Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G019300 Populus trichocarpa HOM05D005110 ORTHO05D006074 1.8e-93 345.9 174 100.0
Sabra09G0012800 Salix brachista HOM05D005110 ORTHO05D006074 1.0e-80 303.5 175 86.9
Duzib150G1383 Durio zibethinus HOM05D005110 ORTHO05D006074 9.4e-58 227.3 176 65.9
Duzib170G1118 Durio zibethinus HOM05D005110 ORTHO05D006074 2.3e-56 222.6 177 63.8
Manes.11G163300 Manihot esculenta HOM05D005110 ORTHO05D006074 3.3e-55 218.8 177 66.7
Dinv22825 Davidia involucrata HOM05D005110 ORTHO05D006074 2.2e-54 216.1 177 63.8
Duzib168G1438 Durio zibethinus HOM05D005110 ORTHO05D006074 2.8e-54 215.7 172 64.5
GSVIVG01036094001 Vitis vinifera HOM05D005110 ORTHO05D006074 6.3e-54 214.5 176 63.6
Thecc.09G280200 Theobroma cacao HOM05D005110 ORTHO05D006074 4.1e-53 211.8 176 61.9
Actinidia37076 Actinidia chinensis HOM05D005110 ORTHO05D006074 1.0e-51 207.2 172 61.6
QL01p011992 Quercus lobata HOM05D005110 ORTHO05D006074 5.0e-51 204.9 177 61.0
Ciclev10029378m.g Citrus clementina HOM05D005110 ORTHO05D006074 6.5e-51 204.5 179 63.1
MD03G1148100 Malus domestica HOM05D005110 ORTHO05D006074 1.4e-50 203.4 177 59.3
MD11G1167600 Malus domestica HOM05D005110 ORTHO05D006074 1.4e-50 203.4 178 60.7
Prupe.6G134300 Prunus persica HOM05D005110 ORTHO05D006074 5.5e-50 201.4 171 62.0
FvH4_3g25370 Fragaria vesca HOM05D005110 ORTHO05D006074 7.2e-50 201.1 168 63.1
FAN21G3897 Fragaria x ananassa HOM05D005110 ORTHO05D006074 7.2e-50 201.1 168 63.1
COL.COLO4_34021 Corchorus olitorius HOM05D005110 ORTHO05D006074 9.4e-50 200.7 176 59.1
Cfa009996 Carpinus fangiana HOM05D005110 ORTHO05D006074 1.2e-49 200.3 180 62.8
Dinv42535 Davidia involucrata HOM05D005110 ORTHO05D006074 1.6e-49 199.9 177 57.6
TWI79G0870 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 1.6e-49 199.9 177 62.7
FAN25G3715 Fragaria x ananassa HOM05D005110 ORTHO05D006074 2.1e-49 199.5 168 63.1
FAN11G1413 Fragaria x ananassa HOM05D005110 ORTHO05D006074 3.6e-49 198.7 168 62.5
Glyma.12G091100 Glycine max HOM05D005110 ORTHO05D006074 6.1e-49 198.0 174 59.8
Hma1.2p1_0587F.1_g184070 Hydrangea macrophylla HOM05D005110 ORTHO05D006074 8.0e-49 197.6 176 58.0
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 8.0e-49 197.6 170 61.8
Glyma.11G182100 Glycine max HOM05D005110 ORTHO05D006074 1.0e-48 197.2 175 61.7
Lalb_Chr03g0028181 Lupinus albus HOM05D005110 ORTHO05D006074 1.0e-48 197.2 174 59.8
Gohir.A05G079700 Gossypium hirsutum HOM05D005110 ORTHO05D006074 3.9e-48 195.3 173 58.4
Gohir.D05G082600 Gossypium hirsutum HOM05D005110 ORTHO05D006074 6.7e-48 194.5 173 57.8
Gorai.009G084200 Gossypium raimondii HOM05D005110 ORTHO05D006074 6.7e-48 194.5 173 57.8
Rhsim01G0204600 Rhododendron simsii HOM05D005110 ORTHO05D006074 2.6e-47 192.6 186 58.1
DCAR_010338 Daucus carota HOM05D005110 ORTHO05D006074 5.7e-47 191.4 177 57.1
CSS0022586 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 7.4e-47 191.0 180 57.8
Cpa.g.sc195.13 Carica papaya HOM05D005110 ORTHO05D006074 7.4e-47 191.0 177 60.5
Phvul.011G095400 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 9.7e-47 190.7 174 59.2
