Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 0.0e+00 1080.5 563 100.0
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 1.7e-289 998.8 582 90.5
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 3.1e-235 818.5 564 76.4
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 3.7e-220 768.5 570 73.9
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 5.8e-218 761.1 565 72.9
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 6.0e-215 751.1 569 71.0
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 1.2e-210 736.9 565 70.4
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 2.0e-210 736.1 563 70.3
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 2.6e-210 735.7 570 69.5
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 1.7e-209 733.0 569 68.7
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 6.5e-209 731.1 569 68.7
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 1.1e-208 730.3 566 69.8
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 4.2e-208 728.4 566 69.6
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 9.3e-208 727.2 562 69.0
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 1.2e-207 726.9 564 69.9
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 6.0e-207 724.5 567 70.4
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 7.9e-207 724.2 565 68.3
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 1.3e-206 723.4 569 67.7
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 1.8e-206 723.0 561 68.6
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 3.0e-206 722.2 561 69.5
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 6.7e-206 721.1 562 69.4
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 8.7e-206 720.7 569 67.5
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 8.7e-206 720.7 566 69.4
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 3.7e-204 715.3 568 68.3
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 6.3e-204 714.5 558 68.1
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 1.1e-203 713.8 576 68.1
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 1.4e-203 713.4 562 66.9
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 2.4e-203 712.6 576 67.7
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 3.1e-203 712.2 577 67.4
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 5.0e-201 704.9 561 67.4
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 1.4e-200 703.4 564 67.6
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 4.2e-200 701.8 566 68.6
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 9.4e-200 700.7 557 67.7
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 6.1e-199 698.0 573 67.5
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 7.9e-199 697.6 603 65.0
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.0e-198 697.2 573 67.4
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.5e-197 693.3 575 67.5
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 1.5e-197 693.3 567 67.5
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.5e-197 692.6 573 67.4
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 1.7e-196 689.9 555 68.1
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 1.1e-195 687.2 566 66.3
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 3.4e-194 682.2 561 65.4
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 4.5e-194 681.8 566 65.2
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 1.7e-193 679.9 562 64.9
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 2.2e-193 679.5 529 70.3
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 2.9e-193 679.1 571 64.8
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 3.8e-193 678.7 566 65.5
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 3.8e-193 678.7 566 65.9
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 6.5e-193 677.9 568 64.6
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 8.5e-193 677.6 562 65.7
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 1.1e-192 677.2 575 63.8
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 2.1e-191 672.9 564 65.2
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 3.6e-191 672.2 564 66.7
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 6.1e-191 671.4 569 63.4
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 7.9e-191 671.0 568 63.6
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 1.8e-190 669.8 568 65.3
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 3.0e-190 669.1 566 63.4
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 3.0e-190 669.1 561 65.8
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 3.0e-190 669.1 577 63.4
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 3.0e-190 669.1 565 64.4
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 3.0e-190 669.1 562 63.7
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 8.8e-190 667.5 589 61.5
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 1.5e-189 666.8 569 62.7
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 1.7e-188 663.3 573 62.7
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 4.8e-188 661.8 502 70.1
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 1.4e-187 660.2 563 63.1
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 2.4e-187 659.4 499 68.3
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 4.1e-187 658.7 574 62.2
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 5.3e-187 658.3 563 63.1
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 5.3e-187 658.3 563 63.1
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 5.3e-187 658.3 592 62.8
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 5.3e-187 658.3 570 63.5
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 9.1e-187 657.5 574 62.0
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 1.5e-186 656.8 568 61.8
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 1.0e-185 654.1 570 61.6
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 1.7e-185 653.3 569 63.6
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 3.8e-185 652.1 580 61.9
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 3.2e-184 649.0 566 62.4
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 7.2e-184 647.9 572 62.9
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 1.5e-181 640.2 558 62.4
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 1.7e-180 636.7 590 61.2
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 3.7e-180 635.6 559 62.3
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 1.2e-178 630.6 579 60.8
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 6.5e-177 624.8 562 61.2
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 2.5e-176 622.9 583 60.4
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 3.6e-175 619.0 480 68.8
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 1.4e-174 617.1 600 58.5
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 3.0e-174 615.9 541 64.5
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 4.0e-174 615.5 562 60.5
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 1.5e-168 597.0 566 60.1
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 7.2e-168 594.7 475 66.1
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 1.2e-167 594.0 649 55.0
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 1.6e-167 593.6 502 64.1
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 2.6e-165 586.3 558 59.1
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 4.8e-164 582.0 585 57.3
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 6.3e-164 581.6 461 68.8
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 3.1e-163 579.3 515 61.0
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 1.2e-159 567.4 480 63.8
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 2.8e-159 566.2 505 61.6
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 2.3e-150 536.6 565 57.7
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 3.5e-146 522.7 536 53.9
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 1.3e-145 520.8 573 54.6
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.5e-144 517.3 349 75.4
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 2.3e-142 510.0 582 53.3
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 1.3e-137 494.2 349 71.6
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 3.0e-137 493.0 577 50.1
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 1.6e-135 487.3 478 56.5
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 6.8e-134 481.9 340 71.2
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 1.1e-131 474.6 511 51.3
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 5.1e-129 465.7 403 64.0
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 3.5e-122 443.0 517 52.0
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 2.6e-117 426.8 361 62.9
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 2.7e-114 416.8 480 52.1
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 5.1e-113 412.5 243 86.8
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 1.9e-112 410.6 242 84.7
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 1.9e-112 410.6 242 84.7
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 1.1e-102 378.3 234 80.3
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 1.4e-99 367.9 387 55.8
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 5.5e-99 365.9 424 54.5
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 1.3e-97 361.3 424 51.2
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.5e-96 357.8 282 63.1
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 4.1e-94 349.7 192 90.1
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 6.5e-92 342.4 412 52.2
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 5.7e-88 329.3 403 50.1
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 2.6e-85 320.5 315 54.9
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.3e-84 318.2 338 52.7
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 3.9e-81 306.6 579 36.3
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 8.2e-79 298.9 159 89.3
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 9.1e-78 295.4 558 36.2
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 8.8e-73 278.9 372 48.4
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 6.3e-63 246.1 143 84.6
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 6.3e-63 246.1 461 39.0
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.2e-61 241.9 143 86.7
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.2e-60 237.7 143 84.6
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 8.5e-60 235.7 198 66.2
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 8.0e-58 229.2 134 85.8
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 5.2e-57 226.5 128 89.8
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 8.5e-52 209.1 228 53.9
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 7.0e-46 189.5 555 29.9
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 1.1e-38 165.6 503 29.2
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.7e-36 158.3 88 90.9
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.0e-33 149.1 92 82.6
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 7.8e-29 132.9 158 50.6
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 3.7e-23 114.0 132 50.8
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 3.7e-23 114.0 187 41.7
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 4.1e-22 110.5 536 25.9
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 8.6e-20 102.8 208 39.4
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 4.3e-19 100.5 252 30.6
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 1.2e-18 99.0 257 30.4
MD00G1165500 Malus domestica HOM05D004776 ORTHO05D005777 6.2e-18 96.7 85 64.7
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.8e-17 95.1 52 90.4
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 7.6e-16 89.7 121 47.1
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 3.7e-15 87.4 45 88.9
Peaxi162Scf00351g00526 Petunia axillaris HOM05D004776 ORTHO05D005777 3.4e-08 64.3 318 27.0
PRCOL_00000088 Prasinoderma coloniale HOM05D004776 ORTHO05D005777 1.1e-06 59.3 199 28.1


User provided reference genes

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