Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G032100 Populus trichocarpa HOM05D004332 ORTHO05D005116 4.8e-70 267.7 134 100.0
Sabra09G0022800 Salix brachista HOM05D004332 ORTHO05D005116 2.2e-59 232.3 121 93.4
Sabra16G0146000 Salix brachista HOM05D004332 ORTHO05D005116 8.0e-57 223.8 148 80.4
GSVIVG01024938001 Vitis vinifera HOM05D004332 ORTHO05D005116 3.0e-56 221.9 134 84.3
Manes.02G131400 Manihot esculenta HOM05D004332 ORTHO05D005116 6.8e-56 220.7 134 82.1
Prupe.6G074300 Prunus persica HOM05D004332 ORTHO05D005116 6.8e-56 220.7 134 82.1
Manes.01G172400 Manihot esculenta HOM05D004332 ORTHO05D005116 2.0e-55 219.2 134 80.6
Potri.001G241500 Populus trichocarpa HOM05D004332 ORTHO05D005116 2.6e-55 218.8 134 84.3
CiPaw.13G092600 Carya illinoinensis HOM05D004332 ORTHO05D005116 3.4e-55 218.4 134 83.6
CSS0035025 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 1.3e-54 216.5 134 83.6
Gohir.A05G094800 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.3e-54 216.5 134 80.6
Gohir.D05G095080 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.3e-54 216.5 134 80.6
TWI31G0816 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 1.3e-54 216.5 134 80.6
Thecc.09G319900 Theobroma cacao HOM05D004332 ORTHO05D005116 1.7e-54 216.1 134 82.1
Ciclev10029562m.g Citrus clementina HOM05D004332 ORTHO05D005116 2.2e-54 215.7 135 82.2
COL.COLO4_18528 Corchorus olitorius HOM05D004332 ORTHO05D005116 2.8e-54 215.3 134 80.6
Dinv04179 Davidia involucrata HOM05D004332 ORTHO05D005116 2.8e-54 215.3 134 83.6
Gohir.D05G095200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.8e-54 215.3 134 79.9
Carub.0008s2008 Capsella rubella HOM05D004332 ORTHO05D005116 3.7e-54 214.9 134 81.3
Dinv17021 Davidia involucrata HOM05D004332 ORTHO05D005116 3.7e-54 214.9 134 82.1
Dinv42969 Davidia involucrata HOM05D004332 ORTHO05D005116 3.7e-54 214.9 134 82.1
Dinv43130 Davidia involucrata HOM05D004332 ORTHO05D005116 3.7e-54 214.9 134 82.1
MD03G1090100 Malus domestica HOM05D004332 ORTHO05D005116 3.7e-54 214.9 134 79.9
CiPaw.14G067900 Carya illinoinensis HOM05D004332 ORTHO05D005116 6.3e-54 214.2 134 82.1
Actinidia34413 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.8e-53 212.6 134 82.8
CANSAT54G0234 Cannabis sativa HOM05D004332 ORTHO05D005116 1.8e-53 212.6 134 79.9
Gorai.009G098500 Gossypium raimondii HOM05D004332 ORTHO05D005116 2.4e-53 212.2 134 79.9
AT5G59410 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 3.1e-53 211.8 134 80.6
Duzib168G2052 Durio zibethinus HOM05D004332 ORTHO05D005116 3.1e-53 211.8 134 79.1
Gohir.D03G124100 Gossypium hirsutum HOM05D004332 ORTHO05D005116 3.1e-53 211.8 134 79.1
Gohir.D07G103500 Gossypium hirsutum HOM05D004332 ORTHO05D005116 3.1e-53 211.8 121 84.3
Rhsim01G0229500 Rhododendron simsii HOM05D004332 ORTHO05D005116 4.1e-53 211.5 134 79.9
