Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 3.7e-235 817.8 402 100.0
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 4.9e-227 790.8 402 95.8
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 3.3e-223 778.1 402 93.5
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 4.3e-223 777.7 402 93.8
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 2.1e-222 775.4 402 93.0
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 4.8e-222 774.2 402 92.8
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 3.1e-221 771.5 402 93.3
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 4.0e-221 771.2 402 93.0
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 5.3e-221 770.8 402 92.3
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 5.3e-221 770.8 402 92.5
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 6.9e-221 770.4 402 92.8
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 9.0e-221 770.0 402 92.5
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 1.5e-220 769.2 402 92.0
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 2.6e-220 768.5 402 92.0
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 9.9e-220 766.5 402 92.0
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 1.3e-219 766.1 402 91.5
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 1.3e-219 766.1 401 91.3
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 1.1e-218 763.1 402 91.5
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 1.4e-218 762.7 402 92.3
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 7.1e-218 760.4 402 91.3
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 7.1e-218 760.4 402 90.8
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 7.1e-218 760.4 402 90.8
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 9.3e-218 760.0 402 90.5
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 9.3e-218 760.0 402 90.5
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 9.3e-218 760.0 402 91.0
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 2.1e-217 758.8 402 91.3
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 6.0e-217 757.3 402 90.5
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 7.9e-217 756.9 402 90.8
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 7.9e-217 756.9 402 91.3
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 1.7e-216 755.7 402 90.0
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 1.7e-216 755.7 402 90.5
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 2.3e-216 755.4 402 90.3
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 3.0e-216 755.0 402 89.8
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 3.9e-216 754.6 402 90.5
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 3.9e-216 754.6 402 90.3
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 5.1e-216 754.2 402 91.0
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 5.1e-216 754.2 402 89.8
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 6.6e-216 753.8 402 89.8
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 6.6e-216 753.8 402 89.6
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 6.6e-216 753.8 416 88.5
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 8.7e-216 753.4 402 90.3
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 8.7e-216 753.4 402 90.8
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 1.1e-215 753.1 402 90.8
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 1.1e-215 753.1 402 90.0
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.5e-215 752.7 402 90.5
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.9e-215 752.3 402 89.8
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 1.9e-215 752.3 416 88.2
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 3.3e-215 751.5 402 90.3
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 3.3e-215 751.5 402 90.0
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 3.3e-215 751.5 402 89.8
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 4.3e-215 751.1 402 90.3
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 4.3e-215 751.1 402 90.5
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 4.3e-215 751.1 402 90.5
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 7.4e-215 750.4 402 89.8
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 89.6
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 1.3e-214 749.6 402 89.8
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 1.3e-214 749.6 402 90.0
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 1.3e-214 749.6 402 90.0
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 2.8e-214 748.4 402 89.1
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 4.8e-214 747.7 402 89.8
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 6.2e-214 747.3 402 89.1
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 3.1e-213 745.0 402 89.6
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 6.9e-213 743.8 402 88.3
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 88.8
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 1.2e-212 743.0 402 89.6
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 2.6e-212 741.9 402 89.3
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 2.6e-212 741.9 402 89.3
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 3.4e-212 741.5 402 91.3
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 5.8e-212 740.7 402 88.8
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 9.9e-212 740.0 402 89.3
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 1.3e-211 739.6 402 88.3
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 2.2e-211 738.8 402 88.8
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 2.2e-211 738.8 402 88.8
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 2.2e-211 738.8 402 88.8
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 3.8e-211 738.0 411 87.3
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 4.9e-211 737.6 402 89.3
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 1.4e-210 736.1 402 88.6
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 1.4e-210 736.1 402 88.8
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 1.9e-210 735.7 402 87.6
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 3.2e-210 734.9 417 86.3
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 2.1e-209 732.3 402 86.6
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 1.8e-208 729.2 402 87.3
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 3.0e-208 728.4 402 87.8
