Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G221000 Populus trichocarpa HOM05D006680 ORTHO05D008206 3.8e-61 238.0 123 100.0
Potri.010G013100 Populus trichocarpa HOM05D006680 ORTHO05D008206 1.1e-52 209.9 124 86.3
Sabra10G0008200 Salix brachista HOM05D006680 ORTHO05D008206 1.5e-49 199.5 124 83.9
Ciclev10006049m.g Citrus clementina HOM05D006680 ORTHO05D008206 1.1e-47 193.4 117 84.6
Manes.15G011600 Manihot esculenta HOM05D006680 ORTHO05D008206 3.1e-47 191.8 123 79.7
TWI09G0327 Tripterygium wilfordii HOM05D006680 ORTHO05D008206 1.5e-46 189.5 114 83.3
Cpa.g.sc16.184 Carica papaya HOM05D006680 ORTHO05D008206 2.6e-46 188.7 120 80.0
THA.LOC104818922 Tarenaya hassleriana HOM05D006680 ORTHO05D008206 4.5e-46 188.0 123 81.3
Gohir.A10G164900 Gossypium hirsutum HOM05D006680 ORTHO05D008206 7.6e-46 187.2 117 82.1
Gohir.D10G171100 Gossypium hirsutum HOM05D006680 ORTHO05D008206 7.6e-46 187.2 117 82.1
Gorai.011G191100 Gossypium raimondii HOM05D006680 ORTHO05D008206 7.6e-46 187.2 117 82.1
Atru.chr4.2870 Acer truncatum HOM05D006680 ORTHO05D008206 1.3e-45 186.4 120 78.3
Duzib151G0306 Durio zibethinus HOM05D006680 ORTHO05D008206 1.3e-45 186.4 124 81.5
Thecc.04G286300 Theobroma cacao HOM05D006680 ORTHO05D008206 1.3e-45 186.4 110 86.4
Gohir.D09G239200 Gossypium hirsutum HOM05D006680 ORTHO05D008206 1.7e-45 186.0 123 76.4
Gorai.006G261900 Gossypium raimondii HOM05D006680 ORTHO05D008206 2.9e-45 185.3 123 76.4
Manes.03G196700 Manihot esculenta HOM05D006680 ORTHO05D008206 1.1e-44 183.3 114 82.5
Gohir.A09G238300 Gossypium hirsutum HOM05D006680 ORTHO05D008206 2.4e-44 182.2 123 74.8
BraA05t22848Z Brassica rapa HOM05D006680 ORTHO05D008206 4.2e-44 181.4 124 77.4
ClCG00G005610 Citrullus lanatus HOM05D006680 ORTHO05D008206 5.4e-44 181.0 123 75.6
A03p34950 Brassica napus HOM05D006680 ORTHO05D008206 7.1e-44 180.6 111 83.8
C03p42530 Brassica napus HOM05D006680 ORTHO05D008206 7.1e-44 180.6 111 83.8
BolC3t16523H Brassica oleracea HOM05D006680 ORTHO05D008206 7.1e-44 180.6 111 83.8
BraA03t12675Z Brassica rapa HOM05D006680 ORTHO05D008206 7.1e-44 180.6 111 83.8
Duzib212G0294 Durio zibethinus HOM05D006680 ORTHO05D008206 2.1e-43 179.1 118 80.5
MD13G1167200 Malus domestica HOM05D006680 ORTHO05D008206 2.1e-43 179.1 112 79.5
A05p41250 Brassica napus HOM05D006680 ORTHO05D008206 1.0e-42 176.8 111 82.9
FvH4_4g18340 Fragaria vesca HOM05D006680 ORTHO05D008206 1.3e-42 176.4 116 73.3
RcHm_v2.0_Chr4g0422811 Rosa chinensis HOM05D006680 ORTHO05D008206 1.3e-42 176.4 116 75.0
FAN07G2082 Fragaria x ananassa HOM05D006680 ORTHO05D008206 1.8e-42 176.0 116 73.3
