Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G040500 Populus trichocarpa HOM05D005457 ORTHO05D006350 0.0e+00 1890.5 1057 100.0
Sabra09G0028400 Salix brachista HOM05D005457 ORTHO05D006350 0.0e+00 1537.3 1004 82.4
Potri.001G247100 Populus trichocarpa HOM05D005457 ORTHO05D006350 0.0e+00 1224.9 1032 68.3
Manes.02G123500 Manihot esculenta HOM05D005457 ORTHO05D006350 2.9e-210 736.5 1032 48.8
Atru.chr3.4038 Acer truncatum HOM05D005457 ORTHO05D006350 2.2e-141 507.7 1089 38.9
Prupe.6G064800 Prunus persica HOM05D005457 ORTHO05D006350 3.7e-141 506.9 1104 39.7
Dinv34321 Davidia involucrata HOM05D005457 ORTHO05D006350 1.6e-136 491.5 1261 38.5
Ciclev10027683m.g Citrus clementina HOM05D005457 ORTHO05D006350 2.3e-135 487.6 1163 38.3
Haze_24232 Corylus avellana HOM05D005457 ORTHO05D006350 9.2e-132 475.7 1218 36.9
Gohir.D03G119500 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.1e-127 462.2 1046 37.9
Gorai.003G125700 Gossypium raimondii HOM05D005457 ORTHO05D006350 1.8e-127 461.5 1091 37.9
Gohir.D03G119400 Gossypium hirsutum HOM05D005457 ORTHO05D006350 5.2e-127 459.9 1033 38.4
Thecc.09G309000 Theobroma cacao HOM05D005457 ORTHO05D006350 6.8e-127 459.5 1144 38.8
Gorai.003G125900 Gossypium raimondii HOM05D005457 ORTHO05D006350 2.0e-126 458.0 1054 37.9
QL01p028955 Quercus lobata HOM05D005457 ORTHO05D006350 4.4e-118 430.3 1217 35.6
Gohir.A03G047600 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.2e-115 422.2 1078 37.1
SHI05894 Sapria himalayana HOM05D005457 ORTHO05D006350 5.1e-114 416.8 1102 36.0
FAN25G1264 Fragaria x ananassa HOM05D005457 ORTHO05D006350 9.9e-110 402.5 1070 37.1
CSS0035455 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 2.9e-109 401.0 1190 35.6
FvH4_3g37470 Fragaria vesca HOM05D005457 ORTHO05D006350 4.9e-109 400.2 1155 36.3
ClCG03G001030 Citrullus lanatus HOM05D005457 ORTHO05D006350 8.4e-109 399.4 1227 34.0
FAN21G0431 Fragaria x ananassa HOM05D005457 ORTHO05D006350 6.9e-103 379.8 1092 36.4
MD11G1084500 Malus domestica HOM05D005457 ORTHO05D006350 1.5e-102 378.6 1072 35.5
FAN11G1716 Fragaria x ananassa HOM05D005457 ORTHO05D006350 2.6e-102 377.9 1175 35.2
GSVIVG01024823001 Vitis vinifera HOM05D005457 ORTHO05D006350 2.9e-101 374.4 1276 33.3
MD03G1079900 Malus domestica HOM05D005457 ORTHO05D006350 4.2e-100 370.5 1102 33.8
MELO3C020581.2 Cucumis melo HOM05D005457 ORTHO05D006350 2.3e-98 364.8 1145 34.3
CsaV3_1G035890 Cucumis sativus L. HOM05D005457 ORTHO05D006350 5.1e-98 363.6 1142 34.7
Gohir.A03G047700 Gossypium hirsutum HOM05D005457 ORTHO05D006350 3.3e-97 360.9 1024 34.9
Rhsim13G0075000 Rhododendron simsii HOM05D005457 ORTHO05D006350 1.6e-96 358.6 1073 36.2
CiPaw.13G084000 Carya illinoinensis HOM05D005457 ORTHO05D006350 3.6e-96 357.5 1115 33.8
Hma1.2p1_0543F.1_g175290 Hydrangea macrophylla HOM05D005457 ORTHO05D006350 8.1e-96 356.3 1237 33.2
Dinv17076 Davidia involucrata HOM05D005457 ORTHO05D006350 9.0e-95 352.8 1275 34.3
Dinv43020 Davidia involucrata HOM05D005457 ORTHO05D006350 9.0e-95 352.8 1275 34.3
Dinv43077 Davidia involucrata HOM05D005457 ORTHO05D006350 9.0e-95 352.8 1275 34.3
Sed0019872 Sechium edule HOM05D005457 ORTHO05D006350 3.8e-93 347.4 1150 33.3
