008170 0.0e+00 1156.4 948 59.6
Aqoxy2G00213 Aquilegia oxysepala HOM05D006404 ORTHO05D008170 0.0e+00 1154.4 945 58.6
Actinidia16347 Actinidia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1152.5 793 68.9
Psat7g172680 Pisum sativum HOM05D006404 ORTHO05D008170 0.0e+00 1142.9 953 59.5
Sopen11g025080 Solanum pennellii HOM05D006404 ORTHO05D008170 0.0e+00 1137.5 944 58.2
VMungo1215G1207 Vigna mungo HOM05D006404 ORTHO05D008170 0.0e+00 1129.0 922 59.2
Medtr4g076810 Medicago truncatula HOM05D006404 ORTHO05D008170 0.0e+00 1125.2 953 58.9
vmacro04128 Vaccinium macrocarpon HOM05D006404 ORTHO05D008170 0.0e+00 1119.4 924 60.7
Peaxi162Scf00004g03311 Petunia axillaris HOM05D006404 ORTHO05D008170 0.0e+00 1116.3 947 57.6
Lalb_Chr03g0024521 Lupinus albus HOM05D006404 ORTHO05D008170 0.0e+00 1115.1 954 58.4
Hund07470 Selenicereus undatus HOM05D006404 ORTHO05D008170 0.0e+00 1114.8 946 56.9
THA.LOC104811179 Tarenaya hassleriana HOM05D006404 ORTHO05D008170 0.0e+00 1114.0 941 58.6
Nitab4.5_0006123g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 0.0e+00 1113.2 922 59.0
Sc16g0011280 Simmondsia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1112.4 904 59.7
TPR.G13759 Trifolium pratense HOM05D006404 ORTHO05D008170 0.0e+00 1112.4 955 59.4
CiPaw.13G154900 Carya illinoinensis HOM05D006404 ORTHO05D008170 0.0e+00 1110.9 745 69.1
Migut.N02343 Erythranthe guttata HOM05D006404 ORTHO05D008170 0.0e+00 1083.2 942 56.4
AUR62000151 Chenopodium quinoa HOM05D006404 ORTHO05D008170 2.4e-309 1065.4 909 57.3
HanXRQChr13g0401241 Helianthus annuus HOM05D006404 ORTHO05D008170 7.0e-309 1063.9 920 55.7
DCAR_029968 Daucus carota HOM05D006404 ORTHO05D008170 9.2e-309 1063.5 920 56.6
arahy.Tifrunner.gnm1.ann1.BK260Y Arachis hypogaea HOM05D006404 ORTHO05D008170 2.0e-308 1062.4 949 56.5
PGSC0003DMG400029994 Solanum tuberosum HOM05D006404 ORTHO05D008170 2.7e-308 1062.0 880 58.9
arahy.Tifrunner.gnm1.ann1.E0EAPG Arachis hypogaea HOM05D006404 ORTHO05D008170 1.3e-307 1059.7 949 56.1
Gohir.A05G070000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.7e-307 1059.3 756 66.0
AUR62039864 Chenopodium quinoa HOM05D006404 ORTHO05D008170 2.3e-304 1048.9 949 55.4
Ca_26059_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 2.6e-303 1045.4 819 61.2
Ca_30127_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 2.6e-303 1045.4 819 61.2
Zm00001eb332810 Zea mays HOM05D006404 ORTHO05D008170 8.6e-299 1030.4 947 52.7
SGA_v2.0_scaffold3G01478 Striga asiatica HOM05D006404 ORTHO05D008170 3.3e-290 1001.9 923 54.8
Lj2A624G32 Lonicera japonica HOM05D006404 ORTHO05D008170 5.6e-290 1001.1 949 54.4
MBI19_g45588_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 2.1e-289 999.2 844 58.8
ATR0307G124 Amborella trichopoda HOM05D006404 ORTHO05D008170 2.9e-286 988.8 978 51.5
Glyma.11G094500 Glycine max HOM05D006404 ORTHO05D008170 3.8e-286 988.4 721 64.6
ECA233G0536 Erigeron canadensis HOM05D006404 ORTHO05D008170 1.1e-285 986.9 816 58.6
Duzib168G1842 Durio zibethinus HOM05D006404 ORTHO05D008170 2.4e-285 985.7 635 72.0
Manes.14G004336 Manihot esculenta HOM05D006404 ORTHO05D008170 8.7e-283 977.2 945 55.8
Lsat_1_v5_gn_6_25840 Lactuca sativa HOM05D006404 ORTHO05D008170 1.6e-281 973.0 913 54.0
Ah.06g193910 Amaranthus hybridus HOM05D006404 ORTHO05D008170 3.4e-279 965.3 906 52.4
Cpa.g.sc84.27 Carica papaya HOM05D006404 ORTHO05D008170 1.7e-275 953.0 816 58.5
