Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G035300 Populus trichocarpa HOM05D006297 ORTHO05D007873 2.1e-236 822.0 417 100.0
Sabra09G0025100 Salix brachista HOM05D006297 ORTHO05D010418 3.6e-188 661.8 406 85.5
Potri.001G243900 Populus trichocarpa HOM05D006297 ORTHO05D007873 7.3e-141 504.6 441 63.9
Sabra16G0148100 Salix brachista HOM05D000026 ORTHO05D000094 2.3e-110 403.3 451 55.0
Manes.02G129500 Manihot esculenta HOM05D006297 ORTHO05D007873 6.0e-103 378.6 397 55.4
QL01p030412 Quercus lobata HOM05D006297 ORTHO05D007873 4.1e-83 312.8 373 50.9
PGR119G2469 Punica granatum HOM05D006297 ORTHO05D007873 5.9e-82 308.9 363 51.0
Actinidia33772 Actinidia chinensis HOM05D006297 ORTHO05D007873 5.1e-78 295.8 344 50.6
Eucgr.B02311 Eucalyptus grandis HOM05D006297 ORTHO05D007873 2.0e-77 293.9 357 51.5
Haze_24152 Corylus avellana HOM05D006297 ORTHO05D007873 4.1e-75 286.2 376 48.9
TWI79G0566 Tripterygium wilfordii HOM05D000001 ORTHO05D010418 2.0e-74 283.9 385 48.1
Dinv34277 Davidia involucrata HOM05D006297 ORTHO05D007873 2.6e-74 283.5 348 51.4
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 5.9e-74 282.3 338 48.8
Thecc.09G316300 Theobroma cacao HOM05D006297 ORTHO05D007873 9.4e-72 275.0 349 49.3
Ciclev10029821m.g Citrus clementina HOM05D006297 ORTHO05D007873 1.8e-70 270.8 363 49.0
CiPaw.13G089900 Carya illinoinensis HOM05D006297 ORTHO05D007873 3.0e-70 270.0 377 48.5
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 7.4e-69 265.4 345 49.0
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 7.4e-69 265.4 346 48.3
Duzib168G2114 Durio zibethinus HOM05D006297 ORTHO05D007873 9.7e-69 265.0 351 49.6
Cfa011548 Carpinus fangiana HOM05D006297 ORTHO05D007873 3.5e-66 256.5 379 46.2
MELO3C020609.2 Cucumis melo HOM05D006297 ORTHO05D007873 3.5e-66 256.5 357 47.9
MSTRG.18559 Avicennia marina HOM05D006297 ORTHO05D007873 2.2e-65 253.8 418 43.1
CsaV3_1G034520 Cucumis sativus L. HOM05D006297 ORTHO05D007873 2.9e-65 253.4 358 47.5
CANSAT54G0582 Cannabis sativa HOM05D006297 ORTHO05D007873 3.6e-63 246.5 436 42.7
COL.COLO4_18571 Corchorus olitorius HOM05D006297 ORTHO05D007873 4.0e-62 243.0 341 46.6
ClCG03G001300 Citrullus lanatus HOM05D006297 ORTHO05D007873 2.6e-61 240.4 358 46.4
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 3.7e-60 236.5 361 43.5
MD11G1095400 Malus domestica HOM05D006297 ORTHO05D007873 9.1e-59 231.9 465 40.4
Migut.D00880 Erythranthe guttata HOM05D006297 ORTHO05D007873 2.0e-58 230.7 392 42.1
Nitab4.5_0006916g0050 Nicotiana tabacum HOM05D006297 ORTHO05D007873 7.7e-58 228.8 338 45.9
Peaxi162Scf00481g00328 Petunia axillaris HOM05D006297 ORTHO05D007873 1.0e-57 228.4 347 47.0
Sed0011562 Sechium edule HOM05D006297 ORTHO05D007873 1.1e-56 224.9 377 41.6
TAR369G0304 Trochodendron aralioides HOM05D006297 ORTHO05D007873 1.1e-56 224.9 316 44.6
