Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 2.7e-222 775.0 389 100.0
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 1.3e-139 500.4 397 64.5
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 9.2e-138 494.2 328 74.1
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 1.6e-137 493.4 265 92.1
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 8.0e-134 481.1 405 62.2
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 5.2e-133 478.4 394 63.2
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 8.9e-133 477.6 399 64.2
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 1.4e-130 470.3 415 58.8
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 1.4e-130 470.3 399 60.4
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 3.5e-129 465.7 398 60.3
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 4.6e-129 465.3 397 60.7
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 1.0e-128 464.2 399 60.7
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.3e-128 463.0 403 58.8
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 2.3e-128 463.0 387 60.5
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 1.1e-127 460.7 392 61.0
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 1.5e-127 460.3 383 62.1
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 1.9e-127 459.9 389 60.7
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 1.9e-127 459.9 388 61.3
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 2.5e-127 459.5 391 61.6
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 2.1e-126 456.4 389 59.9
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 4.7e-126 455.3 404 58.7
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 1.8e-125 453.4 313 68.1
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 4.0e-125 452.2 388 60.8
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 4.0e-125 452.2 399 59.6
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 4.0e-125 452.2 407 58.2
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 8.9e-125 451.1 414 57.5
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 2.0e-124 449.9 406 57.6
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 4.4e-124 448.7 388 60.6
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 1.7e-123 446.8 368 61.7
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 2.2e-123 446.4 397 58.7
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 4.1e-122 442.2 390 58.7
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 4.1e-122 442.2 325 64.3
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 7.1e-122 441.4 404 56.9
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 7.1e-122 441.4 386 57.8
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 1.3e-120 437.2 402 55.2
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 1.3e-120 437.2 407 55.8
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 2.3e-120 436.4 311 67.2
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 3.9e-120 435.6 389 58.6
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 5.1e-120 435.3 394 56.6
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 5.1e-120 435.3 382 60.5
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 4.3e-119 432.2 318 67.6
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 4.3e-119 432.2 359 58.8
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 2.8e-118 429.5 393 57.8
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 2.8e-118 429.5 349 60.2
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 6.2e-118 428.3 398 55.3
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 1.4e-117 427.2 386 57.3
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 1.4e-117 427.2 386 57.3
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 1.4e-117 427.2 390 54.9
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 1.4e-117 427.2 391 55.0
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 2.4e-117 426.4 464 51.7
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 3.1e-117 426.0 387 56.1
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 6.8e-117 424.9 326 65.6
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 8.9e-117 424.5 394 54.6
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 8.9e-117 424.5 317 66.2
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 4.4e-116 422.2 390 55.1
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 5.8e-116 421.8 393 54.2
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 9.9e-116 421.0 387 56.1
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 9.9e-116 421.0 398 55.3
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 2.2e-115 419.9 392 55.4
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 4.9e-115 418.7 390 54.9
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 6.4e-115 418.3 389 54.8
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 6.4e-115 418.3 389 54.8
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 7.1e-114 414.8 382 56.8
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 1.6e-113 413.7 386 55.7
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 2.7e-113 412.9 327 60.9
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 3.5e-113 412.5 301 65.1
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 7.8e-113 411.4 408 50.7
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 7.8e-113 411.4 402 53.0
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.3e-112 410.6 419 53.9
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.7e-112 410.2 404 51.7
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 2.3e-112 409.8 402 53.0
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 5.1e-112 408.7 396 54.0
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 4.3e-111 405.6 389 53.2
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 8.1e-110 401.4 401 52.1
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 1.8e-109 400.2 400 51.2
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 5.3e-109 398.7 307 61.2
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 5.3e-109 398.7 320 57.8
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 2.0e-108 396.7 348 54.6
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 4.4e-108 395.6 306 58.8
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 7.6e-108 394.8 402 52.0
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 4.9e-107 392.1 308 60.4
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 1.1e-106 391.0 302 59.3
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 2.7e-105 386.3 386 52.1
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 4.6e-105 385.6 382 53.1
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 6.0e-105 385.2 308 59.1
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 7.8e-105 384.8 367 52.6
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 1.0e-104 384.4 403 51.4
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 1.5e-103 380.6 321 57.6
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.3e-102 377.5 334 57.8
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 2.8e-102 376.3 394 50.5
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 1.1e-101 374.4 386 51.6
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 1.4e-101 374.0 328 55.2
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 3.1e-101 372.9 402 50.2
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 1.5e-100 370.5 389 50.9
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 2.0e-100 370.2 328 58.5
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 7.6e-100 368.2 333 59.2
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 1.4e-98 364.0 307 56.4
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 4.6e-97 359.0 384 51.0
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 8.1e-94 348.2 317 58.0
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 1.3e-91 340.9 320 52.2
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 1.3e-91 340.9 365 48.5
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 2.5e-90 336.7 316 50.6
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 1.8e-88 330.5 395 46.6
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 5.1e-88 328.9 284 61.3
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 5.7e-87 325.5 344 50.9
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 8.4e-83 311.6 270 57.8
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 1.2e-81 307.8 312 51.6
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 2.3e-80 303.5 345 47.0
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 3.0e-80 303.1 230 63.5
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 1.3e-78 297.7 362 47.5
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 1.3e-78 297.7 303 51.2
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 3.6e-73 279.6 314 50.3
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 2.3e-72 276.9 277 50.9
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 2.9e-59 233.4 126 92.9
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 1.9e-58 230.7 351 42.7
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 4.0e-56 223.0 273 46.9
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 2.6e-55 220.3 306 43.5
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 7.2e-42 175.6 132 63.6
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 2.0e-39 167.5 123 65.0
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 3.7e-38 163.3 181 44.8
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 3.1e-37 160.2 166 49.4
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 1.7e-35 154.5 302 29.1
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 8.6e-35 152.1 319 32.6
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 1.6e-25 121.3 76 71.1
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 1.2e-23 115.2 97 61.9
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 2.9e-22 110.5 213 34.3
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 8.3e-22 109.0 150 34.7
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 2.4e-21 107.5 93 54.8
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 3.2e-21 107.1 68 69.1
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 1.2e-20 105.1 214 36.4
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 3.0e-19 100.5 247 27.5
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 3.9e-19 100.1 87 56.3
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 1.5e-18 98.2 305 24.6
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 2.5e-18 97.4 111 43.2
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 3.9e-11 73.6 72 54.2
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 5.6e-10 69.7 326 21.8
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 9.5e-10 68.9 68 50.0
Eucgr.H03758 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.2e-09 68.6 44 63.6
Hund28065 Selenicereus undatus HOM05D000003 ORTHO05D000006 2.8e-09 67.4 131 35.9
Hund28074 Selenicereus undatus HOM05D000003 ORTHO05D000006 2.8e-09 67.4 131 35.9


User provided reference genes

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