Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 1.7e-80 302.8 164 100.0
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 1.1e-71 273.5 164 85.4
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 5.9e-54 214.5 164 79.3
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 3.0e-50 202.2 162 71.6
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 2.5e-44 182.6 103 83.5
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 3.3e-44 182.2 107 80.4
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 7.3e-44 181.0 110 77.3
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 1.6e-43 179.9 153 58.2
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 2.1e-43 179.5 158 59.5
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 2.1e-43 179.5 156 57.7
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 2.8e-43 179.1 154 59.1
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 4.7e-43 178.3 156 59.0
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 4.7e-43 178.3 157 58.0
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 4.7e-43 178.3 158 59.5
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 8.0e-43 177.6 157 57.3
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 1.0e-42 177.2 117 71.8
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 1.0e-42 177.2 117 71.8
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 1.0e-42 177.2 152 58.6
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.4e-42 176.8 158 58.2
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 1.4e-42 176.8 158 58.9
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 6.8e-42 174.5 152 58.6
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 6.8e-42 174.5 97 79.4
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 8.9e-42 174.1 117 70.1
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 1.2e-41 173.7 117 69.2
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 1.2e-41 173.7 104 76.0
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 1.5e-41 173.3 117 70.9
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 1.5e-41 173.3 117 69.2
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.5e-41 173.3 89 83.1
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 1.5e-41 173.3 117 69.2
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 3.4e-41 172.2 163 57.1
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 5.8e-41 171.4 151 57.6
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 7.5e-41 171.0 161 55.3
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 9.8e-41 170.6 117 69.2
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 1.3e-40 170.2 104 75.0
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.3e-40 170.2 104 76.9
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 1.7e-40 169.9 145 57.9
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 2.2e-40 169.5 152 57.2
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 2.2e-40 169.5 103 73.8
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 2.9e-40 169.1 103 75.7
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 2.9e-40 169.1 107 69.2
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 4.9e-40 168.3 107 72.9
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 4.9e-40 168.3 103 72.8
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 6.4e-40 167.9 147 59.9
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 8.3e-40 167.5 89 82.0
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 1.4e-39 166.8 86 83.7
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 1.8e-39 166.4 152 56.6
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.4e-39 166.0 153 55.6
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 3.2e-39 165.6 102 71.6
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 3.2e-39 165.6 103 71.8
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 5.4e-39 164.9 156 57.7
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 5.4e-39 164.9 94 77.7
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 5.4e-39 164.9 156 54.5
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 7.0e-39 164.5 104 74.0
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 7.0e-39 164.5 103 72.8
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 7.0e-39 164.5 102 69.6
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 7.0e-39 164.5 81 86.4
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 9.2e-39 164.1 140 59.3
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 1.2e-38 163.7 102 74.5
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 1.2e-38 163.7 102 71.6
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 1.6e-38 163.3 81 87.7
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 1.6e-38 163.3 151 55.6
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 2.0e-38 162.9 96 77.1
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.0e-38 162.9 83 83.1
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 2.0e-38 162.9 132 59.1
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 2.7e-38 162.5 157 56.7
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 2.7e-38 162.5 82 85.4
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 2.7e-38 162.5 104 70.2
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 3.5e-38 162.2 102 73.5
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 4.6e-38 161.8 156 56.4
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 4.6e-38 161.8 108 72.2
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 4.6e-38 161.8 103 68.0
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 1.0e-37 160.6 104 70.2
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 1.3e-37 160.2 103 70.9
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 1.3e-37 160.2 95 74.7
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 1.7e-37 159.8 102 70.6
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 2.3e-37 159.5 108 71.3
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 3.0e-37 159.1 149 56.4
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 3.0e-37 159.1 99 72.7
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 3.0e-37 159.1 115 64.3
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 3.0e-37 159.1 103 68.9
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 5.0e-37 158.3 93 72.0
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 6.6e-37 157.9 103 70.9
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 6.6e-37 157.9 103 70.9
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 6.6e-37 157.9 103 70.9
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 6.6e-37 157.9 102 74.5
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 1.5e-36 156.8 83 83.1
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 1.5e-36 156.8 103 74.8
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 1.5e-36 156.8 160 55.0
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 1.9e-36 156.4 93 75.3
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 1.9e-36 156.4 108 65.7
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 1.9e-36 156.4 158 55.1
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 2.5e-36 156.0 90 80.0
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 3.3e-36 155.6 109 69.7
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 3.3e-36 155.6 152 55.9
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 5.6e-36 154.8 109 67.9
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 9.5e-36 154.1 103 71.8
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 9.5e-36 154.1 109 68.8
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 1.6e-35 153.3 80 78.8
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 2.1e-35 152.9 103 70.9
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 2.8e-35 152.5 91 73.6
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 2.8e-35 152.5 87 73.6
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 3.6e-35 152.1 159 52.2
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 1.8e-34 149.8 98 68.4
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 2.3e-34 149.4 100 67.0
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 2.3e-34 149.4 102 68.6
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 4.0e-34 148.7 86 73.3
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 1.2e-33 147.1 94 74.5
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 2.0e-33 146.4 170 49.4
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 7.5e-33 144.4 105 68.6
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 7.5e-33 144.4 105 68.6
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 7.5e-33 144.4 74 82.4
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 1.1e-31 140.6 160 50.0
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 1.7e-29 133.3 127 56.7
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 3.3e-28 129.0 107 58.9
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 4.3e-28 128.6 84 66.7
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 7.3e-28 127.9 68 80.9
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 9.5e-28 127.5 155 48.4
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 2.3e-26 122.9 115 53.0
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.4e-23 113.6 121 48.8
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 3.2e-23 112.5 54 87.0
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 7.1e-23 111.3 77 67.5
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 1.2e-22 110.5 226 32.7
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 1.2e-22 110.5 99 56.6
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 6.0e-22 108.2 52 84.6
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 7.8e-22 107.8 58 82.8
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 1.1e-20 104.0 51 80.4
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 1.6e-19 100.1 129 45.7
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 2.1e-19 99.8 77 54.5
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 2.4e-18 96.3 84 52.4
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 1.5e-17 93.6 77 55.8
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 2.0e-17 93.2 71 64.8
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 5.8e-17 91.7 81 59.3
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 5.8e-17 91.7 44 88.6
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 2.3e-13 79.7 71 59.2
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 5.1e-13 78.6 43 76.7
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 1.9e-12 76.6 85 44.7
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 1.4e-10 70.5 76 42.1
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 2.4e-10 69.7 49 61.2
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 5.2e-10 68.6 48 62.5
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 7.6e-09 64.7 41 63.4
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 1.7e-08 63.5 37 73.0
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 2.9e-08 62.8 49 55.1


User provided reference genes

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