Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G049700 Populus trichocarpa HOM05D006549 ORTHO05D008080 5.2e-202 707.6 379 100.0
Potri.001G254600 Populus trichocarpa HOM05D006549 ORTHO05D008080 5.4e-175 617.8 379 85.8
Sabra09G0036200 Salix brachista HOM05D006549 ORTHO05D008080 1.4e-170 603.2 435 76.8
Sabra16G0155200 Salix brachista HOM05D006549 ORTHO05D008080 6.2e-155 551.2 446 70.0
Manes.14G005500 Manihot esculenta HOM05D006549 ORTHO05D008080 1.1e-143 513.8 400 72.5
CiPaw.13G153800 Carya illinoinensis HOM05D006549 ORTHO05D008080 4.5e-129 465.3 377 68.2
GSVIVG01031548001 Vitis vinifera HOM05D006549 ORTHO05D008080 1.0e-125 454.1 397 64.5
Gohir.A09G111700 Gossypium hirsutum HOM05D006549 ORTHO05D008080 2.1e-123 446.4 385 65.7
Gohir.D09G108300 Gossypium hirsutum HOM05D006549 ORTHO05D008080 3.7e-123 445.7 392 66.1
Gorai.006G126000 Gossypium raimondii HOM05D006549 ORTHO05D008080 4.8e-123 445.3 392 66.6
Thecc.09G240800 Theobroma cacao HOM05D006549 ORTHO05D008080 3.1e-122 442.6 384 65.6
Duzib170G0947 Durio zibethinus HOM05D006549 ORTHO05D008080 9.9e-121 437.6 385 66.2
FvH4_3g28330 Fragaria vesca HOM05D006549 ORTHO05D008080 6.4e-120 434.9 392 60.5
Dinv22152 Davidia involucrata HOM05D006549 ORTHO05D008080 1.9e-119 433.3 381 64.8
Eucgr.B03712 Eucalyptus grandis HOM05D006549 ORTHO05D008080 1.9e-119 433.3 382 64.7
FAN11G3700 Fragaria x ananassa HOM05D006549 ORTHO05D008080 1.9e-119 433.3 392 60.5
TWI39G1226 Tripterygium wilfordii HOM05D006549 ORTHO05D008080 7.1e-119 431.4 384 64.8
MD11G1187800 Malus domestica HOM05D006549 ORTHO05D008080 2.1e-118 429.9 392 62.2
MD03G1170300 Malus domestica HOM05D006549 ORTHO05D008080 4.6e-118 428.7 405 62.7
CANSAT54G0570 Cannabis sativa HOM05D006549 ORTHO05D008080 3.9e-117 425.6 379 64.4
Ciclev10015584m.g Citrus clementina HOM05D006549 ORTHO05D008080 1.5e-116 423.7 391 62.9
Prupe.4G256800 Prunus persica HOM05D006549 ORTHO05D008080 1.5e-116 423.7 464 55.0
Haze_23190 Corylus avellana HOM05D006549 ORTHO05D008080 3.3e-116 422.5 444 57.9
Nn7g36445 Nelumbo nucifera HOM05D006549 ORTHO05D008080 4.8e-115 418.7 405 60.7
Actinidia06932 Actinidia chinensis HOM05D006549 ORTHO05D008080 1.1e-114 417.5 379 62.8
BraA03t09898Z Brassica rapa HOM05D006549 ORTHO05D008080 1.1e-114 417.5 367 63.2
ClCG03G013060 Citrullus lanatus HOM05D006549 ORTHO05D008080 1.8e-114 416.8 389 64.3
FAN21G3651 Fragaria x ananassa HOM05D006549 ORTHO05D008080 1.8e-114 416.8 402 57.7
PGR102G0709 Punica granatum HOM05D006549 ORTHO05D008080 1.8e-114 416.8 389 61.2
Actinidia16353 Actinidia chinensis HOM05D006549 ORTHO05D008080 9.0e-114 414.5 379 63.3
RcHm_v2.0_Chr5g0051211 Rosa chinensis HOM05D006549 ORTHO05D008080 1.7e-112 410.2 392 60.5
