Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.0e-68 262.3 134 100.0
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 5.7e-47 191.0 114 88.6
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 6.4e-38 161.0 100 85.0
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 8.3e-38 160.6 100 84.0
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.7e-36 155.6 114 72.8
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.9e-34 149.4 98 84.7
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 4.0e-32 141.7 115 67.0
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 5.2e-32 141.4 115 67.8
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 5.2e-32 141.4 115 64.3
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 8.9e-32 140.6 133 63.2
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 2.6e-31 139.0 115 63.5
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 2.6e-31 139.0 115 65.2
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 5.8e-31 137.9 133 55.6
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 1.3e-30 136.7 115 65.2
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 4.9e-30 134.8 116 62.1
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 1.9e-29 132.9 117 62.4
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 1.9e-29 132.9 117 62.4
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 3.2e-29 132.1 115 60.9
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 4.1e-29 131.7 115 60.9
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 5.4e-29 131.3 115 63.5
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.6e-28 129.8 115 59.1
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 3.5e-28 128.6 113 61.1
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 4.6e-28 128.3 115 58.3
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 4.6e-28 128.3 115 61.7
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 7.8e-28 127.5 115 58.3
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.0e-27 127.1 115 59.1
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 1.0e-27 127.1 114 58.8
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 1.0e-27 127.1 114 57.9
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.7e-27 126.3 115 57.4
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.3e-27 125.9 115 56.5
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 3.9e-27 125.2 114 57.9
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 4.3e-26 121.7 115 60.0
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 4.3e-26 121.7 116 56.0
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 5.6e-26 121.3 116 54.3
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 5.6e-26 121.3 115 57.4
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 5.6e-26 121.3 120 53.3
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.6e-25 119.8 115 57.4
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 4.7e-25 118.2 113 54.9
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 4.7e-25 118.2 115 55.7
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 1.4e-24 116.7 116 54.3
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 1.8e-24 116.3 115 56.5
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 5.2e-24 114.8 119 53.8
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 5.2e-24 114.8 120 51.7
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 5.2e-24 114.8 118 55.9
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 8.9e-24 114.0 132 50.8
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 1.3e-22 110.2 119 52.1
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 2.2e-22 109.4 117 53.8
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 2.2e-22 109.4 115 55.7
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 2.9e-22 109.0 112 51.8
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 6.4e-22 107.8 116 50.9
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 6.4e-22 107.8 119 51.3
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 1.1e-21 107.1 118 50.0
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 1.4e-21 106.7 119 51.3
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 1.4e-21 106.7 119 51.3
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 3.2e-21 105.5 119 50.4
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 3.2e-21 105.5 115 49.6
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 3.2e-21 105.5 116 51.7
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 4.1e-21 105.1 116 50.9
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 4.1e-21 105.1 115 50.4
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 4.1e-21 105.1 119 50.4
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 5.4e-21 104.8 119 50.4
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 5.4e-21 104.8 119 50.4
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 5.4e-21 104.8 119 49.6
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 5.4e-21 104.8 119 50.4
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 5.4e-21 104.8 118 50.0
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 7.1e-21 104.4 119 49.6
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 7.1e-21 104.4 119 49.6
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 7.1e-21 104.4 114 47.4
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 9.2e-21 104.0 117 51.3
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 9.2e-21 104.0 119 48.7
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 1.2e-20 103.6 116 45.7
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 1.2e-20 103.6 119 50.4
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 1.2e-20 103.6 119 50.4
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 1.2e-20 103.6 119 50.4
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 1.2e-20 103.6 115 50.4
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 1.2e-20 103.6 118 49.2
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 1.6e-20 103.2 115 52.2
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 1.6e-20 103.2 115 52.2
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 1.6e-20 103.2 118 48.3
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.7e-20 102.4 119 49.6
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 2.7e-20 102.4 119 49.6
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 2.7e-20 102.4 120 47.5
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 2.7e-20 102.4 118 49.2
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 2.7e-20 102.4 112 50.9
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 2.7e-20 102.4 118 48.3
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 2.7e-20 102.4 115 50.4
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 3.5e-20 102.1 116 48.3
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 3.5e-20 102.1 116 47.4
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 6.0e-20 101.3 120 46.7
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 7.8e-20 100.9 119 48.7
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 7.8e-20 100.9 119 48.7
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 7.8e-20 100.9 119 48.7
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 7.8e-20 100.9 119 48.7
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 1.0e-19 100.5 119 48.7
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 1.0e-19 100.5 119 48.7
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 1.0e-19 100.5 114 46.5
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 1.3e-19 100.1 119 47.9
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 1.3e-19 100.1 119 47.9
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 1.3e-19 100.1 119 47.9
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 1.3e-19 100.1 119 47.9
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 1.3e-19 100.1 114 43.9
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 1.3e-19 100.1 114 49.1
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 1.7e-19 99.8 118 48.3
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 2.3e-19 99.4 115 50.4
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 5.1e-19 98.2 118 48.3
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 5.1e-19 98.2 113 49.6
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 5.1e-19 98.2 115 50.4
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 8.6e-19 97.4 119 47.9
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 8.6e-19 97.4 154 40.3
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 8.6e-19 97.4 89 57.3
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.1e-18 97.1 111 51.4
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 1.5e-18 96.7 115 47.8
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 1.9e-18 96.3 115 49.6
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 3.3e-18 95.5 118 41.5
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 5.6e-18 94.7 112 43.8
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 9.5e-18 94.0 113 47.8
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 9.5e-18 94.0 112 46.4
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 1.6e-17 93.2 118 42.4
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 2.8e-17 92.4 145 41.4
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 4.7e-17 91.7 115 44.3
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 6.2e-17 91.3 151 39.1
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 6.2e-17 91.3 118 41.5
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 1.4e-16 90.1 119 42.9
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 1.4e-16 90.1 119 42.9
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.4e-16 90.1 112 47.3
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 1.8e-16 89.7 116 47.4
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 3.1e-16 89.0 118 41.5
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 5.2e-16 88.2 115 44.3
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 5.2e-16 88.2 115 41.7
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 1.2e-15 87.0 87 51.7
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 2.6e-15 85.9 115 42.6
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 7.6e-15 84.3 118 38.1
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 1.7e-14 83.2 119 40.3
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 2.2e-14 82.8 115 40.9
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 2.9e-14 82.4 112 42.0
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 2.4e-13 79.3 120 39.2
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 3.2e-13 79.0 103 48.5
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 3.2e-13 79.0 103 48.5
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 4.1e-13 78.6 119 36.1
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.2e-12 77.0 119 37.8
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 7.8e-12 74.3 56 55.4
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 1.0e-11 73.9 120 36.7
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 1.1e-10 70.5 92 40.2
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 5.6e-10 68.2 80 40.0
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 2.8e-09 65.9 110 36.4
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 2.8e-09 65.9 82 51.2
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 4.7e-09 65.1 104 39.4
Medtr1g055145 Medicago truncatula HOM05D004300 ORTHO05D005171 4.0e-08 62.0 61 49.2


User provided reference genes

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