Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G008300 Populus trichocarpa HOM05D007861 ORTHO05D007271 1.3e-54 216.1 105 100.0
Potri.004G213900 Populus trichocarpa HOM05D007861 ORTHO05D007271 2.3e-35 152.1 105 78.1
Sabra09G0004800 Salix brachista HOM05D007861 ORTHO05D007271 3.0e-35 151.8 102 77.5
Sabra04G0145100 Salix brachista HOM05D007861 ORTHO05D007271 3.1e-24 115.2 80 71.2
Manes.11G150200 Manihot esculenta HOM05D007861 ORTHO05D007271 1.8e-19 99.4 98 51.0
Phvul.005G132100 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 5.4e-16 87.8 100 54.0
CiPaw.13G118000 Carya illinoinensis HOM05D007861 ORTHO05D007271 1.2e-15 86.7 96 47.9
Glyma.13G323700 Glycine max HOM05D007861 ORTHO05D007271 2.7e-15 85.5 101 54.5
Glyma.12G177000 Glycine max HOM05D007861 ORTHO05D007271 4.5e-15 84.7 101 54.5
TPR.G11489 Trifolium pratense HOM05D007861 ORTHO05D007271 5.9e-15 84.3 100 51.0
Haze_23757 Corylus avellana HOM05D007861 ORTHO05D007271 7.7e-15 84.0 90 56.7
Lalb_Chr14g0374511 Lupinus albus HOM05D007861 ORTHO05D007271 1.0e-14 83.6 103 50.5
Glyma.12G079100 Glycine max HOM05D007861 ORTHO05D007271 2.2e-14 82.4 107 49.5
Gohir.D08G217100 Gossypium hirsutum HOM05D007861 ORTHO05D007271 2.9e-14 82.0 106 50.9
Gorai.004G230800 Gossypium raimondii HOM05D007861 ORTHO05D007271 2.9e-14 82.0 106 50.9
Medtr2g095310 Medicago truncatula HOM05D007861 ORTHO05D007271 2.9e-14 82.0 100 51.0
Cfa010349 Carpinus fangiana HOM05D007861 ORTHO05D007271 3.8e-14 81.6 65 64.6
Lalb_Chr24g0394821 Lupinus albus HOM05D007861 ORTHO05D007271 5.0e-14 81.3 103 50.5
Manes.04G015900 Manihot esculenta HOM05D007861 ORTHO05D007271 5.0e-14 81.3 95 53.7
Gohir.A08G200000 Gossypium hirsutum HOM05D007861 ORTHO05D007271 6.5e-14 80.9 100 50.0
Atru.chr3.3557 Acer truncatum HOM05D007861 ORTHO05D007271 1.5e-13 79.7 95 50.5
FAN21G2212 Fragaria x ananassa HOM05D007861 ORTHO05D007271 3.2e-13 78.6 105 48.6
Lj3g0021425 Lotus japonicus HOM05D007861 ORTHO05D007271 4.2e-13 78.2 102 52.0
FAN16G3504 Fragaria x ananassa HOM05D007861 ORTHO05D007271 5.5e-13 77.8 105 47.6
TPR.G6167 Trifolium pratense HOM05D007861 ORTHO05D007271 7.2e-13 77.4 111 45.9
FvH4_3g31180 Fragaria vesca HOM05D007861 ORTHO05D007271 2.7e-12 75.5 105 42.9
FAN11G3777 Fragaria x ananassa HOM05D007861 ORTHO05D007271 2.7e-12 75.5 105 42.9
FAN25G1997 Fragaria x ananassa HOM05D007861 ORTHO05D007271 2.7e-12 75.5 105 42.9
Lj3g0027314 Lotus japonicus HOM05D007861 ORTHO05D007271 2.7e-12 75.5 103 43.7
Ciclev10029681m.g Citrus clementina HOM05D007861 ORTHO05D007271 3.6e-12 75.1 87 47.1
Cpa.g.sc65.32 Carica papaya HOM05D007861 ORTHO05D007271 4.7e-12 74.7 104 50.0
CiPaw.14G086500 Carya illinoinensis HOM05D007861 ORTHO05D007271 4.7e-12 74.7 99 50.5
Glyma.11G195000 Glycine max HOM05D007861 ORTHO05D007271 6.1e-12 74.3 104 45.2
