Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 3.5e-91 338.2 163 100.0
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 4.8e-88 327.8 163 95.1
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 4.3e-81 304.7 163 85.3
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 8.2e-80 300.4 163 84.7
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 1.1e-79 300.1 163 84.7
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 1.4e-79 299.7 163 86.5
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 4.0e-79 298.1 163 84.0
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 5.3e-79 297.7 163 84.0
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 5.8e-78 294.3 163 81.6
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 1.7e-77 292.7 163 82.8
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 4.9e-77 291.2 163 81.6
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 1.9e-76 289.3 162 81.5
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 5.5e-76 287.7 163 81.6
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 1.2e-75 286.6 163 80.4
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 3.5e-75 285.0 163 79.1
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 3.5e-75 285.0 163 79.1
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 6.1e-75 284.3 163 77.9
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 3.0e-74 282.0 163 79.1
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 6.7e-74 280.8 163 79.1
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 1.5e-73 279.6 163 76.7
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 2.5e-73 278.9 157 80.9
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 3.3e-73 278.5 163 79.1
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 5.7e-73 277.7 163 77.3
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 5.7e-73 277.7 159 79.2
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 1.3e-72 276.6 163 78.5
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 1.3e-72 276.6 163 80.4
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 2.2e-72 275.8 163 76.1
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 2.8e-72 275.4 163 77.3
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 2.8e-72 275.4 163 77.9
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 3.7e-72 275.0 162 79.0
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 3.7e-72 275.0 163 76.7
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 1.1e-71 273.5 151 82.1
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 1.1e-71 273.5 162 77.8
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 1.4e-71 273.1 163 75.5
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 1.4e-71 273.1 151 82.1
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 1.8e-71 272.7 163 75.5
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 3.1e-71 271.9 163 74.8
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 3.1e-71 271.9 163 77.9
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 4.1e-71 271.6 163 78.5
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 5.3e-71 271.2 148 83.8
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 6.9e-71 270.8 163 75.5
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 9.0e-71 270.4 163 74.8
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 9.0e-71 270.4 163 77.9
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 1.2e-70 270.0 163 77.9
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 2.0e-70 269.2 163 74.8
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 2.6e-70 268.9 163 73.6
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 2.6e-70 268.9 163 73.6
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 4.5e-70 268.1 163 75.5
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 4.5e-70 268.1 163 77.3
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 5.9e-70 267.7 163 73.0
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 5.9e-70 267.7 163 76.1
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 7.7e-70 267.3 163 77.3
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 1.3e-69 266.5 163 73.6
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 1.7e-69 266.2 163 73.6
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 1.7e-69 266.2 163 73.0
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 2.2e-69 265.8 163 76.1
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 5.0e-69 264.6 155 78.7
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 6.5e-69 264.2 163 73.0
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 8.5e-69 263.8 155 78.7
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 1.4e-68 263.1 163 75.5
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 1.9e-68 262.7 162 73.5
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 2.5e-68 262.3 154 78.6
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 2.5e-68 262.3 148 79.1
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 2.5e-68 262.3 154 77.9
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 7.2e-68 260.8 165 75.2
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 7.2e-68 260.8 165 75.2
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 9.4e-68 260.4 165 75.2
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 1.2e-67 260.0 165 75.2
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 2.7e-67 258.8 139 84.9
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 3.6e-67 258.5 163 75.5
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 2.3e-66 255.8 154 75.3
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 2.3e-66 255.8 147 80.3
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 2.3e-66 255.8 147 80.3
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 3.9e-66 255.0 153 73.9
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 3.9e-66 255.0 153 73.9
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 3.9e-66 255.0 165 73.9
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 1.1e-65 253.4 147 77.6
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 2.5e-65 252.3 163 73.6
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 7.4e-65 250.8 153 73.9
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 7.4e-65 250.8 163 68.1
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 1.3e-64 250.0 152 73.0
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 1.3e-64 250.0 165 70.9
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 2.8e-64 248.8 164 70.1
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 3.7e-64 248.4 146 75.3
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 4.8e-64 248.1 165 71.5
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 4.8e-64 248.1 157 71.3
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 8.2e-64 247.3 165 70.3
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 4.1e-63 245.0 152 73.7
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 9.1e-63 243.8 165 70.3
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 1.2e-62 243.4 141 76.6
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 2.6e-62 242.3 163 68.1
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 4.5e-62 241.5 152 71.1
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 5.9e-62 241.1 165 68.5
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.0e-61 240.4 165 68.5
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 1.0e-61 240.4 164 67.7
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 3.8e-61 238.4 147 72.8
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 6.5e-61 237.7 141 73.8
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 1.9e-60 236.1 142 75.4
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 1.9e-60 236.1 142 75.4
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 5.5e-60 234.6 165 66.7
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 1.2e-59 233.4 163 64.4
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 2.7e-59 232.3 136 75.7
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 4.7e-59 231.5 178 61.8
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 1.0e-58 230.3 146 71.2
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 1.4e-58 229.9 163 64.4
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.4e-58 229.9 136 73.5
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 2.3e-58 229.2 124 85.5
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 6.7e-58 227.6 136 75.7
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 2.0e-57 226.1 139 74.8
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 5.7e-57 224.6 162 64.2
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 1.3e-56 223.4 142 70.4
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 1.3e-56 223.4 160 65.0
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 9.1e-55 217.2 163 65.6
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 7.7e-54 214.2 146 65.1
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 6.5e-53 211.1 108 92.6
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 1.1e-52 210.3 163 63.2
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 4.8e-48 194.9 163 56.4
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 1.8e-47 193.0 163 56.4
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 7.7e-46 187.6 153 62.1
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 2.6e-41 172.6 123 65.9
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 7.5e-41 171.0 163 54.6
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.1e-39 167.2 124 63.7
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 9.1e-39 164.1 104 72.1
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 2.7e-38 162.5 123 59.3
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.0e-37 160.6 149 53.7
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 3.8e-37 158.7 164 50.0
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 5.0e-37 158.3 164 49.4
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 2.1e-35 152.9 176 50.0
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 3.6e-35 152.1 176 50.0
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 1.8e-34 149.8 123 56.9
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 5.7e-33 144.8 163 44.8
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 2.2e-32 142.9 165 45.5
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 8.3e-32 141.0 90 74.4
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 2.4e-31 139.4 164 43.9
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 5.9e-30 134.8 134 53.0
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 1.6e-27 126.7 140 46.4
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 8.3e-24 114.4 67 86.6
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 3.7e-16 89.0 63 61.9
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 6.6e-13 78.2 122 36.1
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 4.3e-12 75.5 53 66.0
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 1.2e-11 73.9 62 61.3
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.2e-09 67.4 58 56.9
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 1.5e-09 67.0 49 61.2
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 2.4e-07 59.7 43 67.4
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 2.1e-06 56.6 46 54.3


User provided reference genes

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