SEGI_17812 Sequoiadendron giganteum HOM05D006404 ORTHO05D008170 1.8e-267 926.4 950 49.4
EL10Ac4g10212 Beta vulgaris HOM05D006404 ORTHO05D008170 1.3e-262 910.2 945 49.8
Gohir.A09G112300 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.1e-261 907.1 627 68.7
Phvul.002G034601 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 7.7e-215 751.5 648 56.0
CSS0019486 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 1.5e-213 747.3 489 69.3
Mapoly0128s0014 Marchantia polymorpha HOM05D006404 ORTHO05D008170 2.8e-196 689.9 977 38.7
Gohir.D05G073000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 6.6e-190 668.7 439 69.7
Os01g0275900 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 2.0e-186 657.1 582 52.9
Phvul.011G076700 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 1.0e-182 644.8 573 56.7
Gohir.D05G072932 Gossypium hirsutum HOM05D006404 ORTHO05D008170 3.2e-176 623.2 472 64.6
HPP92_028181 Vanilla planifolia HOM05D006404 ORTHO05D008170 4.2e-160 569.7 534 52.1
unitig_27.g25000 Utricularia gibba HOM05D006404 ORTHO05D008170 3.8e-153 546.6 516 53.5
FAN25G0856 Fragaria x ananassa HOM05D006404 ORTHO05D008170 2.5e-149 533.9 407 66.1
CBR_g12234 Chara braunii HOM05D006404 ORTHO05D008170 1.1e-128 465.3 1024 31.3
Glyma.11G015367 Glycine max HOM05D006404 ORTHO05D008170 1.9e-128 464.5 379 59.9
HPP92_028182 Vanilla planifolia HOM05D006404 ORTHO05D008170 4.7e-103 380.2 308 57.8
Gohir.A09G112350 Gossypium hirsutum HOM05D006404 ORTHO05D008170 8.6e-89 332.8 300 59.7
Duzib168G1560 Durio zibethinus HOM05D006404 ORTHO05D008170 1.5e-85 322.0 256 63.3
TAR633G2510 Trochodendron aralioides HOM05D006404 ORTHO05D008170 6.0e-74 283.5 280 55.0
PGSC0003DMG400035426 Solanum tuberosum HOM05D006404 ORTHO05D008170 5.0e-73 280.4 206 63.1
Os01g0275950 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 1.1e-72 279.3 286 49.7
unitig_27.g24999 Utricularia gibba HOM05D006404 ORTHO05D008170 8.4e-60 236.5 316 38.6
MBI19_g48146_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 2.9e-52 211.5 269 44.6
Atru.chr3.2650 Acer truncatum HOM05D006404 ORTHO05D008170 4.2e-35 154.5 105 70.5
Lsat_1_v5_gn_5_69941 Lactuca sativa HOM05D006404 ORTHO05D008170 1.8e-33 149.1 158 53.2
Lsat_1_v5_gn_4_119980 Lactuca sativa HOM05D006404 ORTHO05D008170 3.9e-33 147.9 134 56.0
Lsat_1_v5_gn_8_47480 Lactuca sativa HOM05D006404 ORTHO05D008170 5.1e-33 147.5 158 51.3
PGSC0003DMG400025695 Solanum tuberosum HOM05D006404 ORTHO05D008170 1.3e-31 142.9 109 57.8
PRCOL_00003209 Prasinoderma coloniale HOM05D006404 ORTHO05D008170 8.4e-28 130.2 811 22.9
HPP92_012439 Vanilla planifolia HOM05D006404 ORTHO05D008170 9.3e-27 126.7 223 34.5
Atru.chr3.2651 Acer truncatum HOM05D006404 ORTHO05D008170 3.1e-22 111.7 116 50.0
Thecc.01G390500 Theobroma cacao HOM05D006404 ORTHO05D008170 7.6e-21 107.1 95 55.8
MELO3C030880.2 Cucumis melo HOM05D006404 ORTHO05D008170 5.1e-17 94.4 86 54.7
TAR623G1438 Trochodendron aralioides HOM05D006201 ORTHO05D007178 1.3e-15 89.7 85 58.8
MELO3C034469.2 Cucumis melo HOM05D006404 ORTHO05D003726 1.8e-14 85.9 61 60.7
COL.COLO4_24475 Corchorus olitorius HOM05D003120 ORTHO05D003568 2.6e-13 82.0 66 59.1
MELO3C034790.2 Cucumis melo HOM05D006404 ORTHO05D008170 8.5e-12 77.0 50 68.0
MELO3C028471.2 Cucumis melo HOM05D006404 ORTHO05D008170 1.0e-09 70.1 53 60.4


User provided reference genes

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