Thecc.09G347700 Theobroma cacao HOM05D007861 ORTHO05D007271 6.1e-12 74.3 88 51.1
Prupe.6G107700 Prunus persica HOM05D007861 ORTHO05D007271 8.0e-12 73.9 103 43.7
RcHm_v2.0_Chr5g0057831 Rosa chinensis HOM05D007861 ORTHO05D007271 1.0e-11 73.6 105 42.9
VMungo1127G1395 Vigna mungo HOM05D007861 ORTHO05D007271 1.0e-11 73.6 86 51.2
Lalb_Chr03g0027611 Lupinus albus HOM05D007861 ORTHO05D007271 1.4e-11 73.2 86 50.0
Gohir.A05G106400 Gossypium hirsutum HOM05D007861 ORTHO05D007271 1.8e-11 72.8 76 53.9
arahy.Tifrunner.gnm1.ann1.ALS1H8 Arachis hypogaea HOM05D007861 ORTHO05D007271 3.0e-11 72.0 93 47.3
Sed0017526 Sechium edule HOM05D007861 ORTHO05D007271 6.8e-11 70.9 99 40.4
Medtr4g057830 Medicago truncatula HOM05D007861 ORTHO05D007271 8.8e-11 70.5 78 48.7
Lalb_Chr01g0004491 Lupinus albus HOM05D007861 ORTHO05D007271 1.5e-10 69.7 100 44.0
COL.COLO4_34705 Corchorus olitorius HOM05D007861 ORTHO05D007271 2.0e-10 69.3 104 47.1
MELO3C026916.2 Cucumis melo HOM05D007861 ORTHO05D007271 9.8e-10 67.0 94 42.6
Phvul.011G083700 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 9.8e-10 67.0 101 44.6
ClCG02G021400 Citrullus lanatus HOM05D007861 ORTHO05D007271 1.3e-09 66.6 73 47.9
Gohir.D05G106401 Gossypium hirsutum HOM05D007861 ORTHO05D007271 1.3e-09 66.6 89 46.1
Gorai.009G110500 Gossypium raimondii HOM05D007861 ORTHO05D007271 1.3e-09 66.6 89 46.1
Nn2g13767 Nelumbo nucifera HOM05D007861 ORTHO05D007271 1.3e-09 66.6 88 46.6
MSTRG.21100 Avicennia marina HOM05D007861 ORTHO05D007271 2.2e-09 65.9 90 43.3
Sed0005749 Sechium edule HOM05D007861 ORTHO05D007271 2.2e-09 65.9 94 42.6
DCAR_018786 Daucus carota HOM05D007861 ORTHO05D007271 2.8e-09 65.5 67 52.2
CsaV3_6G014180 Cucumis sativus L. HOM05D007861 ORTHO05D007271 6.3e-09 64.3 93 41.9
TAR633G0087 Trochodendron aralioides HOM05D007861 ORTHO05D007271 8.3e-09 63.9 81 49.4
Nn2g11569 Nelumbo nucifera HOM05D007861 ORTHO05D007271 7.0e-08 60.8 89 46.1
Rhsim03G0116500 Rhododendron simsii HOM05D009695 ORTHO05D007271 2.7e-07 58.9 53 50.9
Eucgr.J00896 Eucalyptus grandis HOM05D007861 ORTHO05D007271 4.5e-07 58.2 71 43.7
CiPaw.01G269700 Carya illinoinensis HOM05D007861 ORTHO05D007271 1.3e-06 56.6 86 43.0
Migut.F01962 Erythranthe guttata HOM05D007861 ORTHO05D007271 2.9e-06 55.5 73 42.5
Gohir.A05G294400 Gossypium hirsutum HOM05D009695 ORTHO05D007271 2.9e-06 55.5 91 39.6
Gohir.D05G294900 Gossypium hirsutum HOM05D009695 ORTHO05D007271 3.8e-06 55.1 91 42.9
Potri.010G226200 Populus trichocarpa HOM05D007861 ORTHO05D007271 3.8e-06 55.1 93 35.5
Lsat_1_v5_gn_6_43600 Lactuca sativa HOM05D007861 ORTHO05D007271 5.0e-06 54.7 113 33.6
Hma1.2p1_0569F.1_g180260 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 6.6e-06 54.3 64 46.9
BraA04t17695Z Brassica rapa HOM05D014739 ORTHO05D007271 8.6e-06 53.9 90 42.2


User provided reference genes

Program Settings