Ca_20618_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 2.5e-56 223.8 428 38.8
Medtr4g064830 Medicago truncatula HOM05D006297 ORTHO05D007873 4.7e-55 219.5 424 39.4
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 4.7e-55 219.5 373 44.0
Lalb_Chr22g0352441 Lupinus albus HOM05D006297 ORTHO05D007873 3.4e-53 213.4 387 41.1
Sopen06g032780 Solanum pennellii HOM05D006297 ORTHO05D007873 5.7e-53 212.6 339 44.0
Solyc06g076370.4 Solanum lycopersicum HOM05D006297 ORTHO05D007873 2.8e-52 210.3 337 42.4
Prupe.6G070900 Prunus persica HOM05D006297 ORTHO05D007873 5.4e-51 206.1 399 40.1
RcHm_v2.0_Chr5g0066301 Rosa chinensis HOM05D006297 ORTHO05D007873 1.7e-49 201.1 521 35.5
DCAR_007431 Daucus carota HOM05D006297 ORTHO05D000003 2.3e-49 200.7 406 38.2
Lj3g0014453 Lotus japonicus HOM05D006297 ORTHO05D007873 2.9e-49 200.3 416 38.2
Cc01_g13310 Coffea canephora HOM05D006297 ORTHO05D007873 3.8e-49 199.9 420 38.1
Rhsim13G0077500 Rhododendron simsii HOM05D000001 ORTHO05D010418 1.1e-48 198.4 384 37.8
CSS0015831 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 5.5e-48 196.1 351 41.3
Sc12g0001260 Simmondsia chinensis HOM05D006297 ORTHO05D007873 1.2e-47 194.9 404 36.9
Nn2g13426 Nelumbo nucifera HOM05D006297 ORTHO05D007873 1.6e-47 194.5 439 35.3
Glyma.11G136300 Glycine max HOM05D006297 ORTHO05D007873 2.8e-47 193.7 441 37.9
Psat7g210960 Pisum sativum HOM05D006297 ORTHO05D007873 6.1e-47 192.6 439 35.5
CAN.G394.75 Capsicum annuum HOM05D006297 ORTHO05D007873 3.0e-46 190.3 339 42.5
Lj3g0003832 Lotus japonicus HOM05D006297 ORTHO05D007873 6.8e-46 189.1 358 39.1
Glyma.12G060000 Glycine max HOM05D006297 ORTHO05D007873 7.5e-45 185.7 383 38.9
TPR.G23574 Trifolium pratense HOM05D006297 ORTHO05D007873 1.3e-44 184.9 368 38.6
SGA_v2.0_scaffold54G19479 Striga asiatica HOM05D006297 ORTHO05D007873 6.3e-44 182.6 363 39.7
Sp5g14970 Schrenkiella parvula HOM05D006297 ORTHO05D007873 1.4e-43 181.4 405 37.3
Aqoxy1G00878 Aquilegia oxysepala HOM05D006297 ORTHO05D007873 1.8e-43 181.0 409 35.2
Lalb_Chr01g0003491 Lupinus albus HOM05D006297 ORTHO05D007873 4.1e-43 179.9 392 38.3
PGSC0003DMG400030329 Solanum tuberosum HOM05D006297 ORTHO05D007873 7.0e-43 179.1 258 44.6
A01p26050 Brassica napus HOM05D006297 ORTHO05D007873 9.2e-43 178.7 413 35.6
Thhalv10002567m.g Eutrema salsugineum HOM05D006297 ORTHO05D007873 9.2e-43 178.7 428 36.0
BraA01t02522Z Brassica rapa HOM05D006297 ORTHO05D007873 3.5e-42 176.8 422 36.3
Glyma.15G035500 Glycine max HOM05D006297 ORTHO05D007873 3.5e-42 176.8 402 39.1
BcaC09g49771 Brassica carinata HOM05D006297 ORTHO05D007873 5.9e-42 176.0 413 35.1
Nitab4.5_0023946g0010 Nicotiana tabacum HOM05D006297 ORTHO05D007873 7.8e-42 175.6 410 35.9
BcaB05g23510 Brassica carinata HOM05D006297 ORTHO05D007873 2.9e-41 173.7 414 35.5
Duzib170G0989 Durio zibethinus HOM05D006297 ORTHO05D007873 1.5e-40 171.4 256 47.3
