Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G046000 Populus trichocarpa HOM05D005807 ORTHO05D007121 7.9e-45 183.3 89 100.0
Potri.001G251204 Populus trichocarpa HOM05D005807 ORTHO05D007121 5.9e-24 114.0 62 82.3
Duzib168G1045 Durio zibethinus HOM05D005807 ORTHO05D007121 8.5e-23 110.2 62 79.0
Manes.01G161700 Manihot esculenta HOM05D005807 ORTHO05D007121 8.5e-23 110.2 62 79.0
arahy.Tifrunner.gnm1.ann1.B02C3Y Arachis hypogaea HOM05D005807 ORTHO05D007121 1.5e-22 109.4 62 79.0
Gohir.A13G224500 Gossypium hirsutum HOM05D005807 ORTHO05D007121 2.5e-22 108.6 62 79.0
Gohir.D13G229500 Gossypium hirsutum HOM05D005807 ORTHO05D007121 2.5e-22 108.6 62 79.0
CiPaw.13G077700 Carya illinoinensis HOM05D005807 ORTHO05D007121 3.2e-22 108.2 62 77.4
arahy.Tifrunner.gnm1.ann1.8F6K17 Arachis hypogaea HOM05D005807 ORTHO05D007121 5.5e-22 107.5 62 77.4
ClCG03G000770 Citrullus lanatus HOM05D005807 ORTHO05D007121 5.5e-22 107.5 62 77.4
Duzib150G0199 Durio zibethinus HOM05D005807 ORTHO05D007121 5.5e-22 107.5 62 77.4
Gorai.013G260200 Gossypium raimondii HOM05D005807 ORTHO05D007121 7.2e-22 107.1 62 77.4
VMungo0540G1230 Vigna mungo HOM05D005807 ORTHO05D007121 7.2e-22 107.1 62 75.8
Ciclev10029472m.g Citrus clementina HOM05D005807 ORTHO05D007121 9.4e-22 106.7 62 75.8
Manes.02G119500 Manihot esculenta HOM05D005807 ORTHO05D007121 9.4e-22 106.7 62 75.8
Sabra16G0152900 Salix brachista HOM05D005807 ORTHO05D007121 9.4e-22 106.7 68 75.0
Phvul.006G068000 Phaseolus vulgaris HOM05D005807 ORTHO05D007121 1.2e-21 106.3 62 75.8
QL01p038261 Quercus lobata HOM05D005807 ORTHO05D007121 1.2e-21 106.3 62 77.4
PGR102G0477 Punica granatum HOM05D005807 ORTHO05D007121 1.6e-21 105.9 62 77.4
Glyma.18G063100 Glycine max HOM05D005807 ORTHO05D007121 2.1e-21 105.5 62 77.4
Lalb_Chr18g0050921 Lupinus albus HOM05D005807 ORTHO05D007121 2.1e-21 105.5 62 75.8
Thecc.09G301900 Theobroma cacao HOM05D005807 ORTHO05D007121 2.1e-21 105.5 62 74.2
Atru.chr3.4221 Acer truncatum HOM05D005807 ORTHO05D007121 2.7e-21 105.1 62 75.8
Sed0012142 Sechium edule HOM05D005807 ORTHO05D007121 2.7e-21 105.1 62 75.8
MELO3C020551.2 Cucumis melo HOM05D005807 ORTHO05D007121 3.6e-21 104.8 62 75.8
Glyma.11G175500 Glycine max HOM05D005807 ORTHO05D007121 3.6e-21 104.8 62 77.4
CsaV3_1G036170 Cucumis sativus L. HOM05D005807 ORTHO05D007121 4.7e-21 104.4 62 75.8
Lj5g0019578 Lotus japonicus HOM05D005807 ORTHO05D007121 4.7e-21 104.4 71 69.0
Cfa011694 Carpinus fangiana HOM05D005807 ORTHO05D007121 8.0e-21 103.6 62 71.0
Haze_24321 Corylus avellana HOM05D005807 ORTHO05D007121 8.0e-21 103.6 62 71.0
MD11G1074800 Malus domestica HOM05D005807 ORTHO05D007121 8.0e-21 103.6 62 75.8
