Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 7.4e-256 886.7 455 100.0
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 6.6e-228 793.9 458 87.8
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 7.6e-200 700.7 456 76.1
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 2.4e-198 695.7 458 75.5
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 5.4e-198 694.5 456 75.9
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 6.6e-196 687.6 467 73.2
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 4.3e-195 684.9 456 76.1
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 4.7e-194 681.4 452 74.1
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.4e-193 679.9 452 73.5
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 1.8e-193 679.5 455 73.4
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 4.0e-193 678.3 452 73.2
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 2.0e-192 676.0 456 75.0
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 1.1e-190 670.2 455 73.2
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.4e-190 669.8 455 73.2
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 1.9e-190 669.5 448 72.8
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 2.4e-190 669.1 453 73.1
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 5.4e-190 667.9 453 73.3
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 3.5e-189 665.2 455 73.0
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.1e-187 660.2 454 72.9
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 3.3e-187 658.7 450 72.7
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 2.1e-186 656.0 399 81.5
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 2.1e-186 656.0 454 70.9
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 2.8e-186 655.6 454 72.2
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 2.0e-184 649.4 454 72.2
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 2.0e-184 649.4 451 71.8
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 2.6e-184 649.0 454 70.3
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 2.2e-183 646.0 453 71.3
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 2.2e-183 646.0 452 72.3
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 2.9e-183 645.6 454 70.0
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 1.1e-182 643.7 470 67.2
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.9e-182 642.9 449 69.9
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 2.4e-182 642.5 453 70.6
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 3.2e-182 642.1 454 70.3
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 3.2e-182 642.1 449 69.7
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 9.3e-182 640.6 449 71.3
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 1.2e-181 640.2 448 71.7
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 1.2e-181 640.2 454 70.0
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 1.6e-181 639.8 449 69.3
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 2.1e-181 639.4 450 70.4
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 3.5e-181 638.6 450 70.4
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 3.5e-181 638.6 450 70.4
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 4.6e-181 638.3 449 71.9
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 6.0e-181 637.9 448 70.5
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 7.9e-181 637.5 450 70.0
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.0e-180 637.1 450 70.4
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.8e-180 636.3 454 68.3
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 2.3e-180 636.0 454 70.5
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 3.0e-180 635.6 454 70.3
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 3.9e-180 635.2 455 70.1
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 3.9e-180 635.2 450 69.8
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 3.9e-180 635.2 449 69.5
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 8.7e-180 634.0 481 67.6
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 8.7e-180 634.0 481 67.6
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 1.1e-179 633.6 450 70.0
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 1.9e-179 632.9 454 68.3
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 2.5e-179 632.5 471 67.5
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 2.5e-179 632.5 449 70.4
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 2.5e-179 632.5 449 71.3
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 3.3e-179 632.1 455 70.1
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 5.6e-179 631.3 450 69.8
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 7.4e-179 630.9 454 68.1
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 2.1e-178 629.4 458 69.9
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 2.8e-178 629.0 449 69.7
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 3.7e-178 628.6 450 69.1
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 1.4e-177 626.7 455 69.5
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 1.8e-177 626.3 451 69.4
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 3.1e-177 625.5 449 68.8
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 4.0e-177 625.2 455 69.9
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 4.0e-177 625.2 449 69.5
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 4.0e-177 625.2 455 69.2
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 6.9e-177 624.4 449 69.0
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 1.5e-176 623.2 455 67.5
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 1.5e-176 623.2 455 67.5
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 2.6e-176 622.5 449 69.0
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 2.6e-176 622.5 449 69.0
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 7.6e-176 620.9 456 69.1
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 9.9e-176 620.5 453 69.1
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 1.3e-175 620.2 391 77.7
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 6.4e-175 617.8 455 67.3
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 2.4e-174 615.9 455 68.6
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 5.5e-174 614.8 442 68.1
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 5.5e-174 614.8 449 68.8
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 7.1e-174 614.4 455 68.6
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 9.3e-174 614.0 481 63.8
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 1.2e-173 613.6 476 65.5
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 4.6e-173 611.7 496 64.3
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 6.0e-173 611.3 449 67.9
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 1.0e-172 610.5 458 67.7
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 6.7e-172 607.8 453 67.3
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 1.1e-171 607.1 423 70.9
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 4.3e-171 605.1 450 65.8
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 1.3e-170 603.6 467 65.3
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 1.6e-170 603.2 476 65.3
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 1.1e-169 600.5 456 65.1
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.4e-169 600.1 454 65.2
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.4e-169 600.1 416 73.3
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 2.6e-168 595.9 461 66.2
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 3.4e-168 595.5 470 65.5
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 5.8e-168 594.7 450 65.6
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 1.0e-164 583.9 404 72.5
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.8e-164 583.2 444 66.0
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 6.7e-164 581.3 466 62.7
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 4.8e-162 575.1 457 62.1
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 4.1e-161 572.0 552 55.6
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 6.5e-159 564.7 477 61.6
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 2.5e-158 562.8 392 69.9
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.5e-152 543.5 441 61.7
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 5.5e-150 535.0 394 66.5
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 3.6e-149 532.3 473 58.4
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 6.7e-148 528.1 453 57.2
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.5e-147 526.9 410 63.7
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 8.2e-146 521.2 445 58.4
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.3e-143 513.8 389 64.5
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.2e-143 513.1 444 57.7
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 2.2e-143 513.1 454 56.8
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 1.9e-142 510.0 445 55.7
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 8.8e-140 501.1 354 70.3
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 6.5e-135 485.0 455 57.8
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 7.5e-131 471.5 447 53.9
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.7e-127 460.3 443 58.2
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 1.5e-126 457.2 443 52.1
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 2.5e-126 456.4 451 52.1
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 1.0e-124 451.1 285 76.1
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 3.4e-123 446.0 450 49.6
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 2.8e-122 443.0 397 54.9
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 3.7e-122 442.6 315 70.8
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 2.3e-119 433.3 452 48.2
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 1.5e-118 430.6 449 48.6
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.5e-118 430.6 452 47.8
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 2.4e-113 413.3 312 75.6
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 8.6e-111 404.8 453 46.8
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 9.5e-102 374.8 399 51.1
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 3.1e-100 369.8 293 63.5
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 7.0e-97 358.6 277 65.7
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.9e-94 350.5 252 68.7
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 7.6e-83 312.0 451 39.2
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 4.9e-74 282.7 458 39.5
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 4.3e-70 269.6 198 65.7
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 9.6e-62 241.9 174 69.5
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.3e-55 221.5 129 79.8
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 5.1e-55 219.5 158 68.4
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 2.6e-51 207.2 158 63.3
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.4e-44 184.9 192 49.5
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 2.4e-44 184.1 125 68.0
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 2.9e-42 177.2 121 74.4
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.1e-33 148.7 130 60.0
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 9.7e-30 135.6 94 68.1
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.3e-29 135.2 116 59.5
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 3.5e-27 127.1 98 60.2
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 2.5e-25 120.9 77 71.4
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 3.7e-21 107.1 84 64.3
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.1e-20 105.5 132 43.9
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 2.3e-15 87.8 60 70.0
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 5.2e-15 86.7 63 63.5
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 9.7e-14 82.4 57 68.4
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 1.1e-09 68.9 77 53.2
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 4.2e-09 67.0 42 76.2
FvH4_5g06577 Fragaria vesca HOM05D000025 ORTHO05D000040 3.4e-06 57.4 37 75.7


User provided reference genes

Program Settings