Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 6.1e-202 707.2 346 100.0
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 2.3e-188 662.1 357 91.9
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 2.9e-151 538.9 352 77.0
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 5.1e-148 528.1 294 86.1
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 5.6e-147 524.6 323 79.9
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 1.8e-145 519.6 294 85.4
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 1.3e-143 513.5 327 77.7
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 1.3e-143 513.5 347 72.9
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 2.9e-143 512.3 296 82.1
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 3.8e-143 511.9 345 72.8
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 3.8e-143 511.9 291 83.2
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 3.2e-142 508.8 294 83.0
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 4.2e-142 508.4 290 81.7
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 6.0e-141 504.6 297 79.8
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 1.8e-140 503.1 314 76.8
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 3.9e-140 501.9 297 79.5
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 1.5e-139 500.0 303 78.2
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.9e-139 499.6 345 72.5
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 2.5e-139 499.2 329 74.2
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 5.7e-139 498.0 290 80.7
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 5.7e-139 498.0 322 73.9
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 4.8e-138 495.0 311 76.5
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 1.4e-137 493.4 328 72.6
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 6.9e-137 491.1 289 78.2
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 9.0e-137 490.7 324 74.1
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 9.0e-137 490.7 293 78.5
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 4.5e-136 488.4 342 70.8
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 2.9e-135 485.7 283 78.8
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 2.9e-135 485.7 295 78.3
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 3.8e-135 485.3 340 70.0
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 5.0e-135 485.0 295 78.0
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 3.2e-134 482.3 294 78.6
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 4.2e-134 481.9 291 77.7
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 1.6e-133 479.9 283 78.8
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 1.6e-133 479.9 314 73.2
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 1.6e-133 479.9 353 67.7
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 2.1e-133 479.6 312 73.1
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 6.1e-133 478.0 291 77.0
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 1.8e-132 476.5 344 69.5
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 5.1e-132 474.9 309 74.1
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 1.9e-131 473.0 292 76.0
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 1.3e-130 470.3 322 70.5
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 3.7e-130 468.8 346 68.2
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 9.1e-129 464.2 302 73.8
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 1.2e-128 463.8 292 74.7
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 2.6e-128 462.6 290 76.2
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 2.6e-128 462.6 273 79.1
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 5.9e-128 461.5 338 68.6
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 7.7e-128 461.1 330 67.9
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 7.7e-128 461.1 331 67.1
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 1.0e-127 460.7 319 71.5
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 2.9e-127 459.1 341 69.5
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 2.9e-127 459.1 336 67.0
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 6.5e-127 458.0 302 72.8
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 8.5e-127 457.6 322 69.3
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 5.5e-126 454.9 293 72.0
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 7.2e-126 454.5 337 65.9
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 7.2e-126 454.5 342 67.0
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 1.2e-125 453.8 326 69.0
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 2.1e-125 453.0 343 67.6
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 2.7e-125 452.6 293 71.3
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 4.7e-125 451.8 331 67.1
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 3.9e-124 448.7 299 71.2
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 5.1e-124 448.4 330 66.7
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 8.8e-124 447.6 296 71.6
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 3.3e-123 445.7 343 64.1
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 4.4e-123 445.3 314 69.7
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 5.7e-123 444.9 266 77.1
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 7.4e-123 444.5 341 65.4
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 1.3e-122 443.7 272 77.2
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 2.8e-122 442.6 316 66.8
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 3.7e-122 442.2 320 66.9
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 4.8e-122 441.8 345 66.4
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 8.2e-122 441.0 342 65.5
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.1e-121 440.7 294 71.8
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.4e-121 440.3 314 68.2
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 1.8e-121 439.9 262 76.0
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 1.8e-121 439.9 281 73.0
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 2.4e-121 439.5 292 72.6
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 1.5e-120 436.8 306 69.0
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 2.6e-120 436.0 292 71.6
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 3.4e-120 435.6 305 69.2
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 4.5e-120 435.3 291 71.5
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 4.5e-120 435.3 323 65.3
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 6.5e-119 431.4 321 66.7
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 1.4e-118 430.3 330 65.2
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 5.5e-118 428.3 292 70.5
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 7.2e-118 427.9 272 72.4
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 2.7e-117 426.0 273 72.9
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 6.1e-117 424.9 312 67.0
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 1.0e-116 424.1 295 70.5
