Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 0.0e+00 1202.2 883 100.0
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 3.0e-229 799.3 886 74.3
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 1.4e-218 763.8 891 71.0
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 2.4e-186 656.8 831 71.0
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 7.2e-138 495.7 932 59.4
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 2.4e-133 480.7 982 59.4
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 7.9e-129 465.7 905 55.6
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 1.4e-128 464.9 923 55.6
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 1.8e-128 464.5 916 56.1
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 2.3e-128 464.2 966 56.3
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 2.9e-123 447.2 926 55.6
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 5.0e-123 446.4 910 54.8
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 1.5e-122 444.9 913 56.6
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 1.5e-122 444.9 889 60.2
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 2.5e-122 444.1 902 57.8
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 2.5e-122 444.1 902 57.8
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 3.0e-120 437.2 923 55.0
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 1.5e-119 434.9 902 56.8
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 1.8e-117 427.9 810 58.1
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 4.2e-114 416.8 899 56.7
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 1.2e-113 415.2 971 51.2
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 1.6e-113 414.8 928 59.4
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 5.7e-111 406.4 911 56.9
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 9.8e-111 405.6 924 56.3
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 4.8e-110 403.3 885 57.5
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 1.0e-107 395.6 915 54.5
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 3.2e-106 390.6 899 57.5
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 3.2e-106 390.6 897 54.4
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.2e-105 388.7 898 58.1
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 8.0e-105 386.0 936 53.0
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.4e-104 385.2 906 52.6
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 7.5e-103 379.4 938 53.9
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 1.1e-101 375.6 958 51.1
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 1.8e-101 374.8 920 56.3
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 1.7e-99 368.2 920 55.1
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.5e-98 365.2 896 53.3
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 3.0e-96 357.5 965 48.2
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 2.2e-94 351.3 963 47.2
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 6.4e-94 349.7 921 55.5
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 1.0e-91 342.4 1008 49.3
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 3.0e-91 340.9 950 48.0
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 2.1e-89 334.7 938 52.7
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 2.1e-89 334.7 922 54.4
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 2.3e-88 331.3 908 50.3
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 5.8e-87 326.6 963 53.3
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 1.7e-86 325.1 928 51.3
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 6.4e-86 323.2 926 43.6
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 7.0e-85 319.7 953 51.3
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 1.2e-84 318.9 903 39.6
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 1.9e-82 311.6 932 49.4
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 2.5e-82 311.2 948 46.7
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 7.3e-82 309.7 936 50.7
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 1.2e-79 302.4 233 75.5
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 2.0e-79 301.6 950 45.5
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 9.8e-79 299.3 942 50.5
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 7.8e-76 289.7 953 45.9
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 1.0e-75 289.3 946 43.9
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 3.0e-75 287.7 235 70.6
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 3.0e-75 287.7 974 46.5
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 3.0e-75 287.7 957 46.7
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 8.6e-75 286.2 867 44.9
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 1.5e-74 285.4 951 50.3
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 1.5e-74 285.4 309 60.2
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 1.6e-73 282.0 277 63.9
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 1.2e-71 275.8 957 49.3
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 1.2e-71 275.8 964 50.7
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 4.4e-71 273.9 924 48.2
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 5.8e-71 273.5 941 42.3
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 1.3e-70 272.3 274 62.8
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 3.8e-70 270.8 212 73.1
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 1.1e-69 269.2 912 51.4
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 1.7e-67 261.9 270 61.9
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 7.3e-66 256.5 247 62.8
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 7.3e-66 256.5 233 65.7
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 7.3e-66 256.5 913 43.4
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 3.6e-65 254.2 847 45.1
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 8.1e-65 253.1 265 59.2
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 1.1e-64 252.7 265 61.9
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 1.1e-64 252.7 271 59.8
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 1.4e-64 252.3 245 63.3
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 1.8e-64 251.9 969 40.5
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 1.2e-63 249.2 219 66.7
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 2.0e-63 248.4 954 49.4
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 9.9e-63 246.1 215 64.7
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 4.9e-62 243.8 270 58.1
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 4.9e-62 243.8 270 58.1
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 6.4e-62 243.4 162 78.4
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 1.6e-60 238.8 287 56.1
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 2.7e-60 238.0 979 47.0
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 7.8e-60 236.5 142 83.8
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 1.3e-59 235.7 140 84.3
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 1.3e-59 235.7 284 55.3
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 5.1e-59 233.8 912 49.0
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 6.6e-59 233.4 922 52.3
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 4.3e-58 230.7 929 49.7
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 5.6e-58 230.3 276 56.5
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 1.3e-57 229.2 224 62.9
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 1.3e-57 229.2 135 86.7
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 2.8e-57 228.0 268 54.9
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 4.8e-57 227.3 274 54.7
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 1.1e-56 226.1 284 56.0
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 4.5e-55 220.7 287 55.1
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 9.9e-55 219.5 245 55.5
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 8.4e-54 216.5 915 49.7
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 1.1e-53 216.1 131 81.7
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 5.4e-53 213.8 240 60.4
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 7.1e-53 213.4 823 50.8
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 6.0e-52 210.3 921 45.0
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 5.6e-50 203.8 113 89.4
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 6.2e-49 200.3 921 46.8
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 2.4e-48 198.4 169 64.5
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 4.0e-48 197.6 943 43.5
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 9.0e-48 196.4 134 74.6
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 1.9e-45 188.7 198 57.1
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 7.1e-45 186.8 167 64.7
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 1.1e-42 179.5 911 50.7
Cpa.g.sc81.96 Carica papaya HOM05D005166 ORTHO05D006120 1.6e-41 175.6 431 45.0
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 8.1e-41 173.3 919 47.0
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 3.0e-35 154.8 121 67.8
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 3.0e-35 154.8 134 65.7
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 4.1e-32 144.4 129 62.8
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 2.0e-31 142.1 184 49.5
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 6.5e-22 110.5 178 42.1
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 7.9e-20 103.6 140 43.6
Oeu053892.1 Olea europaea HOM05D005166 ORTHO05D006120 2.6e-18 98.6 388 42.0
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 2.2e-17 95.5 84 67.9
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 2.2e-14 85.5 129 50.4
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 1.9e-13 82.4 57 71.9
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 1.7e-09 69.3 50 70.0
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 1.1e-08 66.6 108 38.0
CARHR122470 Cardamine hirsuta HOM05D005166 ORTHO05D006120 1.8e-08 65.9 213 45.1
MELO3C020607.2 Cucumis melo HOM05D058497 ORTHO05D006120 1.7e-06 59.3 420 33.1
SalBow6G2010 Salvia bowleyana HOM05D005166 ORTHO05D006120 5.0e-06 57.8 431 34.3


User provided reference genes

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