TWI31G0848 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 1.3e-46 190.3 172 61.6
CANSAT54G0919 Cannabis sativa HOM05D005110 ORTHO05D006074 2.2e-46 189.5 168 59.5
Lj3g0002892 Lotus japonicus HOM05D005110 ORTHO05D006074 3.7e-46 188.7 174 57.5
TPR.G17227 Trifolium pratense HOM05D005110 ORTHO05D006074 3.7e-46 188.7 174 57.5
Lalb_Chr01g0004911 Lupinus albus HOM05D005110 ORTHO05D006074 4.8e-46 188.3 174 57.5
CiPaw.14G098700 Carya illinoinensis HOM05D005110 ORTHO05D006074 1.8e-45 186.4 175 56.0
CiPaw.13G134200 Carya illinoinensis HOM05D005110 ORTHO05D006074 2.4e-45 186.0 172 59.3
Atru.chr3.3190 Acer truncatum HOM05D005110 ORTHO05D006074 3.1e-45 185.7 182 60.4
Psat7g142160 Pisum sativum HOM05D005110 ORTHO05D006074 3.1e-45 185.7 174 55.2
arahy.Tifrunner.gnm1.ann1.EYNG7S Arachis hypogaea HOM05D005110 ORTHO05D006074 4.1e-45 185.3 175 59.4
arahy.Tifrunner.gnm1.ann1.XFIF97 Arachis hypogaea HOM05D005110 ORTHO05D006074 9.1e-45 184.1 175 59.4
Lj3g0016581 Lotus japonicus HOM05D005110 ORTHO05D006074 4.5e-44 181.8 177 56.5
Eucgr.B03836 Eucalyptus grandis HOM05D005110 ORTHO05D006074 5.9e-44 181.4 184 53.8
Glyma.13G315400 Glycine max HOM05D005110 ORTHO05D006074 7.7e-44 181.0 176 55.7
VMungo1127G0906 Vigna mungo HOM05D005110 ORTHO05D006074 7.7e-44 181.0 169 58.0
Cc01_g08910 Coffea canephora HOM05D005110 ORTHO05D006074 1.0e-43 180.6 176 55.1
Oeu035569.1 Olea europaea HOM05D005110 ORTHO05D006074 1.7e-43 179.9 171 55.6
Aqoxy4G02728 Aquilegia oxysepala HOM05D005110 ORTHO05D006074 5.0e-43 178.3 173 56.6
Medtr2g086680 Medicago truncatula HOM05D005110 ORTHO05D006074 5.0e-43 178.3 175 55.4
PGR102G3267 Punica granatum HOM05D005110 ORTHO05D006074 8.5e-43 177.6 179 57.5
Sopen06g030680 Solanum pennellii HOM05D005110 ORTHO05D006074 1.5e-42 176.8 179 53.6
Lalb_Chr19g0136401 Lupinus albus HOM05D005110 ORTHO05D006074 2.5e-42 176.0 165 58.8
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 2.5e-42 176.0 179 54.2
vmacro03324 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 2.5e-42 176.0 185 55.7
Actinidia25117 Actinidia chinensis HOM05D005110 ORTHO05D006074 3.2e-42 175.6 181 53.6
VMungo1080G1295 Vigna mungo HOM05D005110 ORTHO05D006074 4.2e-42 175.3 174 52.9
PGSC0003DMG400005884 Solanum tuberosum HOM05D005110 ORTHO05D006074 5.5e-42 174.9 180 52.8
Nn2g14215 Nelumbo nucifera HOM05D005110 ORTHO05D006074 9.4e-42 174.1 173 53.2
Peaxi162Scf00091g00622 Petunia axillaris HOM05D005110 ORTHO05D006074 9.4e-42 174.1 173 56.6
Oeu002365.1 Olea europaea HOM05D005110 ORTHO05D006074 1.6e-41 173.3 179 53.6
Oeu027156.1 Olea europaea HOM05D005110 ORTHO05D006074 3.6e-41 172.2 179 54.2
HanXRQChr01g0024471 Helianthus annuus HOM05D005110 ORTHO05D006074 6.1e-41 171.4 175 53.7
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 6.1e-41 171.4 173 52.6
MBI17_g32417_MAGBIO Magnolia biondii HOM05D005110 ORTHO05D006074 8.0e-41 171.0 175 52.6
CAN.G919.35 Capsicum annuum HOM05D005110 ORTHO05D006074 1.8e-40 169.9 181 53.0
MSTRG.21034 Avicennia marina HOM05D005110 ORTHO05D006074 2.3e-40 169.5 176 51.7