COL.COLO4_19073 Corchorus olitorius HOM05D005457 ORTHO05D006350 5.4e-92 343.6 906 37.9
FAN16G3594 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.3e-90 339.0 1112 32.6
TAR369G0749 Trochodendron aralioides HOM05D005457 ORTHO05D006350 5.1e-90 337.0 1291 32.6
Actinidia25123 Actinidia chinensis HOM05D005457 ORTHO05D006350 6.9e-79 300.1 1022 32.5
vmacro03007 Vaccinium macrocarpon HOM05D005457 ORTHO05D006350 6.9e-79 300.1 1069 34.8
RcHm_v2.0_Chr5g0067361 Rosa chinensis HOM05D005457 ORTHO05D006350 5.8e-78 297.0 420 46.0
arahy.Tifrunner.gnm1.ann1.L17SH6 Arachis hypogaea HOM05D005457 ORTHO05D006350 5.0e-77 293.9 1010 32.7
Glyma.12G007800 Glycine max HOM05D005457 ORTHO05D006350 6.7e-74 283.5 1090 32.6
Lj2A1073T53 Lonicera japonica HOM05D005457 ORTHO05D006350 4.8e-72 277.3 1142 31.3
Hund11609 Selenicereus undatus HOM05D005457 ORTHO05D006350 3.4e-70 271.2 1140 31.1
arahy.Tifrunner.gnm1.ann1.U9UY67 Arachis hypogaea HOM05D005457 ORTHO05D006350 5.9e-70 270.4 998 32.1
Phvul.011G009900 Phaseolus vulgaris HOM05D005457 ORTHO05D006350 5.9e-70 270.4 1117 32.0
EL10Ac7g16099 Beta vulgaris HOM05D005457 ORTHO05D006350 1.0e-69 269.6 1083 29.9
Manes.01G166000 Manihot esculenta HOM05D005457 ORTHO05D006350 1.7e-69 268.9 498 46.4
Eucgr.B02283 Eucalyptus grandis HOM05D005457 ORTHO05D006350 3.8e-69 267.7 1141 32.4
Nn2g11331 Nelumbo nucifera HOM05D005457 ORTHO05D006350 5.5e-68 263.8 1252 31.1
MBI14_g32923_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 7.2e-68 263.5 1220 30.4
CSS0006949 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 9.4e-68 263.1 1050 32.0
Sc12g0001060 Simmondsia chinensis HOM05D005457 ORTHO05D006350 3.0e-66 258.1 1145 30.5
Sopen09g014590 Solanum pennellii HOM05D005457 ORTHO05D006350 4.8e-64 250.8 1108 31.4
Solyc09g031650.3 Solanum lycopersicum HOM05D005457 ORTHO05D006350 6.3e-64 250.4 1108 31.1
TAR623G1322 Trochodendron aralioides HOM05D005457 ORTHO05D006350 5.3e-63 247.3 414 49.3
CAN.G1002.16 Capsicum annuum HOM05D005457 ORTHO05D006350 9.1e-63 246.5 1076 30.3
Peaxi162Scf00433g00116 Petunia axillaris HOM05D005457 ORTHO05D006350 7.7e-62 243.4 1091 29.7
AUR62001711 Chenopodium quinoa HOM05D005457 ORTHO05D006350 1.0e-61 243.0 873 30.6
VMungo1127G1417 Vigna mungo HOM05D005457 ORTHO05D006350 1.3e-61 242.7 1105 31.5
Lj3g0007084 Lotus japonicus HOM05D005457 ORTHO05D006350 9.4e-60 236.5 995 31.4
AUR62020069 Chenopodium quinoa HOM05D005457 ORTHO05D006350 2.1e-59 235.3 1038 28.1
Lj1C143T9 Lonicera japonica HOM05D005457 ORTHO05D006350 1.5e-57 229.2 1221 29.4
Nn2g13569 Nelumbo nucifera HOM05D005457 ORTHO05D006350 5.7e-57 227.3 1287 28.9
Glyma.09G228800 Glycine max HOM05D005457 ORTHO05D006350 4.1e-55 221.1 1104 30.9
Ca_19579_v3 Cicer arietinum L. HOM05D005457 ORTHO05D006350 9.1e-55 219.9 992 31.0
Cc00_g21960 Coffea canephora HOM05D005457 ORTHO05D006350 2.6e-54 218.4 1167 31.4
PGSC0003DMG400006701 Solanum tuberosum HOM05D005457 ORTHO05D006350 5.9e-54 217.2 1097 28.7
Ah.14g082630 Amaranthus hybridus HOM05D005457 ORTHO05D006350 2.2e-53 215.3 1049 29.4
TPR.G3642 Trifolium pratense HOM05D005457 ORTHO05D006350 4.7e-51 207.6 813 32.1
Psat7g154880 Pisum sativum HOM05D005457 ORTHO05D006350 1.4e-50 206.1 1061 30.0