Sp6g21090 Schrenkiella parvula HOM05D004332 ORTHO05D005116 4.1e-53 211.5 134 79.1
Duzib150G0187 Durio zibethinus HOM05D004332 ORTHO05D005116 5.4e-53 211.1 134 80.6
MD11G1099700 Malus domestica HOM05D004332 ORTHO05D005116 5.4e-53 211.1 135 79.3
Eucgr.J02045 Eucalyptus grandis HOM05D004332 ORTHO05D005116 7.0e-53 210.7 134 79.9
THA.LOC104814879 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 7.0e-53 210.7 134 78.4
TAR633G2148 Trochodendron aralioides HOM05D004332 ORTHO05D005116 7.0e-53 210.7 134 79.1
Thhalv10015001m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 9.1e-53 210.3 137 80.3
Gohir.A03G043200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 9.1e-53 210.3 121 81.8
TWI75G0441 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 9.1e-53 210.3 134 79.9
arahy.Tifrunner.gnm1.ann1.KAW7XL Arachis hypogaea HOM05D004332 ORTHO05D005116 1.2e-52 209.9 134 78.4
CSS0027892 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 1.6e-52 209.5 134 81.3
AL8G35880 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 2.0e-52 209.1 134 77.6
QL01p031517 Quercus lobata HOM05D004332 ORTHO05D005116 2.0e-52 209.1 133 78.2
CARHR285780 Cardamine hirsuta HOM05D004332 ORTHO05D005116 2.7e-52 208.8 134 77.6
Glyma.11G138900 Glycine max HOM05D004332 ORTHO05D005116 2.7e-52 208.8 134 79.1
Gorai.003G130800 Gossypium raimondii HOM05D004332 ORTHO05D005116 2.7e-52 208.8 135 78.5
Lalb_Chr03g0026581 Lupinus albus HOM05D004332 ORTHO05D005116 3.5e-52 208.4 134 78.4
Lsat_1_v5_gn_9_23661 Lactuca sativa HOM05D004332 ORTHO05D005116 4.5e-52 208.0 134 78.4
VMungo1127G1024 Vigna mungo HOM05D004332 ORTHO05D005116 1.0e-51 206.8 134 76.9
HanXRQChr08g0237001 Helianthus annuus HOM05D004332 ORTHO05D005116 1.3e-51 206.5 134 78.4
Glyma.12G062500 Glycine max HOM05D004332 ORTHO05D005116 2.2e-51 205.7 134 76.9
Actinidia37195 Actinidia chinensis HOM05D004332 ORTHO05D005116 3.8e-51 204.9 134 79.1
Gohir.A07G099000 Gossypium hirsutum HOM05D004332 ORTHO05D005116 3.8e-51 204.9 134 77.6
Cc01_g13020 Coffea canephora HOM05D004332 ORTHO05D005116 5.0e-51 204.5 134 76.1
Lalb_Chr19g0137881 Lupinus albus HOM05D004332 ORTHO05D005116 5.0e-51 204.5 134 76.1
Nn2g11136 Nelumbo nucifera HOM05D004332 ORTHO05D005116 6.5e-51 204.1 134 75.4
Phvul.011G063600 Phaseolus vulgaris HOM05D004332 ORTHO05D005116 8.5e-51 203.8 134 77.6
Migut.N00901 Erythranthe guttata HOM05D004332 ORTHO05D005116 1.5e-50 203.0 134 76.1
FAN25G2250 Fragaria x ananassa HOM05D004332 ORTHO05D005116 1.5e-50 203.0 135 76.3
CARHR122250 Cardamine hirsuta HOM05D004332 ORTHO05D005116 1.9e-50 202.6 134 74.6
FvH4_3g36490 Fragaria vesca HOM05D004332 ORTHO05D005116 1.9e-50 202.6 135 76.3
FAN11G3576 Fragaria x ananassa HOM05D004332 ORTHO05D005116 1.9e-50 202.6 135 76.3
Carub.0004s1001 Capsella rubella HOM05D004332 ORTHO05D005116 2.5e-50 202.2 134 73.9