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 3.0e-208 728.4 402 87.6
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 5.1e-208 727.6 402 87.3
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 5.1e-208 727.6 402 87.3
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 2.5e-207 725.3 402 85.6
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 3.3e-207 724.9 402 86.1
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 3.3e-207 724.9 396 87.6
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 4.3e-207 724.5 402 85.8
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 5.6e-207 724.2 402 85.3
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 1.3e-206 723.0 402 87.3
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 2.8e-206 721.8 402 85.6
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 3.7e-206 721.5 402 87.6
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 3.7e-206 721.5 438 81.7
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 3.7e-206 721.5 402 89.1
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 6.2e-206 720.7 429 82.5
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 8.1e-206 720.3 402 85.8
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 8.1e-206 720.3 441 80.3
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 1.8e-205 719.2 419 85.2
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 3.1e-205 718.4 402 85.8
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 3.1e-205 718.4 402 85.8
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 3.1e-205 718.4 402 85.8
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 4.0e-205 718.0 402 85.6
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 4.0e-205 718.0 402 85.6
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 6.9e-205 717.2 402 86.1
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 1.2e-204 716.5 402 85.6
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 1.2e-204 716.5 402 85.6
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 2.0e-204 715.7 402 85.6
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 2.0e-204 715.7 402 85.6
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 2.0e-204 715.7 402 85.6
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 2.6e-204 715.3 402 84.1
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 4.5e-204 714.5 402 85.3
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 4.5e-204 714.5 402 85.3
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 1.7e-203 712.6 401 85.5
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 2.9e-203 711.8 402 84.8
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 2.9e-203 711.8 402 84.1
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 2.5e-202 708.8 400 84.2
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 1.8e-200 702.6 402 83.6
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 1.1e-199 699.9 402 84.1
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 4.2e-194 681.4 402 82.6
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 4.2e-194 681.4 375 86.9
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 1.3e-190 669.8 402 80.8
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 1.8e-189 666.0 402 79.9
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 4.1e-189 664.8 361 90.3
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 9.0e-189 663.7 357 87.7
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 9.0e-189 663.7 402 79.1
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 1.2e-185 653.3 360 86.7
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 6.3e-182 641.0 402 79.1
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 6.1e-177 624.4 334 90.7
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 2.0e-175 619.4 340 87.9
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 2.6e-175 619.0 401 72.3
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 4.4e-175 618.2 402 72.1
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 5.3e-173 611.3 402 71.6
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 7.7e-172 607.4 402 76.6
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 6.5e-171 604.4 402 71.1
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.1e-167 593.6 403 69.0
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.5e-167 593.2 403 68.7
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 2.7e-161 572.4 402 69.4
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 5.7e-159 564.7 401 65.8
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 8.5e-155 550.8 403 65.5
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 2.2e-150 536.2 289 88.6
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 4.3e-146 521.9 403 68.7
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 7.5e-143 511.1 419 64.4
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 3.6e-137 492.3 402 64.9
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 2.3e-128 463.0 259 85.3
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 5.2e-120 435.3 397 54.2
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 1.9e-114 416.8 295 72.2
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 5.6e-114 415.2 395 53.4
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 4.8e-105 385.6 229 82.1
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 1.9e-101 373.6 219 84.0
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 9.3e-101 371.3 219 83.1
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 2.1e-100 370.2 219 82.2
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 8.2e-81 305.1 300 53.3
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 1.7e-78 297.4 160 86.9
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 5.0e-78 295.8 163 85.9
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 1.6e-55 221.1 116 92.2
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 7.5e-34 149.1 86 83.7
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 9.2e-32 142.1 350 28.3
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 5.0e-30 136.3 351 28.8
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 3.7e-17 93.6 47 89.4
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 3.0e-14 84.0 45 77.8
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 1.5e-13 81.6 72 59.7
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 3.1e-11 73.9 316 23.1


User provided reference genes

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