CANSAT25G1325 Cannabis sativa HOM05D005807 ORTHO05D007121 1.0e-20 103.2 62 72.6
CiPaw.14G059700 Carya illinoinensis HOM05D005807 ORTHO05D007121 1.0e-20 103.2 62 75.8
BcaC04g19835 Brassica carinata HOM05D005807 ORTHO05D007121 5.2e-20 100.9 62 72.6
C09p50820 Brassica napus HOM05D005807 ORTHO05D007121 5.2e-20 100.9 62 72.6
BolC9t57942H Brassica oleracea HOM05D005807 ORTHO05D007121 5.2e-20 100.9 62 72.6
Cpa.g.sc62.98 Carica papaya HOM05D005807 ORTHO05D007121 5.2e-20 100.9 62 72.6
Psat5g159160 Pisum sativum HOM05D005807 ORTHO05D007121 5.2e-20 100.9 62 74.2
Ah.15g099940 Amaranthus hybridus HOM05D005807 ORTHO05D007121 6.8e-20 100.5 62 72.6
A10p15530 Brassica napus HOM05D005807 ORTHO05D007121 6.8e-20 100.5 62 72.6
BraA10t43680Z Brassica rapa HOM05D005807 ORTHO05D007121 6.8e-20 100.5 62 72.6
Prupe.6G057600 Prunus persica HOM05D005807 ORTHO05D007121 8.8e-20 100.1 62 74.2
Eucgr.B02255 Eucalyptus grandis HOM05D005807 ORTHO05D007121 1.2e-19 99.8 62 74.2
CARHR272650 Cardamine hirsuta HOM05D005807 ORTHO05D007121 1.5e-19 99.4 62 69.4
FvH4_3g38540 Fragaria vesca HOM05D005807 ORTHO05D007121 1.5e-19 99.4 62 71.0
FAN11G3045 Fragaria x ananassa HOM05D005807 ORTHO05D007121 1.5e-19 99.4 62 71.0
FAN21G1466 Fragaria x ananassa HOM05D005807 ORTHO05D007121 2.0e-19 99.0 62 69.4
Sp6g20430 Schrenkiella parvula HOM05D005807 ORTHO05D007121 2.6e-19 98.6 62 71.0
TAR636G1782 Trochodendron aralioides HOM05D005807 ORTHO05D007121 2.6e-19 98.6 62 74.2
Aa31LG11G500 Aethionema arabicum HOM05D005807 ORTHO05D007121 3.4e-19 98.2 62 69.4
AT5G58740 Arabidopsis thaliana HOM05D005807 ORTHO05D007121 3.4e-19 98.2 62 69.4
DCAR_013059 Daucus carota HOM05D000043 ORTHO05D000223 3.4e-19 98.2 62 72.6
Thhalv10014898m.g Eutrema salsugineum HOM05D005807 ORTHO05D007121 3.4e-19 98.2 62 69.4
Lj6g0006671 Lotus japonicus HOM05D005807 ORTHO05D007121 3.4e-19 98.2 71 66.2
TPR.G21179 Trifolium pratense HOM05D005807 ORTHO05D007121 3.4e-19 98.2 62 71.0
AL8G35020 Arabidopsis lyrata HOM05D005807 ORTHO05D007121 4.4e-19 97.8 62 69.4
TWI36G1710 Tripterygium wilfordii HOM05D005807 ORTHO05D007121 4.4e-19 97.8 62 71.0
BcaB01g04495 Brassica carinata HOM05D005807 ORTHO05D007121 5.7e-19 97.4 62 69.4
RcHm_v2.0_Chr5g0069441 Rosa chinensis HOM05D005807 ORTHO05D007121 7.5e-19 97.1 62 67.7
TWI31G0235 Tripterygium wilfordii HOM05D005807 ORTHO05D007121 7.5e-19 97.1 62 71.0
Actinidia13933 Actinidia chinensis HOM05D005807 ORTHO05D007121 9.8e-19 96.7 62 71.0
MSTRG.22154 Avicennia marina HOM05D005807 ORTHO05D007121 1.3e-18 96.3 62 69.4
Nn2g13704 Nelumbo nucifera HOM05D005807 ORTHO05D007121 1.3e-18 96.3 61 73.8