Nitab4.5_0000937g0070 Nicotiana tabacum HOM05D005110 ORTHO05D006074 3.0e-40 169.1 168 54.2
ECA248G3565 Erigeron canadensis HOM05D005110 ORTHO05D006074 4.0e-40 168.7 174 51.1
Psat5g259000 Pisum sativum HOM05D005110 ORTHO05D006074 6.7e-40 167.9 175 52.0
vmacro14345 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 1.2e-39 167.2 191 52.4
Phvul.005G122600 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 2.0e-39 166.4 176 51.1
Rhsim13G0112900 Rhododendron simsii HOM05D005110 ORTHO05D006074 2.0e-39 166.4 185 54.1
MSTRG.18766 Avicennia marina HOM05D005110 ORTHO05D006074 7.5e-39 164.5 177 50.3
SalBow6G3038 Salvia bowleyana HOM05D005110 ORTHO05D006074 7.5e-39 164.5 173 53.8
DCAR_012208 Daucus carota HOM05D005110 ORTHO05D006074 1.3e-38 163.7 178 50.0
Lsat_1_v5_gn_1_59041 Lactuca sativa HOM05D005110 ORTHO05D006074 2.2e-38 162.9 169 51.5
QL01p011973 Quercus lobata HOM05D005110 ORTHO05D006074 2.8e-38 162.5 177 52.5
CSS0002660 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 6.3e-38 161.4 178 50.0
HanXRQChr13g0426031 Helianthus annuus HOM05D005110 ORTHO05D006074 6.3e-38 161.4 177 49.7
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 6.3e-38 161.4 170 51.2
SGA_v2.0_scaffold22G09852 Striga asiatica HOM05D005110 ORTHO05D006074 1.4e-37 160.2 175 49.7
Migut.D02434 Erythranthe guttata HOM05D005110 ORTHO05D006074 2.7e-36 156.0 173 50.9
Sed0010097 Sechium edule HOM05D005110 ORTHO05D006074 1.9e-34 149.8 182 48.9
Sc06g0008710 Simmondsia chinensis HOM05D005110 ORTHO05D006074 4.2e-34 148.7 181 44.2
ClCG01G012070 Citrullus lanatus HOM05D005110 ORTHO05D006074 3.6e-33 145.6 181 45.3
ClCG02G022270 Citrullus lanatus HOM05D005110 ORTHO05D006074 3.6e-33 145.6 183 49.7
CsaV3_1G014930 Cucumis sativus L. HOM05D005110 ORTHO05D006074 1.5e-31 140.2 168 44.0
CsaV3_1G015850 Cucumis sativus L. HOM05D005110 ORTHO05D006074 1.5e-31 140.2 168 44.0
MELO3C004693.2 Cucumis melo HOM05D005110 ORTHO05D006074 2.6e-31 139.4 173 45.1
MELO3C014504.2 Cucumis melo HOM05D005110 ORTHO05D006074 2.2e-30 136.3 161 49.7
CsaV3_6G038400 Cucumis sativus L. HOM05D005110 ORTHO05D006074 2.8e-30 136.0 184 46.2
TAR369G1010 Trochodendron aralioides HOM05D005110 ORTHO05D006074 6.3e-30 134.8 124 60.5
arahy.Tifrunner.gnm1.ann1.NUG06Z Arachis hypogaea HOM05D005110 ORTHO05D006074 8.3e-30 134.4 180 46.7
THA.LOC104800521 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 1.4e-29 133.7 157 49.7
AL4G21340 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 5.4e-29 131.7 168 48.2
CARHR119990 Cardamine hirsuta HOM05D005110 ORTHO05D006074 5.4e-29 131.7 166 45.2
C02p10870 Brassica napus HOM05D005110 ORTHO05D006074 9.1e-29 131.0 159 47.2
Carub.0004s0802 Capsella rubella HOM05D005110 ORTHO05D006074 9.1e-29 131.0 170 47.1
Lj2P968T16 Lonicera japonica HOM05D005110 ORTHO05D006074 1.2e-28 130.6 120 55.0
arahy.Tifrunner.gnm1.ann1.GADS7N Arachis hypogaea HOM05D005110 ORTHO05D006074 1.6e-28 130.2 179 45.8
BolC2t07157H Brassica oleracea HOM05D005110 ORTHO05D006074 3.5e-28 129.0 159 47.2
BraA02t05659Z Brassica rapa HOM05D005110 ORTHO05D006074 5.9e-28 128.3 159 46.5