TPR.G34281 Trifolium pratense HOM05D004332 ORTHO05D005116 2.5e-50 202.2 134 77.6
Thhalv10017410m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 3.2e-50 201.8 134 74.6
FAN16G1081 Fragaria x ananassa HOM05D004332 ORTHO05D005116 3.2e-50 201.8 135 76.3
THA.LOC104810775 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 3.2e-50 201.8 134 76.9
Aa31LG5G7210 Aethionema arabicum HOM05D004332 ORTHO05D005116 4.2e-50 201.4 134 73.1
Lj3g0024178 Lotus japonicus HOM05D004332 ORTHO05D005116 4.2e-50 201.4 134 73.9
Aa31sc23G410 Aethionema arabicum HOM05D004332 ORTHO05D005116 7.2e-50 200.7 134 75.4
RcHm_v2.0_Chr5g0065351 Rosa chinensis HOM05D004332 ORTHO05D005116 7.2e-50 200.7 136 74.3
SGA_v2.0_scaffold132G34538 Striga asiatica HOM05D004332 ORTHO05D005116 7.2e-50 200.7 134 75.4
Oeu017398.1 Olea europaea HOM05D004332 ORTHO05D005116 1.2e-49 199.9 134 74.6
Rhsim13G0081500 Rhododendron simsii HOM05D004332 ORTHO05D005116 1.2e-49 199.9 134 76.1
Hma1.2p1_0615F.1_g189860 Hydrangea macrophylla HOM05D004332 ORTHO05D005116 2.1e-49 199.1 134 77.6
MBI05_g28381_MAGBIO Magnolia biondii HOM05D004332 ORTHO05D005116 2.7e-49 198.7 134 73.1
THA.LOC104800671 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 2.7e-49 198.7 134 73.9
A04p21990 Brassica napus HOM05D004332 ORTHO05D005116 3.6e-49 198.4 134 73.1
AL146U10030 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 4.7e-49 198.0 137 73.0
BraA04t17767Z Brassica rapa HOM05D004332 ORTHO05D005116 4.7e-49 198.0 134 72.4
ECA247G3838 Erigeron canadensis HOM05D004332 ORTHO05D005116 6.1e-49 197.6 120 79.2
BcaB06g28270 Brassica carinata HOM05D004332 ORTHO05D005116 8.0e-49 197.2 134 71.6
ClCG02G020050 Citrullus lanatus HOM05D004332 ORTHO05D005116 8.0e-49 197.2 121 78.5
Psat5g286720 Pisum sativum HOM05D004332 ORTHO05D005116 1.0e-48 196.8 134 74.6
THA.LOC104826319 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 1.0e-48 196.8 134 73.1
AT2G29020 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 1.4e-48 196.4 134 70.9
ClCG03G001410 Citrullus lanatus HOM05D004332 ORTHO05D005116 1.4e-48 196.4 134 73.9
Sp4g11830 Schrenkiella parvula HOM05D004332 ORTHO05D005116 1.4e-48 196.4 134 72.4
BcaC02g08120 Brassica carinata HOM05D004332 ORTHO05D005116 1.8e-48 196.1 134 71.6
C04p58150 Brassica napus HOM05D004332 ORTHO05D005116 1.8e-48 196.1 134 71.6
MELO3C025906.2 Cucumis melo HOM05D004332 ORTHO05D005116 1.8e-48 196.1 134 72.4
Gorai.001G111400 Gossypium raimondii HOM05D004332 ORTHO05D005116 1.8e-48 196.1 114 82.5
BolC4t27343H Brassica oleracea HOM05D004332 ORTHO05D005116 2.3e-48 195.7 134 71.6
CsaV3_6G016760 Cucumis sativus L. HOM05D004332 ORTHO05D005116 2.3e-48 195.7 134 71.6
Medtr2g097270 Medicago truncatula HOM05D004332 ORTHO05D005116 2.3e-48 195.7 134 73.9
SalBow2G0012 Salvia bowleyana HOM05D004332 ORTHO05D005116 3.0e-48 195.3 135 71.1
ATR0559G209 Amborella trichopoda HOM05D004332 ORTHO05D005116 5.2e-48 194.5 134 74.6