THA.LOC104810714 Tarenaya hassleriana HOM05D005807 ORTHO05D007121 1.3e-18 96.3 62 67.7
Actinidia29698 Actinidia chinensis HOM05D005807 ORTHO05D007121 1.7e-18 95.9 62 71.0
Hma1.2p1_0703F.1_g206510 Hydrangea macrophylla HOM05D005807 ORTHO05D007121 1.7e-18 95.9 62 71.0
Sopen06g033340 Solanum pennellii HOM05D005807 ORTHO05D007121 1.7e-18 95.9 62 71.0
GSVIVG01038735001 Vitis vinifera HOM05D005807 ORTHO05D007121 1.7e-18 95.9 62 69.4
MD03G1070800 Malus domestica HOM05D005807 ORTHO05D007121 2.2e-18 95.5 62 71.0
THA.LOC104814913 Tarenaya hassleriana HOM05D005807 ORTHO05D007121 2.8e-18 95.1 62 67.7
Sed0002691 Sechium edule HOM05D005807 ORTHO05D007121 3.7e-18 94.7 58 72.4
Peaxi162Scf00540g00427 Petunia axillaris HOM05D005807 ORTHO05D007121 4.8e-18 94.4 62 69.4
PSO339G6415 Papaver somniferum HOM05D005807 ORTHO05D007121 6.3e-18 94.0 62 69.4
SEGI_25973 Sequoiadendron giganteum HOM05D005807 ORTHO05D007121 6.3e-18 94.0 62 69.4
Aqoxy168s004 Aquilegia oxysepala HOM05D005807 ORTHO05D007121 1.1e-17 93.2 62 66.1
Aqoxy2G00908 Aquilegia oxysepala HOM05D005807 ORTHO05D007121 1.1e-17 93.2 62 66.1
CDE06G1535 Ceratophyllum demersum HOM05D005807 ORTHO05D007121 1.1e-17 93.2 62 66.1
CDE06G1924 Ceratophyllum demersum HOM05D005807 ORTHO05D007121 1.1e-17 93.2 62 66.1
Nitab4.5_0000010g0300 Nicotiana tabacum HOM05D005807 ORTHO05D007121 1.1e-17 93.2 62 67.7
Nitab4.5_0008156g0020 Nicotiana tabacum HOM05D005807 ORTHO05D007121 1.1e-17 93.2 62 67.7
PSO801G0778 Papaver somniferum HOM05D005807 ORTHO05D007121 1.1e-17 93.2 62 69.4
Solyc06g076940.3 Solanum lycopersicum HOM05D005807 ORTHO05D007121 1.1e-17 93.2 62 67.7
vmacro10049 Vaccinium macrocarpon HOM05D005807 ORTHO05D007121 1.1e-17 93.2 62 67.7
CAN.G394.126 Capsicum annuum HOM05D005807 ORTHO05D007121 1.4e-17 92.8 62 69.4
Dinv34391 Davidia involucrata HOM05D005807 ORTHO05D007121 2.4e-17 92.0 62 69.4
Hund18849 Selenicereus undatus HOM05D005807 ORTHO05D007121 2.4e-17 92.0 62 64.5
HanXRQChr08g0221811 Helianthus annuus HOM05D005807 ORTHO05D007121 3.1e-17 91.7 62 67.7
SGA_v2.0_scaffold92G28310 Striga asiatica HOM05D005807 ORTHO05D007121 3.1e-17 91.7 68 61.8
Carub.0008s1936 Capsella rubella HOM05D005807 ORTHO05D007121 4.1e-17 91.3 62 64.5
AUR62001647 Chenopodium quinoa HOM05D005807 ORTHO05D007121 4.1e-17 91.3 62 66.1
Hma1.2p1_0703F.1_g206500 Hydrangea macrophylla HOM05D005807 ORTHO05D007121 4.1e-17 91.3 53 79.2
BcaB01g04639 Brassica carinata HOM05D005807 ORTHO05D007121 5.4e-17 90.9 62 67.7
MBI14_g11284_MAGBIO Magnolia biondii HOM05D005807 ORTHO05D007121 5.4e-17 90.9 62 69.4