A06p20810 Brassica napus HOM05D006297 ORTHO05D007873 1.9e-40 171.0 375 37.1
FvH4_3g36910 Fragaria vesca HOM05D006297 ORTHO05D007873 1.9e-40 171.0 571 31.9
Glyma.13G338800 Glycine max HOM05D006297 ORTHO05D007873 1.9e-40 171.0 396 37.6
AL5G25730 Arabidopsis lyrata HOM05D006297 ORTHO05D007873 9.5e-40 168.7 421 34.9
C03p70940 Brassica napus HOM05D006297 ORTHO05D007873 1.6e-39 167.9 390 36.4
BolC3t19369H Brassica oleracea HOM05D006297 ORTHO05D007873 1.6e-39 167.9 390 36.4
BcaC01g01889 Brassica carinata HOM05D006297 ORTHO05D007873 2.1e-39 167.5 397 36.5
CARHR154920 Cardamine hirsuta HOM05D006297 ORTHO05D007873 4.7e-39 166.4 419 36.0
Phvul.011G061900 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 8.0e-39 165.6 430 34.2
VMungo1127G1804 Vigna mungo HOM05D006297 ORTHO05D007873 3.0e-38 163.7 430 34.9
AT3G46750 Arabidopsis thaliana HOM05D006297 ORTHO05D007873 4.0e-38 163.3 426 34.5
Carub.0005s1301 Capsella rubella HOM05D006297 ORTHO05D007873 4.0e-38 163.3 423 33.8
DCAR_018924 Daucus carota HOM05D006297 ORTHO05D007873 6.8e-38 162.5 350 37.4
Lalb_Chr03g0026471 Lupinus albus HOM05D006297 ORTHO05D007873 1.5e-37 161.4 408 34.6
Aa31LG4G15680 Aethionema arabicum HOM05D006297 ORTHO05D007873 7.5e-37 159.1 422 34.6
MBI05_g35633_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 9.8e-37 158.7 294 38.8
arahy.Tifrunner.gnm1.ann1.NT76K4 Arachis hypogaea HOM05D006297 ORTHO05D007873 1.3e-36 158.3 444 33.3
BolC1t03251H Brassica oleracea HOM05D000026 ORTHO05D007873 1.7e-36 157.9 369 35.8
arahy.Tifrunner.gnm1.ann1.FG1CRE Arachis hypogaea HOM05D006297 ORTHO05D007873 8.3e-36 155.6 444 33.1
Gohir.D07G104500 Gossypium hirsutum HOM05D006297 ORTHO05D007873 1.1e-35 155.2 341 36.1
FAN11G1892 Fragaria x ananassa HOM05D006297 ORTHO05D007873 3.5e-34 150.2 571 29.9
CiPaw.14G065800 Carya illinoinensis HOM05D006297 ORTHO05D007873 2.3e-33 147.5 373 35.1
FAN16G1466 Fragaria x ananassa HOM05D006297 ORTHO05D007873 3.9e-33 146.7 549 30.1
Medtr2g097710 Medicago truncatula HOM05D006297 ORTHO05D007873 8.6e-33 145.6 364 37.4
unitig_899.g15423 Utricularia gibba HOM05D006297 ORTHO05D007873 1.1e-32 145.2 281 40.6
AUR62001745 Chenopodium quinoa HOM05D006297 ORTHO05D007873 2.1e-31 141.0 436 31.4
TPR.G6873 Trifolium pratense HOM05D006297 ORTHO05D007873 8.0e-31 139.0 361 34.1
Ca_01304_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 1.2e-29 135.2 360 36.4
Dinv42987 Davidia involucrata HOM05D006297 ORTHO05D007873 1.5e-29 134.8 375 33.6
FAN25G2608 Fragaria x ananassa HOM05D006297 ORTHO05D007873 4.4e-29 133.3 573 29.7
FAN21G2693 Fragaria x ananassa HOM05D006297 ORTHO05D007873 5.8e-29 132.9 571 28.5
SalBow6G6944 Salvia bowleyana HOM05D006297 ORTHO05D007873 1.3e-28 131.7 501 28.3
arahy.Tifrunner.gnm1.ann1.19P32Y Arachis hypogaea HOM05D006297 ORTHO05D007873 2.2e-28 131.0 353 34.6
Nn2g11187 Nelumbo nucifera HOM05D006297 ORTHO05D007873 3.7e-28 130.2 306 36.9
