Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 5.5e-248 860.5 436 100.0
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 2.1e-215 752.3 390 97.9
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 3.1e-211 738.4 428 85.3
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 2.6e-205 718.8 427 84.1
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 5.7e-205 717.6 427 84.1
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 8.3e-204 713.8 410 85.9
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 3.5e-202 708.4 421 83.6
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 3.3e-200 701.8 428 80.6
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 3.3e-200 701.8 420 83.1
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 1.2e-199 699.9 427 81.7
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 1.0e-198 696.8 427 81.3
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 2.0e-197 692.6 423 80.9
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 8.3e-196 687.2 400 84.0
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 3.1e-195 685.3 429 80.0
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 5.4e-195 684.5 431 79.6
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 7.0e-195 684.1 402 83.6
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 9.2e-195 683.7 400 83.0
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 2.0e-194 682.6 423 79.7
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 1.3e-193 679.9 428 78.7
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 4.3e-192 674.9 410 82.7
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 9.5e-192 673.7 412 80.3
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 9.5e-192 673.7 442 78.1
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 1.2e-191 673.3 402 82.3
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 2.8e-191 672.2 405 81.2
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 4.7e-191 671.4 400 81.5
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 3.1e-190 668.7 395 82.8
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 2.0e-189 666.0 437 77.3
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 2.9e-188 662.1 400 80.0
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 6.4e-188 661.0 401 80.8
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 6.4e-188 661.0 400 80.8
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 6.4e-188 661.0 398 79.9
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 1.1e-187 660.2 407 79.1
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 1.1e-187 660.2 400 80.2
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 1.1e-187 660.2 429 76.0
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.9e-187 659.4 407 79.1
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 7.0e-187 657.5 424 77.4
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 7.0e-187 657.5 407 78.9
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 9.2e-187 657.1 407 78.9
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 3.5e-186 655.2 432 75.5
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 4.6e-186 654.8 392 80.4
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 1.7e-185 652.9 400 79.5
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 5.0e-185 651.4 403 78.2
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 1.1e-184 650.2 427 75.4
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 1.1e-184 650.2 421 75.3
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 3.3e-184 648.7 407 77.6
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 3.3e-184 648.7 420 75.7
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 5.6e-184 647.9 466 71.5
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.2e-183 646.7 409 77.8
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 2.8e-183 645.6 448 73.4
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 4.7e-183 644.8 392 80.6
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 4.7e-183 644.8 400 77.5
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 8.0e-183 644.0 429 73.2
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 1.8e-182 642.9 400 79.0
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 2.3e-182 642.5 422 77.0
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 4.0e-182 641.7 431 73.5
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 4.0e-182 641.7 398 77.4
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 5.2e-182 641.3 398 78.6
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 1.5e-181 639.8 431 72.9
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 1.5e-181 639.8 429 73.0
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 2.6e-181 639.0 429 73.0
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 3.4e-181 638.6 431 73.1
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 1.3e-180 636.7 402 77.4
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 2.9e-180 635.6 422 76.3
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 1.9e-179 632.9 400 76.2
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 7.0e-179 630.9 429 73.0
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 1.2e-178 630.2 439 71.5
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 2.1e-178 629.4 432 72.2
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 6.0e-178 627.9 397 75.3
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 3.0e-177 625.5 421 73.2
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 3.0e-177 625.5 377 81.4
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 3.9e-177 625.2 400 75.2
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 6.2e-175 617.8 415 73.3
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 4.0e-174 615.1 421 73.2
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 5.2e-174 614.8 421 73.2
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 8.9e-174 614.0 381 78.7
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 2.0e-173 612.8 446 71.1
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 2.0e-173 612.8 400 75.0
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 2.0e-173 612.8 400 75.0
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 3.5e-170 602.1 581 58.9
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 6.0e-170 601.3 394 74.6
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 2.3e-169 599.4 402 74.1
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 8.6e-169 597.4 388 73.2
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 1.1e-168 597.0 395 73.7
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 2.5e-168 595.9 433 71.4
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 3.3e-168 595.5 427 69.1
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 1.6e-167 593.2 420 71.0
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.5e-165 586.6 391 74.9
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 9.9e-165 583.9 391 75.4
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 3.2e-163 578.9 424 66.7
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 2.1e-162 576.2 354 80.2
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 4.3e-160 568.5 331 83.4
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 6.4e-156 554.7 395 70.1
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 6.6e-153 544.7 376 73.9
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 1.3e-151 540.4 367 72.8
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 1.4e-150 537.0 402 67.9
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 2.4e-150 536.2 344 73.8
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 2.2e-148 529.6 312 84.6
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 1.1e-147 527.3 381 66.4
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 4.2e-147 525.4 409 63.1
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 3.5e-146 522.3 396 62.1
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 3.9e-145 518.8 338 73.7
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 1.4e-142 510.4 378 64.6
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 4.0e-134 482.3 400 62.5
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 1.5e-128 463.8 356 68.8
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 1.3e-127 460.7 318 72.6
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 8.2e-127 458.0 334 66.8
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 1.3e-119 434.1 377 56.0
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 2.0e-117 426.8 262 80.2
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 5.9e-117 425.2 281 76.2
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 2.2e-111 406.8 277 71.5
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 4.5e-109 399.1 348 62.4
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 1.0e-105 387.9 320 60.6
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 2.6e-101 373.2 233 78.1
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 1.2e-98 364.4 408 47.5
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 3.7e-95 352.8 381 49.1
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 4.4e-88 329.3 398 44.5
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.2e-69 268.1 259 53.3
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 3.6e-66 256.5 170 68.2
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 3.4e-64 250.0 252 56.7
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.6e-58 231.1 147 78.2
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 1.1e-57 228.4 129 82.9
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 2.9e-55 220.3 162 69.1
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 1.4e-54 218.0 122 85.2
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 8.9e-49 198.7 336 34.5
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 3.0e-44 183.7 167 55.1
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 9.0e-41 172.2 142 64.8
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 1.4e-30 138.3 112 65.2
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 1.0e-28 132.1 418 29.9
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 9.6e-27 125.6 84 67.9
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 2.1e-26 124.4 89 71.9
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 3.7e-26 123.6 95 68.4
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 1.8e-20 104.8 64 71.9
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 1.3e-15 88.6 68 61.8
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 7.2e-14 82.8 71 57.7
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 6.1e-13 79.7 49 71.4
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 9.7e-11 72.4 62 58.1
unitig_62.g23890 Utricularia gibba HOM05D005532 ORTHO05D006873 1.1e-09 68.9 42 76.2
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 6.9e-09 66.2 51 62.7
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 2.2e-07 61.2 44 59.1
ATR0721G059 Amborella trichopoda HOM05D005532 ORTHO05D006873 6.5e-07 59.7 47 59.6
AUR62000670 Chenopodium quinoa HOM05D001135 ORTHO05D001005 6.5e-07 59.7 48 62.5


User provided reference genes

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