Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.4e-39 166.0 93 100.0
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 2.2e-29 132.1 89 80.9
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.9e-28 129.0 93 78.5
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 1.9e-25 119.0 90 75.6
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 2.4e-20 102.1 92 66.3
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 3.5e-19 98.2 92 67.4
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 4.6e-19 97.8 93 69.9
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 7.8e-19 97.1 77 71.4
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 7.8e-19 97.1 88 68.2
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 1.7e-18 95.9 80 73.8
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 3.0e-18 95.1 76 67.1
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 3.9e-18 94.7 90 66.7
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 5.1e-18 94.4 82 61.0
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 5.1e-18 94.4 82 61.0
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 6.6e-18 94.0 93 57.0
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.1e-17 93.2 93 57.0
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 1.5e-17 92.8 90 64.4
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.5e-17 92.8 86 60.5
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 1.5e-17 92.8 89 62.9
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 1.5e-17 92.8 72 66.7
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 2.5e-17 92.0 90 62.2
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 2.5e-17 92.0 75 69.3
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 3.3e-17 91.7 86 59.3
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 3.3e-17 91.7 86 59.3
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 3.3e-17 91.7 86 59.3
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 3.3e-17 91.7 89 56.2
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 3.3e-17 91.7 89 62.9
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 4.3e-17 91.3 80 63.8
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 5.6e-17 90.9 80 70.0
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 9.6e-17 90.1 86 58.1
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 9.6e-17 90.1 86 58.1
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 9.6e-17 90.1 93 64.5
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 9.6e-17 90.1 80 62.5
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 9.6e-17 90.1 92 58.7
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.2e-16 89.7 85 58.8
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 1.2e-16 89.7 82 65.9
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 1.6e-16 89.4 79 69.6
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 1.6e-16 89.4 71 67.6
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 2.1e-16 89.0 71 67.6
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 2.8e-16 88.6 76 61.8
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 3.6e-16 88.2 88 53.4
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 3.6e-16 88.2 74 64.9
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 3.6e-16 88.2 73 65.8
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 4.7e-16 87.8 77 61.0
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 6.2e-16 87.4 75 64.0
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 6.2e-16 87.4 86 62.8
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 6.2e-16 87.4 91 62.6
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 8.1e-16 87.0 83 57.8
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 8.1e-16 87.0 83 57.8
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 1.1e-15 86.7 84 56.0
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 1.1e-15 86.7 88 52.3
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 1.1e-15 86.7 84 64.3
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 1.4e-15 86.3 86 55.8
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 1.4e-15 86.3 83 57.8
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.4e-15 86.3 88 67.0
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.4e-15 86.3 71 66.2
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 1.4e-15 86.3 73 68.5
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 1.4e-15 86.3 68 69.1
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 1.8e-15 85.9 73 67.1
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 2.4e-15 85.5 81 65.4
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 2.4e-15 85.5 74 66.2
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 3.1e-15 85.1 76 61.8
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 3.1e-15 85.1 71 64.8
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 3.1e-15 85.1 72 68.1
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 3.1e-15 85.1 84 60.7
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 4.0e-15 84.7 74 66.2
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 5.2e-15 84.3 75 72.0
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 5.2e-15 84.3 75 64.0
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 6.8e-15 84.0 72 66.7
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 6.8e-15 84.0 84 59.5
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 8.9e-15 83.6 76 60.5
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 8.9e-15 83.6 94 62.8
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 1.2e-14 83.2 74 59.5
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 1.2e-14 83.2 74 66.2
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 1.2e-14 83.2 88 56.8
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 1.2e-14 83.2 75 62.7
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 1.2e-14 83.2 87 62.1
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 1.2e-14 83.2 74 63.5
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.5e-14 82.8 75 62.7
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 2.0e-14 82.4 72 65.3
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 2.0e-14 82.4 70 65.7
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.0e-14 82.4 74 68.9
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.0e-14 82.4 74 68.9
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 2.6e-14 82.0 88 59.1
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 3.4e-14 81.6 81 60.5
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 3.4e-14 81.6 73 64.4
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 4.4e-14 81.3 83 57.8
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 4.4e-14 81.3 80 56.2
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 4.4e-14 81.3 90 60.0
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 4.4e-14 81.3 67 65.7
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 4.4e-14 81.3 74 63.5
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 7.6e-14 80.5 83 54.2
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 7.6e-14 80.5 72 61.1
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 7.6e-14 80.5 68 63.2
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 9.9e-14 80.1 80 57.5
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 9.9e-14 80.1 83 59.0
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 2.2e-13 79.0 83 62.7
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 3.8e-13 78.2 67 67.2
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 8.4e-13 77.0 84 59.5
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.1e-12 76.6 69 62.3
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 1.1e-12 76.6 76 57.9
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.4e-12 76.3 87 60.9
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.9e-12 75.9 72 61.1
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 3.2e-12 75.1 77 59.7
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 3.2e-12 75.1 86 57.0
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 3.2e-12 75.1 74 62.2
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 7.1e-12 73.9 86 52.3
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 7.1e-12 73.9 74 64.9
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 9.3e-12 73.6 83 59.0
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 9.3e-12 73.6 72 59.7
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.6e-11 72.8 72 62.5
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 1.6e-11 72.8 67 62.7
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 2.1e-11 72.4 76 56.6
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 3.5e-11 71.6 78 60.3
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 6.0e-11 70.9 80 52.5
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 7.8e-11 70.5 81 60.5
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 7.8e-11 70.5 94 54.3
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 7.8e-11 70.5 94 54.3
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 1.3e-10 69.7 63 63.5
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 2.3e-10 68.9 71 54.9
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 5.1e-10 67.8 78 57.7
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 5.1e-10 67.8 90 46.7
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 5.1e-10 67.8 77 53.2
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 6.6e-10 67.4 78 59.0
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 8.7e-10 67.0 75 49.3
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 1.5e-09 66.2 55 69.1
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 2.5e-09 65.5 59 61.0
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 2.5e-09 65.5 94 45.7
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 2.5e-09 65.5 77 57.1
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 3.3e-09 65.1 82 56.1
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 3.3e-09 65.1 70 54.3
MBI19_g17416_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 4.3e-09 64.7 84 48.8
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 5.6e-09 64.3 59 59.3
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 5.6e-09 64.3 72 51.4
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 7.3e-09 63.9 77 53.2
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 7.3e-09 63.9 77 53.2
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 1.3e-08 63.2 74 52.7
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 1.3e-08 63.2 89 44.9
FAN10G0002 Fragaria x ananassa HOM05D040482 ORTHO05D005453 1.6e-08 62.8 52 71.2
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 2.1e-08 62.4 90 41.1
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 2.1e-08 62.4 67 50.7
FvH4_7g00010 Fragaria vesca HOM05D040482 ORTHO05D005453 2.1e-08 62.4 60 63.3
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.6e-08 61.6 76 53.9
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 3.6e-08 61.6 93 45.2
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 1.1e-07 60.1 66 48.5
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 1.8e-07 59.3 77 44.2
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.8e-07 59.3 64 56.2
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 6.9e-07 57.4 69 50.7
Gorai.011G212200 Gossypium raimondii HOM05D004722 ORTHO05D005453 9.0e-07 57.0 78 51.3
A10p04340 Brassica napus HOM05D000875 ORTHO05D000684 3.4e-06 55.1 54 59.3
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 3.4e-06 55.1 75 46.7
MBI19_g17417_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 4.4e-06 54.7 89 41.6


User provided reference genes

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