Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 2.3e-148 528.9 266 100.0
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 2.3e-140 502.3 266 95.1
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 4.5e-104 381.7 273 71.1
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 9.2e-97 357.5 274 67.9
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 2.7e-96 355.9 279 67.4
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.9e-94 349.7 273 68.1
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 5.6e-94 348.2 270 66.3
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 1.6e-93 346.7 272 66.5
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 4.7e-93 345.1 272 66.5
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 1.1e-92 344.0 275 66.9
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 1.5e-91 340.1 276 66.7
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 4.4e-91 338.6 281 63.7
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 5.8e-91 338.2 273 65.6
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 2.2e-90 336.3 273 63.7
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 2.9e-90 335.9 232 73.7
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 1.1e-89 334.0 272 66.2
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 2.0e-88 329.7 232 72.4
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 1.3e-87 327.0 271 64.9
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 1.7e-87 326.6 270 64.8
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 1.7e-87 326.6 240 68.8
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 2.3e-87 326.2 273 63.4
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 3.0e-87 325.9 278 60.4
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 3.9e-87 325.5 271 60.1
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 8.6e-87 324.3 228 71.1
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 1.9e-86 323.2 278 60.1
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 3.3e-86 322.4 236 68.2
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 4.3e-86 322.0 276 62.3
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 9.5e-86 320.9 230 69.6
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 1.2e-85 320.5 242 66.5
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 1.6e-85 320.1 227 70.5
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 2.1e-85 319.7 240 66.2
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 2.8e-85 319.3 259 64.1
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 1.1e-84 317.4 231 68.0
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 1.1e-84 317.4 230 66.5
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 1.1e-84 317.4 224 70.1
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 1.8e-84 316.6 272 61.0
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 2.3e-84 316.2 274 62.8
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 3.1e-84 315.8 239 66.9
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 5.2e-84 315.1 265 64.5
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 1.2e-83 313.9 272 61.4
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 1.2e-83 313.9 276 60.1
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 1.2e-83 313.9 227 68.7
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 2.6e-83 312.8 237 66.7
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 2.6e-83 312.8 231 67.1
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.4e-83 312.4 276 59.8
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 7.5e-83 311.2 231 68.0
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 3.7e-82 308.9 277 59.9
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 6.4e-82 308.1 229 67.7
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 6.4e-82 308.1 231 64.9
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 1.4e-81 307.0 228 66.2
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 1.9e-81 306.6 232 65.9
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 1.9e-81 306.6 234 64.5
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 3.2e-81 305.8 234 63.7
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 3.0e-79 299.3 223 64.1
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 3.0e-79 299.3 278 57.2
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 5.1e-79 298.5 276 59.4
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 6.6e-79 298.1 272 58.1
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 1.5e-78 297.0 272 57.4
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 3.3e-78 295.8 276 56.9
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 3.3e-78 295.8 206 71.8
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 4.3e-78 295.4 278 56.8
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 4.3e-78 295.4 232 62.5
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 9.5e-78 294.3 226 63.7
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 1.6e-77 293.5 278 55.8
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 4.7e-77 292.0 226 62.8
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 8.1e-77 291.2 226 62.8
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 1.1e-76 290.8 264 58.3
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 1.1e-76 290.8 278 55.0
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 1.1e-76 290.8 278 55.0
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 3.1e-76 289.3 226 63.7
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 4.0e-76 288.9 277 57.4
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 5.2e-76 288.5 276 56.2
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 6.8e-76 288.1 231 63.6
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 4.4e-75 285.4 271 53.9
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 5.8e-75 285.0 240 61.2
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 9.9e-75 284.3 270 56.7
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 9.9e-75 284.3 270 56.7
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 2.9e-74 282.7 275 53.5
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 3.8e-74 282.3 240 60.8
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 6.4e-74 281.6 270 54.4
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 1.4e-73 280.4 224 65.2
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.9e-73 280.0 206 67.5
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 5.4e-73 278.5 273 55.3
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 1.2e-72 277.3 198 69.7
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 3.5e-72 275.8 198 70.7
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 2.4e-68 263.1 185 71.4
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 9.0e-68 261.2 218 60.1
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 9.0e-68 261.2 223 63.7
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 1.2e-67 260.8 262 51.9
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 7.6e-67 258.1 273 54.6
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 1.3e-66 257.3 298 49.0
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 6.4e-66 255.0 240 55.8
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 1.1e-65 254.2 241 55.6
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 9.3e-65 251.1 229 55.9
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 6.0e-64 248.4 233 54.1
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 7.8e-64 248.1 228 54.4
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.6e-62 241.1 186 65.1
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 1.8e-60 236.9 248 50.0
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.3e-58 230.7 180 64.4
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 2.9e-58 229.6 229 54.1
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 4.5e-51 205.7 159 65.4
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.4e-49 199.9 234 50.9
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.1e-47 192.2 215 54.0
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 1.9e-46 190.3 124 74.2
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 1.3e-42 177.6 122 71.3
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 1.7e-42 177.2 136 64.7
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 6.3e-37 158.7 211 39.3
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.5e-33 146.7 173 48.6
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 6.1e-32 142.1 155 52.3
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 3.9e-31 139.4 124 58.1
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 3.3e-30 136.3 115 59.1
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.7e-29 132.9 119 60.5
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.9e-27 125.6 246 38.6
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.8e-23 114.0 70 72.9
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 1.7e-21 107.5 86 64.0
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.4e-20 103.6 80 63.8
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.1e-20 101.7 103 52.4
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.7e-18 97.4 74 64.9
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.2e-18 97.1 136 45.6
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 6.5e-18 95.5 82 52.4
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 8.5e-18 95.1 92 52.2
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.7e-16 89.4 122 45.1
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 3.3e-14 83.2 109 48.6
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 1.7e-13 80.9 91 45.1
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.8e-13 80.1 67 56.7
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.2e-13 78.6 102 46.1
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 1.6e-11 74.3 55 56.4
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.2e-10 70.5 88 47.7
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 1.9e-09 67.4 132 32.6
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 1.9e-09 67.4 46 60.9
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 1.9e-09 67.4 46 60.9
Zm00001eb228200 Zea mays HOM05D005360 ORTHO05D006501 1.6e-08 64.3 53 50.9
Zm00001eb229280 Zea mays HOM05D005360 ORTHO05D006501 1.6e-08 64.3 53 50.9
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.7e-08 63.5 87 42.5
Gohir.A01G162600 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.0e-08 62.0 133 31.6
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 1.4e-07 61.2 51 60.8


User provided reference genes

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