CsaV3_1G043000 Cucumis sativus L. HOM05D006549 ORTHO05D008080 2.2e-112 409.8 395 61.8
Glyma.11G015900 Glycine max HOM05D006549 ORTHO05D008080 3.8e-112 409.1 389 59.9
THA.LOC104811185 Tarenaya hassleriana HOM05D006549 ORTHO05D008080 4.9e-112 408.7 383 62.7
arahy.Tifrunner.gnm1.ann1.2W4GIE Arachis hypogaea HOM05D006549 ORTHO05D008080 6.5e-112 408.3 371 62.8
Sc09g0000890 Simmondsia chinensis HOM05D006549 ORTHO05D008080 3.2e-111 406.0 393 58.8
BolC3t13156H Brassica oleracea HOM05D006549 ORTHO05D008080 4.2e-111 405.6 363 62.8
COL.COLO4_36476 Corchorus olitorius HOM05D006549 ORTHO05D008080 1.2e-110 404.1 387 62.5
Oeu025891.1 Olea europaea HOM05D006549 ORTHO05D008080 1.6e-110 403.7 392 57.9
C09p64480 Brassica napus HOM05D006549 ORTHO05D008080 2.1e-110 403.3 387 59.2
BolC9t59282H Brassica oleracea HOM05D006549 ORTHO05D008080 2.7e-110 402.9 366 60.7
CSS0047891 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 3.5e-110 402.5 363 63.4
CARHR200690 Cardamine hirsuta HOM05D006549 ORTHO05D008080 4.6e-110 402.1 369 61.2
Sed0027042 Sechium edule HOM05D006549 ORTHO05D008080 6.0e-110 401.7 401 60.3
QL01p018141 Quercus lobata HOM05D006549 ORTHO05D008080 7.9e-110 401.4 400 60.8
arahy.Tifrunner.gnm1.ann1.9560XR Arachis hypogaea HOM05D006549 ORTHO05D008080 1.8e-109 400.2 371 61.7
Atru.chr3.2633 Acer truncatum HOM05D006549 ORTHO05D008080 2.3e-109 399.8 371 59.6
Dinv36213 Davidia involucrata HOM05D006549 ORTHO05D008080 5.1e-109 398.7 382 60.7
VMungo1215G3210 Vigna mungo HOM05D006549 ORTHO05D008080 8.7e-109 397.9 381 62.5
Cc01_g06100 Coffea canephora HOM05D006549 ORTHO05D008080 1.1e-108 397.5 392 57.9
Glyma.01G226800 Glycine max HOM05D006549 ORTHO05D008080 1.5e-108 397.1 395 60.3
AL6G23210 Arabidopsis lyrata HOM05D006549 ORTHO05D008080 2.5e-108 396.4 367 62.4
Medtr5g009010 Medicago truncatula HOM05D006549 ORTHO05D008080 5.7e-108 395.2 384 58.3
Nitab4.5_0006878g0020 Nicotiana tabacum HOM05D006549 ORTHO05D008080 9.7e-108 394.4 395 56.2
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 1.3e-107 394.0 355 62.8
BraA10t44605Z Brassica rapa HOM05D006549 ORTHO05D008080 2.2e-107 393.3 366 59.3
AT5G12410 Arabidopsis thaliana HOM05D006549 ORTHO05D008080 2.8e-107 392.9 371 61.7
Aa31LG3G14820 Aethionema arabicum HOM05D006549 ORTHO05D008080 4.1e-106 389.0 375 60.0
Lsat_1_v5_gn_2_29261 Lactuca sativa HOM05D006549 ORTHO05D008080 5.3e-106 388.7 380 60.0
Phvul.002G033900 Phaseolus vulgaris HOM05D006549 ORTHO05D008080 1.2e-105 387.5 376 62.2
TPR.G38023 Trifolium pratense HOM05D006549 ORTHO05D008080 1.2e-105 387.5 385 60.0
AUR62000165 Chenopodium quinoa HOM05D006549 ORTHO05D008080 2.0e-105 386.7 376 55.9