TAR623G0362 Trochodendron aralioides HOM05D005110 ORTHO05D006074 5.9e-28 128.3 127 53.5
AT5G22430 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 7.7e-28 127.9 166 45.2
Manes.04G002101 Manihot esculenta HOM05D005110 ORTHO05D006074 7.7e-28 127.9 117 57.3
AL6G33450 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 1.3e-27 127.1 166 46.4
BcaB05g22726 Brassica carinata HOM05D005110 ORTHO05D006074 1.3e-27 127.1 166 46.4
AT2G27385 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 1.7e-27 126.7 166 45.2
Sp6g22820 Schrenkiella parvula HOM05D005110 ORTHO05D006074 3.8e-27 125.6 166 44.0
BNapus_Darmor_BZH_scaffold_38p00660 Brassica napus HOM05D005110 ORTHO05D006074 5.0e-27 125.2 166 44.0
Thhalv10002110m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 6.5e-27 124.8 169 43.8
Thhalv10014830m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 6.5e-27 124.8 168 43.5
BcaB08g36432 Brassica carinata HOM05D000477 ORTHO05D006074 8.6e-27 124.4 166 44.0
Carub.0006s2017 Capsella rubella HOM05D005110 ORTHO05D006074 8.6e-27 124.4 171 45.6
BraA07t29533Z Brassica rapa HOM05D005110 ORTHO05D006074 1.5e-26 123.6 169 42.6
A07p18150 Brassica napus HOM05D005110 ORTHO05D006074 2.5e-26 122.9 169 42.6
Hund20930 Selenicereus undatus HOM05D005110 ORTHO05D006074 2.5e-26 122.9 133 50.4
C04p24220 Brassica napus HOM05D005110 ORTHO05D006074 9.5e-26 120.9 169 42.0
BolC4t23920H Brassica oleracea HOM05D005110 ORTHO05D006074 9.5e-26 120.9 169 42.0
BcaB02g10088 Brassica carinata HOM05D005110 ORTHO05D006074 2.8e-25 119.4 169 41.4
CARHR191100 Cardamine hirsuta HOM05D005110 ORTHO05D006074 2.8e-25 119.4 166 45.8
BcaC02g10869 Brassica carinata HOM05D005110 ORTHO05D006074 3.6e-25 119.0 169 41.4
Sp4g10180 Schrenkiella parvula HOM05D005110 ORTHO05D006074 6.1e-25 118.2 159 41.5
Aa31LG1G13130 Aethionema arabicum HOM05D005110 ORTHO05D006074 1.4e-24 117.1 171 44.4
THA.LOC104810920 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 1.8e-24 116.7 168 41.1
MSTRG.17701 Avicennia marina HOM05D005110 ORTHO05D006074 4.0e-24 115.5 170 41.2
BcaC03g13883 Brassica carinata HOM05D005110 ORTHO05D006074 1.3e-22 110.5 135 46.7
Haze_23356 Corylus avellana HOM05D005110 ORTHO05D006074 1.8e-21 106.7 102 59.8
HPP92_011908 Vanilla planifolia HOM05D005110 ORTHO05D006074 1.5e-18 97.1 117 47.9
Actinidia35470 Actinidia chinensis HOM05D005110 ORTHO05D006074 1.6e-17 93.6 91 51.6
ATR0580G107 Amborella trichopoda HOM05D005110 ORTHO05D006074 2.8e-17 92.8 182 35.2
HPP92_005471 Vanilla planifolia HOM05D005110 ORTHO05D006074 1.8e-16 90.1 194 33.5
unitig_746.g26607 Utricularia gibba HOM05D005110 ORTHO05D006074 4.0e-16 89.0 163 35.6
vmacro14354 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 1.2e-15 87.4 115 48.7
BolC9t58287H Brassica oleracea HOM05D005110 ORTHO05D006074 1.0e-11 74.3 168 33.9
C09p54160 Brassica napus HOM05D005110 ORTHO05D006074 1.1e-10 70.9 166 33.1
Zm00001eb242880 Zea mays HOM05D005110 ORTHO05D006074 1.5e-10 70.5 207 29.5
TPR.G4458 Trifolium pratense HOM05D005110 ORTHO05D006074 3.3e-10 69.3 68 54.4


User provided reference genes

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