VMungo1080G0409 Vigna mungo HOM05D006297 ORTHO05D007873 4.9e-28 129.8 422 32.7
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 8.3e-28 129.0 436 28.7
ATR0559G346 Amborella trichopoda HOM05D006297 ORTHO05D007873 1.1e-27 128.6 306 35.3
AUR62020026 Chenopodium quinoa HOM05D006297 ORTHO05D007873 1.1e-27 128.6 387 31.8
Phvul.L008043 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 1.4e-27 128.3 455 29.7
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 5.4e-27 126.3 439 28.0
arahy.Tifrunner.gnm1.ann1.2MBI16 Arachis hypogaea HOM05D006297 ORTHO05D007873 9.2e-27 125.6 186 45.2
Psat5g118640 Pisum sativum HOM05D006297 ORTHO05D007873 1.3e-25 121.7 164 48.2
Hund04923 Selenicereus undatus HOM05D006297 ORTHO05D007873 5.0e-25 119.8 381 32.0
Lalb_Chr24g0397191 Lupinus albus HOM05D006297 ORTHO05D007873 9.5e-24 115.5 148 47.3
Dinv17042 Davidia involucrata HOM05D006297 ORTHO05D007873 1.6e-23 114.8 135 51.9
Dinv43112 Davidia involucrata HOM05D006297 ORTHO05D007873 1.6e-23 114.8 135 51.9
MBI14_g08019_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 2.8e-23 114.0 285 37.5
BcaB02g10710 Brassica carinata HOM05D006297 ORTHO05D007873 8.1e-23 112.5 250 38.0
C01p33140 Brassica napus HOM05D006297 ORTHO05D007873 8.1e-23 112.5 276 33.0
Hma1.2p1_0757F.1_g213410 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 1.3e-20 105.1 115 56.5
Dinv17043 Davidia involucrata HOM05D006297 ORTHO05D007873 1.7e-20 104.8 103 60.2
Dinv43111 Davidia involucrata HOM05D006297 ORTHO05D007873 1.7e-20 104.8 103 60.2
Lsat_1_v5_gn_8_72960 Lactuca sativa HOM05D006297 ORTHO05D007873 6.4e-20 102.8 334 31.4
HanXRQChr05g0135261 Helianthus annuus HOM05D006297 ORTHO05D007873 1.2e-18 98.6 332 30.7
EL10Ac7g16061 Beta vulgaris HOM05D006297 ORTHO05D007873 1.2e-15 88.6 426 26.1
SalBow1G2607 Salvia bowleyana HOM05D006297 ORTHO05D007873 2.1e-15 87.8 384 27.3
QL10p061553 Quercus lobata HOM05D006297 ORTHO05D007873 3.1e-14 84.0 278 30.2
Ah.08g219890 Amaranthus hybridus HOM05D006297 ORTHO05D007873 2.9e-12 77.4 96 46.9
CDE07G0208 Ceratophyllum demersum HOM05D006297 ORTHO05D007873 3.8e-12 77.0 223 30.9
QL10p066115 Quercus lobata HOM05D006297 ORTHO05D017888 4.9e-12 76.6 68 55.9
Lsat_1_v5_gn_5_169521 Lactuca sativa HOM05D006297 ORTHO05D007873 1.2e-10 72.0 330 27.9
HPP92_015541 Vanilla planifolia HOM05D043147 ORTHO05D007873 1.3e-09 68.6 289 29.1
HanXRQChr11g0340671 Helianthus annuus HOM05D006297 ORTHO05D007873 5.1e-09 66.6 111 40.5
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 8.1e-07 59.3 310 27.1
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 1.4e-06 58.5 189 26.5
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.8e-06 58.2 310 26.8
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 9.0e-06 55.8 242 26.4


User provided reference genes

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