FAN12G3601 Fragaria x ananassa HOM05D006680 ORTHO05D008206 1.8e-42 176.0 116 73.3
FAN17G1034 Fragaria x ananassa HOM05D006680 ORTHO05D008206 1.8e-42 176.0 116 73.3
Cc03_g01760 Coffea canephora HOM05D006680 ORTHO05D008206 2.3e-42 175.6 123 74.0
VMungo1215G2846 Vigna mungo HOM05D006680 ORTHO05D008206 2.3e-42 175.6 121 76.9
BcaC05g29822 Brassica carinata HOM05D006680 ORTHO05D008206 3.0e-42 175.3 112 83.0
BolC5t34701H Brassica oleracea HOM05D006680 ORTHO05D008206 3.0e-42 175.3 112 83.0
CAN.G129.31 Capsicum annuum HOM05D006680 ORTHO05D008206 3.0e-42 175.3 123 74.0
Nitab4.5_0002761g0070 Nicotiana tabacum HOM05D006680 ORTHO05D008206 3.0e-42 175.3 117 75.2
Prupe.1G134500 Prunus persica HOM05D006680 ORTHO05D008206 3.9e-42 174.9 116 76.7
Ca_21488_v3 Cicer arietinum L. HOM05D006680 ORTHO05D008206 5.1e-42 174.5 124 75.0
CiPaw.01G147500 Carya illinoinensis HOM05D006680 ORTHO05D008206 6.7e-42 174.1 123 71.5
Dinv29759 Davidia involucrata HOM05D006680 ORTHO05D008206 8.7e-42 173.7 117 72.6
FAN12G3976 Fragaria x ananassa HOM05D006680 ORTHO05D008206 1.1e-41 173.3 115 73.0
QL06p009590 Quercus lobata HOM05D006680 ORTHO05D008206 1.1e-41 173.3 122 72.1
Peaxi162Scf00246g00103 Petunia axillaris HOM05D006680 ORTHO05D008206 1.5e-41 172.9 120 74.2
Lalb_Chr13g0303561 Lupinus albus HOM05D006680 ORTHO05D008206 3.3e-41 171.8 119 75.6
CiPaw.02G082300 Carya illinoinensis HOM05D006680 ORTHO05D008206 2.1e-40 169.1 123 69.1
Glyma.07G246700 Glycine max HOM05D006680 ORTHO05D008206 2.1e-40 169.1 124 74.2
Sopen01g028370 Solanum pennellii HOM05D006680 ORTHO05D008206 2.1e-40 169.1 116 75.0
PGSC0003DMG400011317 Solanum tuberosum HOM05D006680 ORTHO05D008206 3.7e-40 168.3 116 75.0
Oeu063359.1 Olea europaea HOM05D006680 ORTHO05D008206 1.8e-39 166.0 116 73.3
Migut.G00148 Erythranthe guttata HOM05D006680 ORTHO05D008206 6.9e-39 164.1 123 69.9
Nitab4.5_0003466g0010 Nicotiana tabacum HOM05D006680 ORTHO05D008206 6.9e-39 164.1 123 69.1
Sabra10G0008300 Salix brachista HOM05D006680 ORTHO05D008206 6.9e-39 164.1 123 71.5
Oeu001107.1 Olea europaea HOM05D006680 ORTHO05D008206 9.0e-39 163.7 112 74.1
Thhalv10021931m.g Eutrema salsugineum HOM05D006680 ORTHO05D008206 1.5e-38 162.9 109 78.0
Medtr4g120020 Medicago truncatula HOM05D006680 ORTHO05D008206 1.5e-38 162.9 123 70.7
Lalb_Chr07g0177791 Lupinus albus HOM05D006680 ORTHO05D008206 2.0e-38 162.5 119 72.3
Peaxi162Scf00646g00027 Petunia axillaris HOM05D006680 ORTHO05D008206 2.0e-38 162.5 116 73.3
TAR370G0002 Trochodendron aralioides HOM05D006680 ORTHO05D008206 7.6e-38 160.6 111 74.8
