Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 3.0e-165 585.1 293 100.0
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 3.1e-146 521.9 290 90.7
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 1.9e-143 512.7 295 86.8
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 9.1e-130 467.2 270 87.8
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 7.4e-116 421.0 300 73.7
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 2.5e-111 406.0 287 72.5
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 1.6e-110 403.3 287 72.5
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 3.3e-108 395.6 274 71.9
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 5.7e-108 394.8 294 69.4
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 8.3e-107 391.0 287 67.6
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 6.5e-104 381.3 289 67.1
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 5.5e-103 378.3 287 67.2
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 4.7e-102 375.2 287 66.6
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 6.1e-102 374.8 287 67.6
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 1.8e-101 373.2 286 68.9
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 5.2e-101 371.7 294 66.7
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 8.8e-101 370.9 288 69.4
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 1.5e-100 370.2 286 67.8
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 2.0e-100 369.8 290 64.8
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 3.4e-100 369.0 251 71.3
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 5.7e-100 368.2 251 70.9
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 1.3e-99 367.1 295 66.1
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 1.8e-98 363.2 251 70.9
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 2.4e-98 362.8 293 64.5
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 3.1e-98 362.5 291 64.9
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 4.1e-98 362.1 239 73.6
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.2e-97 360.5 324 59.6
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 1.2e-97 360.5 249 71.1
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 1.2e-97 360.5 297 62.6
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 1.3e-96 357.1 286 64.0
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 1.3e-96 357.1 289 64.7
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 5.0e-96 355.1 272 65.8
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 5.0e-96 355.1 287 63.8
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 8.6e-96 354.4 237 69.6
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 8.6e-96 354.4 253 67.2
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 8.6e-96 354.4 234 71.8
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 8.6e-96 354.4 234 71.8
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 1.9e-95 353.2 285 62.8
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 3.3e-95 352.4 234 70.5
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 2.8e-94 349.4 321 57.0
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 6.1e-94 348.2 230 72.2
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 1.4e-93 347.1 289 62.3
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.8e-93 346.7 334 56.9
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 3.0e-93 345.9 239 68.2
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 3.0e-93 345.9 291 62.5
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 6.8e-93 344.7 285 62.8
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 8.9e-93 344.4 314 59.9
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 2.0e-92 343.2 284 61.6
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 2.0e-92 343.2 289 62.6
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 2.0e-92 343.2 282 63.1
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 3.4e-92 342.4 290 62.8
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 4.4e-92 342.0 317 57.4
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 9.8e-92 340.9 289 62.3
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 1.3e-91 340.5 240 69.6
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 1.7e-91 340.1 239 68.6
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 2.2e-91 339.7 299 60.2
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 2.8e-91 339.3 293 59.7
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 4.9e-91 338.6 284 60.2
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 1.4e-90 337.0 284 60.9
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 2.4e-90 336.3 264 66.3
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 3.1e-90 335.9 285 60.0
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 4.1e-90 335.5 285 60.7
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 4.1e-90 335.5 256 64.8
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 4.1e-90 335.5 289 61.6
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 7.0e-90 334.7 299 59.5
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 1.6e-89 333.6 263 67.7
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 1.6e-89 333.6 295 59.3
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 2.0e-89 333.2 292 59.9
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 7.8e-89 331.3 293 59.7
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 2.3e-88 329.7 292 58.9
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 2.3e-88 329.7 293 59.4
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 2.3e-88 329.7 296 60.1
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 6.6e-88 328.2 293 59.4
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 6.6e-88 328.2 293 59.4
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 6.6e-88 328.2 293 59.4
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 8.6e-88 327.8 353 52.4
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 8.6e-88 327.8 277 65.3
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 1.1e-87 327.4 292 59.9
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 1.9e-87 326.6 290 59.3
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 9.5e-87 324.3 239 66.9
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 4.7e-86 322.0 235 67.2
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 2.3e-85 319.7 235 66.8
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 3.1e-85 319.3 280 60.7
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 4.0e-85 318.9 303 57.4
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 4.0e-85 318.9 289 60.6
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 6.8e-85 318.2 269 62.5
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 2.6e-84 316.2 251 61.8
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 3.2e-82 309.3 215 68.4
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 3.2e-82 309.3 289 59.5
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 1.3e-80 303.9 235 70.6
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 1.1e-79 300.8 286 57.7
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 7.3e-79 298.1 276 59.4
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 7.3e-79 298.1 276 59.4
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 7.3e-79 298.1 276 59.4
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 4.7e-78 295.4 310 54.8
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 5.2e-77 292.0 308 53.6
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 1.2e-76 290.8 259 56.8
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 2.9e-75 286.2 237 59.1
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 1.1e-74 284.3 233 64.8
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 1.6e-73 280.4 263 55.1
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 6.0e-73 278.5 295 52.5
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.7e-72 276.9 181 73.5
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 8.6e-72 274.6 240 61.2
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 3.2e-66 256.1 202 64.4
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 7.8e-65 251.5 214 57.5
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 1.3e-64 250.8 250 56.8
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 1.9e-63 246.9 248 48.8
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 1.2e-62 244.2 461 37.5
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 7.6e-60 235.0 245 49.4
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 1.1e-58 231.1 237 49.4
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 1.0e-56 224.6 194 60.3
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 1.2e-52 211.1 237 45.6
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 1.5e-47 194.1 161 59.6
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 5.6e-47 192.2 165 61.2
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 5.3e-45 185.7 167 57.5
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 7.6e-44 181.8 135 67.4
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 4.3e-39 166.0 145 57.9
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 1.8e-37 160.6 238 39.9
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 1.5e-36 157.5 115 62.6
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 4.5e-36 156.0 135 63.0
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 3.8e-35 152.9 153 49.0
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 5.1e-32 142.5 129 60.5
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 1.5e-31 141.0 75 85.3
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 1.5e-31 141.0 88 75.0
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 4.8e-30 136.0 129 56.6
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 1.8e-29 134.0 75 80.0
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 1.0e-27 128.3 115 55.7
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 2.1e-25 120.6 92 65.2
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 2.7e-25 120.2 67 82.1
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 6.1e-25 119.0 88 68.2
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 6.1e-25 119.0 88 68.2
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 2.8e-22 110.2 138 46.4
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 2.0e-20 104.0 74 66.2
COL.COLO4_35627 Corchorus olitorius HOM05D005444 ORTHO05D001950 3.9e-16 89.7 93 54.8
TPR.G27777 Trifolium pratense HOM05D005444 ORTHO05D006773 1.1e-15 88.2 55 69.1
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 2.0e-15 87.4 46 84.8
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 4.3e-15 86.3 44 84.1
TAR636G2897 Trochodendron aralioides HOM05D005444 ORTHO05D006773 3.7e-14 83.2 80 57.5
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 3.1e-13 80.1 42 85.7
Glyma.11G138967 Glycine max HOM05D005444 ORTHO05D006773 9.1e-13 78.6 72 56.9
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 9.1e-13 78.6 72 56.9
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 3.4e-12 76.6 190 30.5
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 1.4e-10 71.2 42 76.2
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 1.9e-10 70.9 200 28.0
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 4.7e-09 66.2 76 48.7
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 2.3e-08 63.9 186 29.6


User provided reference genes

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