MBI14_g43437_MAGBIO Magnolia biondii HOM05D005807 ORTHO05D007121 5.4e-17 90.9 62 69.4
Actinidia00945 Actinidia chinensis HOM05D000093 ORTHO05D000605 7.0e-17 90.5 58 70.7
AUR62020129 Chenopodium quinoa HOM05D005807 ORTHO05D007121 7.0e-17 90.5 62 66.1
PGSC0003DMG400030355 Solanum tuberosum HOM05D005807 ORTHO05D007121 7.0e-17 90.5 62 67.7
HanXRQChr07g0202931 Helianthus annuus HOM05D005807 ORTHO05D007121 1.2e-16 89.7 62 64.5
EL10Ac7g16166 Beta vulgaris HOM05D005807 ORTHO05D007121 1.6e-16 89.4 62 64.5
Migut.N02895 Erythranthe guttata HOM05D005807 ORTHO05D007121 1.6e-16 89.4 62 62.9
CSS0007250 Camellia sinensis var. sinensis HOM05D005807 ORTHO05D007121 2.0e-16 89.0 62 64.5
ATR0618G394 Amborella trichopoda HOM05D005807 ORTHO05D007121 2.7e-16 88.6 62 64.5
Cc05_g09980 Coffea canephora HOM05D005807 ORTHO05D007121 2.7e-16 88.6 62 67.7
Lsat_1_v5_gn_2_122940 Lactuca sativa HOM05D005807 ORTHO05D007121 4.5e-16 87.8 62 64.5
Oeu025375.1 Olea europaea HOM05D005807 ORTHO05D007121 4.5e-16 87.8 62 62.9
Sc12g0000690 Simmondsia chinensis HOM05D005807 ORTHO05D007121 7.7e-16 87.0 61 65.6
SalBow7G1665 Salvia bowleyana HOM05D005807 ORTHO05D007121 1.3e-15 86.3 62 61.3
ECA238G3051 Erigeron canadensis HOM05D005807 ORTHO05D007121 2.9e-15 85.1 62 64.5
HPP92_000412 Vanilla planifolia HOM05D005807 ORTHO05D007121 3.8e-15 84.7 62 62.9
Medtr3g463620 Medicago truncatula HOM05D005807 ORTHO05D007121 5.0e-15 84.3 90 50.0
Mapoly0037s0041 Marchantia polymorpha HOM05D005807 ORTHO05D007121 1.5e-14 82.8 62 58.1
Oeu010994.1 Olea europaea HOM05D005807 ORTHO05D007121 1.5e-14 82.8 62 62.9
unitig_8.g3606 Utricularia gibba HOM05D000298 ORTHO05D001646 1.5e-14 82.8 60 61.7
Os01g0668000 Oryza sativa ssp. japonica HOM05D005807 ORTHO05D007121 1.9e-14 82.4 62 59.7
Zm00001eb233440 Zea mays HOM05D005807 ORTHO05D007121 1.9e-14 82.4 62 59.7
SMO116G0032 Selaginella moellendorffii HOM05D005807 ORTHO05D007121 1.6e-13 79.3 62 53.2
Zm00001eb110600 Zea mays HOM05D005807 ORTHO05D007121 1.6e-13 79.3 53 67.9
SHI19135 Sapria himalayana HOM05D005807 ORTHO05D007121 6.1e-13 77.4 73 54.8
Pp3c16_190 Physcomitrium patens HOM05D005807 ORTHO05D007121 1.7e-10 69.3 61 50.8
Cre08.g369400 Chlamydomonas reinhardtii HOM05D005807 ORTHO05D007121 7.0e-09 63.9 62 41.9
vmacro12095 Vaccinium macrocarpon HOM05D002238 ORTHO05D001984 1.6e-08 62.8 49 53.1
MCO15G629 Micromonas commoda HOM05D005807 ORTHO05D007121 1.3e-07 59.7 62 40.3
Sabra09G0033100 Salix brachista HOM05D005807 ORTHO05D007121 2.9e-07 58.5 29 93.1
PRCOL_00004500 Prasinoderma coloniale HOM05D005807 ORTHO05D007121 3.3e-06 55.1 65 33.8


User provided reference genes

Program Settings