DCAR_027070 Daucus carota HOM05D006680 ORTHO05D008206 9.9e-38 160.2 109 70.6
CARHR081510 Cardamine hirsuta HOM05D006680 ORTHO05D008206 3.8e-37 158.3 99 83.8
Nn4g25792 Nelumbo nucifera HOM05D006680 ORTHO05D008206 3.8e-37 158.3 125 63.2
AT3G06890 Arabidopsis thaliana HOM05D006680 ORTHO05D008206 6.4e-37 157.5 101 82.2
Carub.0003s0642 Capsella rubella HOM05D006680 ORTHO05D008206 1.4e-36 156.4 98 83.7
AL3G18020 Arabidopsis lyrata HOM05D006680 ORTHO05D008206 1.9e-36 156.0 100 83.0
PGSC0003DMG400004705 Solanum tuberosum HOM05D006680 ORTHO05D008206 1.9e-36 156.0 112 70.5
MSTRG.3906 Avicennia marina HOM05D006680 ORTHO05D008206 3.2e-36 155.2 113 68.1
Hma1.2p1_1185F.1_g265000 Hydrangea macrophylla HOM05D006680 ORTHO05D008206 3.2e-36 155.2 123 68.3
Lsat_1_v5_gn_6_95660 Lactuca sativa HOM05D006680 ORTHO05D008206 4.2e-36 154.8 123 65.9
DCAR_002469 Daucus carota HOM05D006680 ORTHO05D008206 7.1e-36 154.1 110 70.0
SGA_v2.0_scaffold67G22622 Striga asiatica HOM05D006680 ORTHO05D008206 7.1e-36 154.1 123 65.0
Ah.08g214570 Amaranthus hybridus HOM05D006680 ORTHO05D008206 9.3e-36 153.7 114 73.7
Lj4g0016566 Lotus japonicus HOM05D006680 ORTHO05D008206 9.3e-36 153.7 90 85.6
Solyc12g099500.2 Solanum lycopersicum HOM05D006680 ORTHO05D008206 9.3e-36 153.7 112 69.6
Sopen12g034170 Solanum pennellii HOM05D006680 ORTHO05D008206 9.3e-36 153.7 112 69.6
Aqoxy2G02951 Aquilegia oxysepala HOM05D006680 ORTHO05D008206 1.2e-35 153.3 111 71.2
CANSAT78G1139 Cannabis sativa HOM05D006680 ORTHO05D008206 1.6e-35 152.9 123 65.0
CSS0014864 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 7.9e-35 150.6 124 64.5
MBI19_g25353_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 7.9e-35 150.6 111 65.8
Sc19g0005290 Simmondsia chinensis HOM05D006680 ORTHO05D008206 7.9e-35 150.6 117 68.4
Sc19g0005370 Simmondsia chinensis HOM05D006680 ORTHO05D008206 7.9e-35 150.6 117 68.4
Sed0015603 Sechium edule HOM05D006680 ORTHO05D008206 1.0e-34 150.2 123 61.0
Sp3g05850 Schrenkiella parvula HOM05D006680 ORTHO05D008206 1.3e-34 149.8 97 79.4
CAN.G484.39 Capsicum annuum HOM05D006680 ORTHO05D008206 1.8e-34 149.4 120 67.5
CSS0010580 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 2.3e-34 149.1 124 64.5
Psat4g026840 Pisum sativum HOM05D006680 ORTHO05D008206 2.3e-34 149.1 92 79.3
TPR.G3164 Trifolium pratense HOM05D006680 ORTHO05D008206 3.9e-34 148.3 95 80.0
AUR62040379 Chenopodium quinoa HOM05D006680 ORTHO05D008206 6.7e-34 147.5 114 68.4
ECA240G4018 Erigeron canadensis HOM05D006680 ORTHO05D008206 8.7e-34 147.1 111 67.6
Nn3g21479 Nelumbo nucifera HOM05D006680 ORTHO05D008206 8.7e-34 147.1 108 66.7
