Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 3.8e-310 1067.4 560 100.0
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 4.8e-305 1050.4 560 98.0
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 1.1e-296 1022.7 560 94.5
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 1.6e-279 965.7 560 88.6
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 6.1e-276 953.7 562 87.9
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 1.2e-271 939.5 562 85.9
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 2.0e-271 938.7 562 86.5
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 1.4e-267 926.0 562 85.4
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 3.0e-267 924.9 563 86.1
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 1.2e-266 922.9 561 85.0
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 7.0e-264 913.7 561 85.0
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 2.0e-263 912.1 561 84.5
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 2.0e-263 912.1 561 84.5
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 4.5e-263 911.0 561 83.8
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 1.1e-261 906.4 600 79.8
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 5.5e-261 904.0 561 82.7
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 5.2e-259 897.5 560 82.5
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 5.7e-258 894.0 562 84.5
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 7.0e-256 887.1 562 83.1
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 9.2e-256 886.7 562 81.0
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 4.5e-255 884.4 561 82.2
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 1.7e-254 882.5 562 80.8
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 2.8e-252 875.2 562 80.8
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 1.4e-251 872.8 626 74.8
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 1.4e-251 872.8 561 79.9
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 5.2e-251 870.9 561 79.9
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 8.9e-251 870.2 561 80.6
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 1.2e-250 869.8 562 80.8
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 1.2e-250 869.8 561 81.1
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 3.4e-250 868.2 561 79.9
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 7.5e-250 867.1 557 81.7
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 2.9e-249 865.1 562 80.2
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 3.7e-249 864.8 562 81.5
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 1.4e-248 862.8 561 79.7
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 9.2e-248 860.1 561 79.9
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 9.2e-248 860.1 560 79.1
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 4.6e-247 857.8 561 79.5
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 7.8e-247 857.1 561 79.9
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 1.7e-246 855.9 562 79.9
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 2.3e-246 855.5 562 79.4
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 1.5e-245 852.8 561 77.7
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 2.5e-245 852.0 574 78.4
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 1.2e-244 849.7 560 79.8
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 1.0e-243 846.7 561 78.4
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 1.8e-243 845.9 562 77.4
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 2.3e-243 845.5 542 81.9
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 3.1e-243 845.1 562 77.4
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 2.0e-242 842.4 515 84.3
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 8.3e-241 837.0 561 77.5
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 1.1e-240 836.6 613 74.7
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 7.0e-240 833.9 560 77.9
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 3.0e-238 828.6 561 76.5
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 3.0e-238 828.6 561 76.5
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 5.0e-238 827.8 565 77.5
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 6.6e-238 827.4 562 75.6
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 9.5e-237 823.5 557 77.7
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 2.3e-235 818.9 565 76.1
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 6.8e-235 817.4 560 77.3
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 4.4e-234 814.7 540 77.6
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 8.3e-233 810.4 576 75.9
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 1.2e-231 806.6 561 75.4
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 4.6e-231 804.7 561 75.4
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 3.3e-229 798.5 557 76.3
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 4.3e-229 798.1 561 74.9
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 4.3e-229 798.1 561 74.7
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 3.6e-228 795.0 648 67.7
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 2.3e-227 792.3 561 74.2
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 5.2e-227 791.2 566 72.8
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 1.2e-226 790.0 561 74.2
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 7.6e-226 787.3 511 80.2