ECA238G1745 Erigeron canadensis HOM05D006549 ORTHO05D008080 2.6e-105 386.3 363 60.1
vmacro04120 Vaccinium macrocarpon HOM05D006549 ORTHO05D008080 4.5e-105 385.6 351 62.4
Carub.0006s1091 Capsella rubella HOM05D006549 ORTHO05D008080 7.6e-105 384.8 370 60.3
HanXRQChr14g0433001 Helianthus annuus HOM05D006549 ORTHO05D008080 7.6e-105 384.8 368 60.1
AUR62039846 Chenopodium quinoa HOM05D006549 ORTHO05D008080 1.0e-104 384.4 379 57.5
Aqoxy1G00310 Aquilegia oxysepala HOM05D006549 ORTHO05D008080 1.3e-104 384.0 379 59.4
A10p25410 Brassica napus HOM05D006549 ORTHO05D008080 6.5e-104 381.7 368 57.9
Sp6g31230 Schrenkiella parvula HOM05D006549 ORTHO05D008080 6.5e-104 381.7 387 57.9
Lalb_Chr09g0320561 Lupinus albus HOM05D006549 ORTHO05D008080 8.5e-104 381.3 396 54.8
Migut.N02355 Erythranthe guttata HOM05D006549 ORTHO05D008080 1.9e-103 380.2 380 59.2
MSTRG.17620 Avicennia marina HOM05D006549 ORTHO05D008080 7.2e-103 378.3 386 58.8
Hund07453 Selenicereus undatus HOM05D006549 ORTHO05D008080 2.7e-102 376.3 372 58.9
Thhalv10013724m.g Eutrema salsugineum HOM05D006549 ORTHO05D008080 4.6e-102 375.6 401 55.1
EL10Ac4g10185 Beta vulgaris HOM05D006549 ORTHO05D008080 6.1e-102 375.2 381 57.0
Nitab4.5_0002726g0080 Nicotiana tabacum HOM05D006549 ORTHO05D008080 2.3e-101 373.2 395 53.9
DCAR_000660 Daucus carota HOM05D006549 ORTHO05D008080 5.1e-101 372.1 422 52.4
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 6.7e-101 371.7 357 60.2
Solyc11g065180.2 Solanum lycopersicum HOM05D006549 ORTHO05D008080 1.2e-97 360.9 385 55.3
PGSC0003DMG400031244 Solanum tuberosum HOM05D006549 ORTHO05D008080 2.0e-97 360.1 386 54.7
ATR0721G160 Amborella trichopoda HOM05D006549 ORTHO05D008080 3.4e-97 359.4 385 52.2
QL01p018092 Quercus lobata HOM05D006549 ORTHO05D008080 3.4e-97 359.4 336 63.7
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 4.5e-97 359.0 349 57.3
CAN.G633.4 Capsicum annuum HOM05D006549 ORTHO05D008080 1.7e-96 357.1 388 53.4
Sopen11g024900 Solanum pennellii HOM05D006549 ORTHO05D008080 6.5e-96 355.1 386 54.1
Os11g0568600 Oryza sativa ssp. japonica HOM05D006549 ORTHO05D008080 8.5e-96 354.8 372 53.0
Psat2g186960 Pisum sativum HOM05D000745 ORTHO05D000641 1.1e-95 354.4 366 59.3
LjContig00222g0000121 Lotus japonicus HOM05D006549 ORTHO05D008080 2.1e-94 350.1 466 48.7
Ca_24492_v3 Cicer arietinum L. HOM05D000745 ORTHO05D000641 2.7e-94 349.7 356 60.7
SGA_v2.0_scaffold42G16082 Striga asiatica HOM05D006549 ORTHO05D008080 2.7e-94 349.7 382 53.9
BcaB01g05403 Brassica carinata HOM05D006549 ORTHO05D008080 4.7e-94 349.0 412 50.7
PSO384G3463 Papaver somniferum HOM05D006549 ORTHO05D008080 1.4e-93 347.4 392 54.8
Peaxi162Scf00004g03918 Petunia axillaris HOM05D006549 ORTHO05D008080 2.0e-92 343.6 377 52.0