PGR004G0310 Punica granatum HOM05D006680 ORTHO05D008206 9.6e-33 143.7 118 66.9
DCAR_030521 Daucus carota HOM05D006680 ORTHO05D008206 6.2e-32 141.0 110 66.4
MBI18_g06870_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 8.2e-32 140.6 114 60.5
Phvul.003G097003 Phaseolus vulgaris HOM05D006680 ORTHO05D008206 8.2e-32 140.6 97 75.3
HanXRQChr13g0419971 Helianthus annuus HOM05D006680 ORTHO05D008206 1.8e-31 139.4 120 62.5
PSO832G1781 Papaver somniferum HOM05D006680 ORTHO05D008206 1.5e-30 136.3 114 61.4
PSO210G6323 Papaver somniferum HOM05D006680 ORTHO05D008206 4.5e-30 134.8 114 62.3
PGR031G3343 Punica granatum HOM05D006680 ORTHO05D008206 1.1e-28 130.2 105 58.1
Os03g0343800 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 3.2e-28 128.6 111 62.2
PSO170G5007 Papaver somniferum HOM05D006680 ORTHO05D008206 3.2e-28 128.6 99 70.7
PSO017G4993 Papaver somniferum HOM05D006680 ORTHO05D008206 7.1e-28 127.5 99 69.7
MD16G1168200 Malus domestica HOM05D006680 ORTHO05D008206 4.6e-27 124.8 120 63.3
Thecc.09G272700 Theobroma cacao HOM05D006680 ORTHO05D008206 1.0e-26 123.6 82 78.0
Zm00001eb124100 Zea mays HOM05D006680 ORTHO05D008206 3.0e-26 122.1 118 53.4
Thecc.05G268700 Theobroma cacao HOM05D006680 ORTHO05D008206 5.1e-26 121.3 88 72.7
HPP92_000110 Vanilla planifolia HOM05D006680 ORTHO05D008206 1.1e-25 120.2 107 56.1
Zm00001eb016470 Zea mays HOM05D006680 ORTHO05D008206 3.7e-24 115.2 113 55.8
unitig_32.g11869 Utricularia gibba HOM05D006680 ORTHO05D008206 4.8e-24 114.8 123 50.4
Rhsim04G0223700 Rhododendron simsii HOM05D006680 ORTHO05D008206 8.2e-24 114.0 93 63.4
Rhsim09G0007300 Rhododendron simsii HOM05D006680 ORTHO05D008206 8.2e-24 114.0 93 63.4
Eucgr.H03932 Eucalyptus grandis HOM05D006680 ORTHO05D008206 5.3e-23 111.3 114 53.5
HanXRQChr03g0089341 Helianthus annuus HOM05D006680 ORTHO05D008206 5.3e-23 111.3 116 54.3
ATR0796G044 Amborella trichopoda HOM05D006680 ORTHO05D008206 1.5e-22 109.8 113 54.0
Zm00001eb394930 Zea mays HOM05D006680 ORTHO05D008206 5.9e-22 107.8 92 60.9
TAR633G0386 Trochodendron aralioides HOM05D006680 ORTHO05D008206 4.2e-20 101.7 113 51.3
Os07g0673801 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 5.9e-14 81.3 98 45.9
SalBow5G0837 Salvia bowleyana HOM05D006680 ORTHO05D008206 7.9e-11 70.9 120 37.5
MELO3C006671.2 Cucumis melo HOM05D006680 ORTHO05D008206 1.5e-09 66.6 55 60.0
Sc09g0000290 Simmondsia chinensis HOM05D003064 ORTHO05D001733 5.3e-07 58.2 108 33.3
SalBow3G3394 Salvia bowleyana HOM05D003064 ORTHO05D001733 1.5e-06 56.6 64 39.1


User provided reference genes

Program Settings