A07p19440 Brassica napus HOM05D004332 ORTHO05D005116 6.8e-48 194.1 134 69.4
Oeu064111.2 Olea europaea HOM05D004332 ORTHO05D005116 6.8e-48 194.1 120 75.8
unitig_6.g29275 Utricularia gibba HOM05D004332 ORTHO05D005116 6.8e-48 194.1 134 70.9
unitig_747.g21434 Utricularia gibba HOM05D004332 ORTHO05D005116 6.8e-48 194.1 134 70.9
BcaC02g11036 Brassica carinata HOM05D004332 ORTHO05D005116 8.8e-48 193.7 134 69.4
C04p21940 Brassica napus HOM05D004332 ORTHO05D005116 8.8e-48 193.7 134 69.4
BolC4t23714H Brassica oleracea HOM05D004332 ORTHO05D005116 8.8e-48 193.7 134 69.4
BraA07t29650Z Brassica rapa HOM05D004332 ORTHO05D005116 1.2e-47 193.4 134 68.7
BcaB02g10224 Brassica carinata HOM05D004332 ORTHO05D005116 1.5e-47 193.0 134 70.1
Sed0013921 Sechium edule HOM05D004332 ORTHO05D005116 1.5e-47 193.0 134 70.9
Sed0019241 Sechium edule HOM05D004332 ORTHO05D005116 1.5e-47 193.0 134 71.6
Hund04945 Selenicereus undatus HOM05D004332 ORTHO05D005116 1.5e-47 193.0 124 73.4
PGSC0003DMG400030417 Solanum tuberosum HOM05D004332 ORTHO05D005116 1.5e-47 193.0 126 73.8
AUR62009559 Chenopodium quinoa HOM05D004332 ORTHO05D005116 2.6e-47 192.2 124 70.2
EL10Ac7g16034 Beta vulgaris HOM05D004332 ORTHO05D005116 3.4e-47 191.8 134 71.6
MELO3C020622.2 Cucumis melo HOM05D004332 ORTHO05D005116 3.4e-47 191.8 134 70.9
PGR102G2585 Punica granatum HOM05D004332 ORTHO05D005116 3.4e-47 191.8 136 74.3
Sc12g0001450 Simmondsia chinensis HOM05D004332 ORTHO05D005116 4.4e-47 191.4 124 73.4
DCAR_018915 Daucus carota HOM05D004332 ORTHO05D005116 7.5e-47 190.7 123 74.8
Nitab4.5_0000463g0140 Nicotiana tabacum HOM05D004332 ORTHO05D005116 1.3e-46 189.9 134 70.9
Oeu002423.1 Olea europaea HOM05D004332 ORTHO05D005116 1.3e-46 189.9 134 70.1
vmacro14542 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 1.3e-46 189.9 123 77.2
CAN.G394.64 Capsicum annuum HOM05D004332 ORTHO05D005116 1.7e-46 189.5 126 73.0
Nitab4.5_0001326g0120 Nicotiana tabacum HOM05D004332 ORTHO05D005116 1.7e-46 189.5 134 70.9
Ah.08g219640 Amaranthus hybridus HOM05D004332 ORTHO05D005116 2.2e-46 189.1 134 69.4
Sed0025770 Sechium edule HOM05D004332 ORTHO05D005116 2.8e-46 188.7 134 69.4
AUR62001771 Chenopodium quinoa HOM05D004332 ORTHO05D005116 3.7e-46 188.3 130 67.7
PSO151G0214 Papaver somniferum HOM05D004332 ORTHO05D005116 3.7e-46 188.3 116 75.9
Sc21g0005870 Simmondsia chinensis HOM05D004332 ORTHO05D005116 3.7e-46 188.3 134 72.4
Solyc06g076260.3 Solanum lycopersicum HOM05D004332 ORTHO05D005116 3.7e-46 188.3 126 70.6
arahy.Tifrunner.gnm1.ann1.WMUR0J Arachis hypogaea HOM05D004332 ORTHO05D005116 4.9e-46 188.0 121 76.9
CsaV3_1G034360 Cucumis sativus L. HOM05D004332 ORTHO05D005116 6.3e-46 187.6 134 70.9
SEGI_11468 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 1.4e-45 186.4 134 69.4