Cpa.g.sc112.90 Carica papaya HOM05D005457 ORTHO05D006350 2.3e-50 205.3 651 33.2
Lalb_Chr01g0000381 Lupinus albus HOM05D005457 ORTHO05D006350 2.3e-50 205.3 1050 29.7
Aqoxy1G00759 Aquilegia oxysepala HOM05D005457 ORTHO05D006350 3.1e-47 194.9 1192 28.3
PSO782G3368 Papaver somniferum HOM05D005457 ORTHO05D006350 4.5e-46 191.0 979 27.0
ATR0618G328 Amborella trichopoda HOM05D005457 ORTHO05D006350 8.5e-45 186.8 596 33.1
Duzib170G0589 Durio zibethinus HOM05D005457 ORTHO05D006350 3.0e-42 178.3 317 38.5
ECA247G2917 Erigeron canadensis HOM05D005457 ORTHO05D006350 4.4e-41 174.5 1065 29.3
HanXRQChr08g0237081 Helianthus annuus HOM05D005457 ORTHO05D006350 5.7e-41 174.1 1055 28.1
Lsat_1_v5_gn_9_25441 Lactuca sativa HOM05D005457 ORTHO05D006350 5.7e-41 174.1 991 28.4
Medtr4g037575 Medicago truncatula HOM05D005457 ORTHO05D006350 1.1e-39 169.9 1061 29.1
Oeu017421.1 Olea europaea HOM05D005457 ORTHO05D006350 1.1e-39 169.9 327 34.9
PSO170G6745 Papaver somniferum HOM05D005457 ORTHO05D006350 7.0e-39 167.2 1021 26.0
Prupe.6G064700 Prunus persica HOM05D005457 ORTHO05D006350 1.1e-36 159.8 447 35.6
Actinidia08557 Actinidia chinensis HOM05D005457 ORTHO05D006350 1.9e-36 159.1 339 36.3
Cpa.g.sc112.91 Carica papaya HOM05D005457 ORTHO05D006350 1.5e-33 149.4 114 65.8
Cpa.g.sc112.89 Carica papaya HOM05D005457 ORTHO05D006350 7.0e-31 140.6 272 43.0
SalBow2G3533 Salvia bowleyana HOM05D005457 ORTHO05D006350 2.9e-29 135.2 1067 27.6
Migut.N00905 Erythranthe guttata HOM05D005457 ORTHO05D006350 2.5e-28 132.1 262 37.8
THA.LOC104799410 Tarenaya hassleriana HOM05D005457 ORTHO05D006350 2.1e-27 129.0 1020 27.6
CSS0049881 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 3.6e-27 128.3 706 28.3
Nitab4.5_0000752g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 1.7e-24 119.4 765 28.9
DCAR_027735 Daucus carota HOM05D005457 ORTHO05D006350 1.1e-23 116.7 1069 27.0
RcHm_v2.0_Chr5g0067371 Rosa chinensis HOM05D005457 ORTHO05D006350 4.1e-23 114.8 583 31.6
CDE09G0768 Ceratophyllum demersum HOM05D005457 ORTHO05D006350 8.6e-21 107.1 112 55.4
SGA_v2.0_scaffold199G41161 Striga asiatica HOM05D005457 ORTHO05D006350 2.1e-19 102.4 1087 26.4
TAR623G0390 Trochodendron aralioides HOM05D005457 ORTHO05D006350 2.3e-18 99.0 430 29.5
HPP92_001490 Vanilla planifolia HOM05D005457 ORTHO05D006350 3.4e-17 95.1 396 28.8
DCAR_027737 Daucus carota HOM05D005457 ORTHO05D006350 9.8e-17 93.6 248 31.5
DCAR_027739 Daucus carota HOM05D005457 ORTHO05D006350 3.7e-16 91.7 1016 24.8
CDE02G3816 Ceratophyllum demersum HOM05D034644 ORTHO05D006350 1.1e-15 90.1 843 25.4
Nitab4.5_0006476g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 1.2e-14 86.7 540 29.4
unitig_27.g24810 Utricularia gibba HOM05D005457 ORTHO05D006350 1.1e-12 80.1 305 28.9
Psat2g109120 Pisum sativum HOM05D005457 ORTHO05D006350 8.1e-11 73.9 238 27.7
Duzib170G0080 Durio zibethinus HOM05D005457 ORTHO05D006350 3.1e-10 72.0 338 30.5
Os12g0155300 Oryza sativa ssp. japonica HOM05D005457 ORTHO05D006350 5.4e-07 61.2 455 24.8
Zm00001eb358910 Zea mays HOM05D005457 ORTHO05D006350 7.1e-07 60.8 78 44.9
Zm00001eb159160 Zea mays HOM05D005457 ORTHO05D006350 6.0e-06 57.8 130 36.2


User provided reference genes

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