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 3.9e-116 422.2 341 62.8
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 5.2e-116 421.8 311 66.6
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 6.7e-116 421.4 317 66.6
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 8.8e-116 421.0 289 69.6
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 1.1e-115 420.6 270 73.3
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 1.7e-114 416.8 268 71.3
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 2.2e-114 416.4 299 67.9
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 1.6e-112 410.2 372 59.9
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 3.5e-112 409.1 311 65.6
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 4.5e-112 408.7 271 70.5
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 5.9e-112 408.3 311 65.0
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 1.0e-111 407.5 294 65.0
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 2.2e-111 406.4 232 81.9
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 5.0e-111 405.2 321 64.5
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 4.2e-110 402.1 346 61.0
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 2.1e-109 399.8 303 65.7
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 1.4e-108 397.1 316 63.6
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 4.0e-108 395.6 336 61.6
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 9.7e-107 391.0 376 54.8
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 2.8e-106 389.4 338 57.1
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.8e-105 386.7 337 58.2
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 3.2e-102 375.9 265 70.2
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 2.3e-100 369.8 293 64.2
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 8.8e-100 367.9 316 58.9
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 1.2e-99 367.5 269 63.9
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 1.3e-98 364.0 290 62.1
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 1.9e-94 350.1 324 56.5
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 3.0e-92 342.8 314 57.3
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 6.8e-92 341.7 322 54.7
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 4.4e-91 339.0 283 58.0
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.0e-88 330.1 344 53.2
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.7e-88 329.7 345 52.8
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 2.7e-88 329.7 320 49.1
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 1.7e-87 327.0 258 56.6
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 8.6e-87 324.7 275 61.1
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 1.9e-86 323.6 187 81.3
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 5.6e-86 322.0 267 56.9
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 2.8e-85 319.7 321 51.1
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.0e-84 317.8 353 51.0
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 4.0e-84 315.8 372 48.9
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 1.2e-83 314.3 338 50.3
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 2.0e-83 313.5 351 50.4
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 1.4e-81 307.4 236 66.5
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 3.9e-79 299.3 177 79.1
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 2.1e-77 293.5 260 53.5
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 5.2e-76 288.9 176 76.1
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 6.8e-76 288.5 297 50.2
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 1.2e-75 287.7 267 55.1
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 2.6e-75 286.6 176 76.1
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 8.3e-74 281.6 273 49.1
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 7.8e-72 275.0 338 45.3
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.3e-71 274.2 176 71.6
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 2.3e-71 273.5 179 70.9
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 1.1e-70 271.2 206 63.6
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 3.6e-69 266.2 547 34.7
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 3.1e-68 263.1 214 61.7
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 3.4e-67 259.6 346 46.0
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 6.4e-66 255.4 221 61.1
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 3.2e-65 253.1 188 65.4
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 3.2e-65 253.1 187 67.9
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 4.1e-65 252.7 187 67.4
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 2.7e-64 250.0 195 62.6
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 5.6e-54 215.7 258 41.1
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 1.6e-53 214.2 291 39.9
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 3.4e-51 206.5 350 34.6
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 4.4e-51 206.1 189 55.0
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 5.1e-47 192.6 113 74.3
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 1.5e-46 191.0 124 71.0
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 8.1e-45 185.3 136 66.9
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 3.1e-44 183.3 117 67.5
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 4.5e-43 179.5 106 77.4
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 4.5e-43 179.5 111 73.9
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 5.4e-41 172.6 97 78.4
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 9.3e-41 171.8 104 74.0
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.2e-40 171.4 96 79.2
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.8e-39 167.5 186 51.1
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 3.9e-39 166.4 127 57.5
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 1.4e-36 157.9 84 86.9
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 1.1e-33 148.3 138 55.8
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 5.3e-28 129.4 90 62.2
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 2.5e-25 120.6 91 60.4
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 7.1e-25 119.0 61 80.3
SEGI_13555 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 9.0e-20 102.1 72 61.1
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 1.2e-16 91.7 56 75.0
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.6e-16 91.3 51 80.4
CSS0047531 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D112748 6.3e-13 79.3 83 55.4
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 8.2e-13 79.0 51 76.5
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 5.5e-09 66.2 45 66.7
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 3.6e-08 63.5 43 67.4
Medtr8g027510 Medicago truncatula HOM05D003864 ORTHO05D004658 7.9e-08 62.4 37 78.4


User provided reference genes

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