PSO339G1935 Papaver somniferum HOM05D004332 ORTHO05D005116 2.4e-45 185.7 124 71.8
TAR636G3330 Trochodendron aralioides HOM05D004332 ORTHO05D005116 2.4e-45 185.7 121 77.7
Aqoxy1G00923 Aquilegia oxysepala HOM05D004332 ORTHO05D005116 3.1e-45 185.3 112 76.8
CDE04G0625 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 2.7e-44 182.2 134 66.4
Lsat_1_v5_gn_8_73521 Lactuca sativa HOM05D004332 ORTHO05D005116 1.3e-43 179.9 125 71.2
arahy.Tifrunner.gnm1.ann1.TT4C38 Arachis hypogaea HOM05D004332 ORTHO05D005116 8.6e-43 177.2 131 70.2
CDE07G0755 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 1.1e-42 176.8 134 64.2
Atru.chr3.3947 Acer truncatum HOM05D004332 ORTHO05D005116 3.3e-42 175.3 142 66.9
arahy.Tifrunner.gnm1.ann1.A22IES Arachis hypogaea HOM05D004332 ORTHO05D005116 9.5e-42 173.7 126 69.8
HanXRQChr07g0197291 Helianthus annuus HOM05D004332 ORTHO05D005116 1.4e-40 169.9 124 68.5
Os05g0110600 Oryza sativa ssp. japonica HOM05D004332 ORTHO05D005116 1.4e-40 169.9 126 64.3
Zm00001eb266910 Zea mays HOM05D004332 ORTHO05D005116 5.2e-40 167.9 130 64.6
SMO304G0081 Selaginella moellendorffii HOM05D004332 ORTHO05D005116 6.4e-38 161.0 123 59.3
Mapoly0045s0062 Marchantia polymorpha HOM05D004332 ORTHO05D005116 3.2e-37 158.7 134 56.7
Nn2g13368 Nelumbo nucifera HOM05D004332 ORTHO05D005116 4.1e-37 158.3 91 81.3
Pp3c16_16760 Physcomitrium patens HOM05D004332 ORTHO05D005116 3.5e-36 155.2 122 62.3
AagrBONN_evm.TU.Sc2ySwM_228.3328 Anthoceros agrestis HOM05D004332 ORTHO05D005116 1.9e-34 149.4 115 61.7
Pp3c6_17300 Physcomitrium patens HOM05D004332 ORTHO05D005116 2.6e-31 139.0 119 53.8
Actinidia07026 Actinidia chinensis HOM05D004332 ORTHO05D005116 3.9e-27 125.2 85 76.5
Sopen06g032690 Solanum pennellii HOM05D004332 ORTHO05D005116 6.6e-27 124.4 78 73.1
Haze_24115 Corylus avellana HOM05D004332 ORTHO05D005116 1.6e-25 119.8 80 76.2
FAN21G1178 Fragaria x ananassa HOM05D004332 ORTHO05D005116 9.8e-23 110.5 79 73.4
AL4G23580 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 3.7e-22 108.6 79 68.4
vmacro03061 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 1.1e-21 107.1 76 72.4
TAR369G0503 Trochodendron aralioides HOM05D004332 ORTHO05D005116 5.4e-21 104.8 76 68.4
SEGI_12680 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 7.8e-20 100.9 81 63.0
Actinidia23932 Actinidia chinensis HOM05D004332 ORTHO05D005116 8.6e-19 97.4 60 81.7
Peaxi162Scf00774g00129 Petunia axillaris HOM05D004332 ORTHO05D005116 9.5e-18 94.0 56 76.8
SHI47893 Sapria himalayana HOM05D004332 ORTHO05D005116 6.4e-14 81.3 50 78.0
HPP92_028206 Vanilla planifolia HOM05D004332 ORTHO05D005116 1.7e-11 73.2 45 73.3
Cre08.g376000 Chlamydomonas reinhardtii HOM05D004332 ORTHO05D005116 5.6e-10 68.2 95 35.8
Eucgr.H02119 Eucalyptus grandis HOM05D004332 ORTHO05D005116 3.1e-08 62.4 43 69.8


User provided reference genes

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