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 1.7e-225 786.2 513 78.9
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 1.7e-225 786.2 514 79.4
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 2.2e-225 785.8 562 74.2
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 6.4e-225 784.3 562 73.5
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 6.4e-225 784.3 562 73.5
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 1.9e-224 782.7 562 73.1
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 1.7e-222 776.2 561 72.9
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 3.0e-222 775.4 576 71.9
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 5.1e-222 774.6 561 72.7
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 6.6e-222 774.2 561 73.6
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 6.6e-222 774.2 562 71.7
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 1.2e-220 770.0 562 72.6
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 1.2e-220 770.0 561 72.5
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 3.6e-220 768.5 546 73.3
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 4.0e-219 765.0 532 75.2
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 2.6e-218 762.3 562 70.8
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 2.9e-217 758.8 562 69.2
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 3.3e-213 745.3 531 73.3
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 2.0e-210 736.1 595 69.9
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 8.7e-198 694.1 476 75.4
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.2e-194 683.7 393 89.3
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 1.2e-178 630.6 455 69.5
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 2.1e-175 619.8 562 58.5
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 3.6e-175 619.0 434 71.9
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 2.3e-174 616.3 563 58.1
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 2.3e-166 589.7 569 55.4
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 5.7e-165 585.1 553 59.3
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 8.5e-161 571.2 563 54.9
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 5.9e-154 548.5 339 84.1
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 2.7e-151 539.7 566 50.5
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 1.0e-150 537.7 382 73.6
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 1.0e-142 511.1 523 59.1
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 1.4e-139 500.7 306 85.6
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 3.0e-129 466.5 349 69.6
Zm00001eb418180 Zea mays HOM05D005803 ORTHO05D008090 2.3e-121 440.3 356 61.5
ECA240G2219 Erigeron canadensis HOM05D005803 ORTHO05D008090 1.9e-120 437.2 340 66.8
TPR.G35525 Trifolium pratense HOM05D005803 ORTHO05D008090 6.9e-102 375.6 260 72.3
MCO16G459 Micromonas commoda HOM05D005803 ORTHO05D008090 2.8e-87 327.0 551 38.3
Oeu029260.1 Olea europaea HOM05D005803 ORTHO05D008090 2.2e-76 290.8 208 76.4
Solyc01g067490.4 Solanum lycopersicum HOM05D005803 ORTHO05D008090 6.0e-74 282.7 197 74.6
Oeu032270.1 Olea europaea HOM05D005803 ORTHO05D008090 1.6e-66 258.1 141 86.5
ECA240G4135 Erigeron canadensis HOM05D005803 ORTHO05D008090 4.3e-64 250.0 200 69.5
SEGI_31260 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 1.4e-59 235.0 182 61.0
Hma1.2p1_2251F.1_g318140 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.7e-55 221.5 129 86.0
TPR.G29244 Trifolium pratense HOM05D005803 ORTHO05D008090 1.6e-42 178.3 160 63.1
BcaC07g41552 Brassica carinata HOM05D000238 ORTHO05D020090 5.5e-35 153.3 180 51.1
TPR.G29241 Trifolium pratense HOM05D005803 ORTHO05D008090 1.6e-34 151.8 89 76.4
C06p17250 Brassica napus HOM05D005803 ORTHO05D020090 1.4e-33 148.7 158 55.7
BolC6t36924H Brassica oleracea HOM05D005803 ORTHO05D020090 1.4e-33 148.7 158 55.7
BcaC09g48072 Brassica carinata HOM05D005803 ORTHO05D020090 1.8e-33 148.3 178 50.0
Hma1.2p1_0055F.1_g031500 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.3e-31 142.1 90 77.8
AL92U10050 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 2.7e-29 134.4 130 61.5
C04p44010 Brassica napus HOM05D005803 ORTHO05D020090 1.1e-27 129.0 167 48.5
SEGI_25333 Sequoiadendron giganteum HOM05D005803 ORTHO05D020090 2.6e-24 117.9 77 72.7
BcaC08g44302 Brassica carinata HOM05D005803 ORTHO05D020090 5.4e-22 110.2 58 91.4
Hma1.2p1_2251F.1_g318130 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.5e-19 102.1 128 49.2
Atru.chr4.2782 Acer truncatum HOM05D005803 ORTHO05D008090 1.6e-18 98.6 87 64.4
Hma1.2p1_1012F.1_g247600 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.3e-17 94.7 90 57.8
SEGI_29512 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 3.7e-15 87.4 77 59.7
AagrBONN_evm.TU.Sc2ySwM_368.1566 Anthoceros agrestis HOM05D004454 ORTHO05D005462 1.8e-09 68.6 159 26.4
Medtr1g103750 Medicago truncatula HOM05D004454 ORTHO05D005462 4.4e-08 63.9 160 25.6
HanXRQChr05g0155441 Helianthus annuus HOM05D004454 ORTHO05D005462 8.3e-07 59.7 164 25.0
Lsat_1_v5_gn_5_17960 Lactuca sativa HOM05D004454 ORTHO05D005462 1.4e-06 58.9 174 24.1
SEGI_03047 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 1.4e-06 58.9 47 70.2
HanXRQChr14g0438801 Helianthus annuus HOM05D004454 ORTHO05D005462 3.2e-06 57.8 167 24.6
ECA246G3380 Erigeron canadensis HOM05D004454 ORTHO05D005462 4.1e-06 57.4 169 25.4


User provided reference genes

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