unitig_27.g25003 Utricularia gibba HOM05D006549 ORTHO05D008080 2.0e-92 343.6 381 52.2
Zm00001eb200070 Zea mays HOM05D006549 ORTHO05D008080 3.3e-92 342.8 390 52.8
CDE08G0181 Ceratophyllum demersum HOM05D006549 ORTHO05D008080 9.7e-92 341.3 361 52.6
PSO339G6663 Papaver somniferum HOM05D006549 ORTHO05D008080 1.7e-91 340.5 392 54.6
MBI13_g04769_MAGBIO Magnolia biondii HOM05D006549 ORTHO05D008080 6.3e-91 338.6 391 51.9
Ah.06g193800 Amaranthus hybridus HOM05D006549 ORTHO05D008080 3.6e-86 322.8 383 52.2
Oeu061298.1 Olea europaea HOM05D006549 ORTHO05D008080 6.1e-86 322.0 621 37.7
Lju41A40T23 Lonicera japonica HOM05D006549 ORTHO05D008080 8.2e-83 311.6 328 56.1
SEGI_14205 Sequoiadendron giganteum HOM05D006549 ORTHO05D008080 6.7e-77 292.0 385 47.0
BcaB08g37001 Brassica carinata HOM05D006549 ORTHO05D008080 1.5e-76 290.8 362 50.0
FAN16G0297 Fragaria x ananassa HOM05D006549 ORTHO05D008080 1.0e-64 251.5 164 73.2
TAR633G0410 Trochodendron aralioides HOM05D006549 ORTHO05D008080 9.8e-60 235.0 141 80.1
SHI46597 Sapria himalayana HOM05D006549 ORTHO05D008080 1.3e-56 224.6 340 42.1
Hma1.2p1_1043F.1_g251200 Hydrangea macrophylla HOM05D006549 ORTHO05D008080 7.5e-52 208.8 135 71.1
Duzib168G0228 Durio zibethinus HOM05D006549 ORTHO05D008080 6.4e-51 205.7 288 49.7
Mapoly0091s0083 Marchantia polymorpha HOM05D006549 ORTHO05D008080 1.5e-47 194.5 402 35.3
AagrBONN_evm.TU.Sc2ySwM_228.1610 Anthoceros agrestis HOM05D006549 ORTHO05D008080 1.9e-47 194.1 372 34.4
SMO013G0006 Selaginella moellendorffii HOM05D006549 ORTHO05D008080 1.2e-46 191.4 362 35.4
Pp3c3_2270 Physcomitrium patens HOM05D006549 ORTHO05D008080 7.0e-42 175.6 367 34.9
Cc01_g06170 Coffea canephora HOM05D006549 ORTHO05D008080 1.5e-39 167.9 114 71.9
MELO3C015170.2 Cucumis melo HOM05D006549 ORTHO05D008080 1.9e-31 141.0 101 69.3
CBR_g300 Chara braunii HOM05D006549 ORTHO05D008080 4.0e-29 133.3 228 32.5
HPP92_011577 Vanilla planifolia HOM05D006549 ORTHO05D008080 1.6e-25 121.3 220 41.8
PRCOL_00001563 Prasinoderma coloniale HOM05D006549 ORTHO05D008080 3.9e-24 116.7 179 36.9
MELO3C029487.2 Cucumis melo HOM05D006549 ORTHO05D008080 6.2e-22 109.4 64 81.2
BolC3t13160H Brassica oleracea HOM05D006549 ORTHO05D008080 1.1e-21 108.6 78 64.1
Cpa.g.sc84.3 Carica papaya HOM05D006549 ORTHO05D008080 1.4e-21 108.2 58 89.7
MCO09G159 Micromonas commoda HOM05D006549 ORTHO05D008080 4.4e-20 103.2 213 31.0
Cre14.g629550 Chlamydomonas reinhardtii HOM05D006549 ORTHO05D008080 1.6e-17 94.7 170 34.1
Cpa.g.c41750 Carica papaya HOM05D006549 ORTHO05D008080 3.5e-17 93.6 77 57.1
CSS0036252 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 2.5e-15 87.4 59 72.9


User provided reference genes

Program Settings