Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 0.0e+00 1787.3 932 100.0
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 6.1e-305 1050.8 637 90.6
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 8.2e-302 1040.4 943 59.8
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 4.1e-301 1038.1 674 85.3
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 7.0e-293 1010.7 643 82.6
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 9.8e-271 937.2 953 53.0
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 6.6e-267 924.5 1028 50.8
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 3.6e-265 918.7 928 52.3
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 6.2e-265 917.9 939 52.5
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 6.8e-264 914.4 939 52.1
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 1.7e-262 909.8 942 53.2
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 3.0e-259 899.0 951 54.6
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 1.5e-250 870.2 975 49.4
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 2.1e-249 866.3 977 50.3
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 3.1e-248 862.4 915 50.1
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 7.6e-247 857.8 923 50.6
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 2.3e-243 846.3 975 48.7
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 1.2e-236 823.9 805 54.7
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 4.5e-231 805.4 1049 45.3
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 2.2e-230 803.1 932 48.6
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 7.1e-229 798.1 924 47.5
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 7.9e-228 794.7 1082 46.4
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 2.8e-225 786.2 1035 45.8
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 3.1e-224 782.7 1066 42.3
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 6.5e-222 775.0 936 47.5
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 1.1e-218 764.2 1082 41.4
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 2.2e-217 760.0 905 48.5
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 8.2e-217 758.1 928 47.5
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 9.0e-216 754.6 944 44.3
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 1.5e-215 753.8 1029 45.9
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 5.9e-215 751.9 912 47.5
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 1.3e-214 750.7 915 45.2
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 1.7e-214 750.4 929 45.4
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 2.9e-214 749.6 927 49.0
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 8.5e-214 748.0 930 45.6
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 8.5e-214 748.0 976 43.1
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 7.9e-212 741.5 933 45.7
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 1.8e-211 740.3 1001 46.1
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 5.1e-211 738.8 938 45.4
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 5.1e-211 738.8 932 44.7
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 1.5e-210 737.3 971 42.7
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 2.5e-210 736.5 911 46.1
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 5.7e-210 735.3 932 43.9
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 5.7e-210 735.3 930 44.3
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 7.4e-210 734.9 1063 42.7
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 9.7e-210 734.6 927 44.6
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 9.7e-210 734.6 927 44.6
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 9.7e-210 734.6 931 44.8
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 1.7e-209 733.8 926 45.1
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 2.2e-209 733.4 931 45.3
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 4.8e-209 732.3 920 45.0
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 4.8e-209 732.3 1015 43.1
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 6.3e-209 731.9 919 44.7
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 3.1e-208 729.6 978 43.7
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 6.9e-208 728.4 734 53.5
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 1.2e-207 727.6 1031 44.7
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 2.6e-207 726.5 912 46.5
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 4.5e-207 725.7 962 44.3
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 1.0e-206 724.5 935 43.4
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 1.7e-206 723.8 1089 42.4
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 5.5e-205 718.8 924 45.7
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 3.6e-204 716.1 964 44.9
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 8.8e-203 711.4 1051 41.9
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 5.7e-202 708.8 928 44.4
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 1.7e-201 707.2 1053 40.3
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 1.8e-200 703.7 989 43.6
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 3.1e-200 703.0 1078 41.1
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 4.1e-200 702.6 1056 42.9
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 2.5e-197 693.3 1014 41.2
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 2.1e-196 690.3 1097 38.7
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 2.7e-196 689.9 994 42.1
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 2.7e-196 689.9 994 42.1
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 8.0e-196 688.3 1032 43.8
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 3.0e-195 686.4 937 43.9
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.5e-194 684.1 1026 45.4
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 5.3e-192 675.6 976 44.8
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 2.6e-191 673.3 1016 39.4
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 4.5e-191 672.5 927 43.9
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 4.5e-191 672.5 1158 37.3
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 1.0e-190 671.4 940 42.7
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 2.7e-188 663.3 933 43.0
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 3.0e-187 659.8 924 43.9
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 4.0e-187 659.4 808 45.5
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 1.5e-186 657.5 961 42.7
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 1.4e-184 651.0 1005 38.5
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 1.4e-184 651.0 925 41.7
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 2.0e-183 647.1 1049 39.8
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.8e-182 642.9 1076 42.6
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 9.4e-181 638.3 934 42.8
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 5.7e-178 629.0 949 42.4
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 1.8e-176 624.0 927 40.9
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 2.9e-174 616.7 749 48.2
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.6e-172 610.9 794 46.3
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 2.1e-172 610.5 931 41.6
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 6.8e-171 605.5 929 39.7
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 1.5e-170 604.4 935 40.2
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 5.7e-170 602.4 517 57.3
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 2.4e-168 597.0 1068 38.1
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 1.3e-161 574.7 904 40.6
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 8.3e-161 572.0 711 46.1
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 4.3e-157 559.7 989 38.0
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 2.3e-150 537.3 1183 32.5
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.0e-150 537.0 794 42.7
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 7.6e-138 495.7 941 37.4
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 1.8e-131 474.6 918 32.2
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 9.0e-131 472.2 910 36.0
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 1.2e-130 471.9 844 36.8
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 3.0e-118 430.6 283 68.2
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 5.8e-114 416.4 494 44.1
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 3.5e-111 407.1 317 63.7
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 5.5e-104 383.3 485 42.3
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 8.2e-100 369.4 904 31.0
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 4.8e-92 343.6 858 29.3
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 8.2e-92 342.8 900 29.3
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 3.0e-86 324.3 292 58.2
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 1.4e-78 298.9 583 35.2
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 2.4e-67 261.5 225 59.6
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 2.1e-63 248.4 299 47.8
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.2e-61 242.7 224 57.6
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.5e-61 242.3 587 34.1
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 7.0e-59 233.4 221 53.8
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 7.7e-58 229.9 218 53.2
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 2.9e-57 228.0 300 44.3
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 2.0e-53 215.3 487 33.1
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 7.0e-51 206.8 207 54.6
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 1.3e-49 202.6 199 59.3
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 2.3e-49 201.8 704 26.4
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 1.4e-43 182.6 211 49.8
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 2.4e-43 181.8 133 61.7
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 3.2e-43 181.4 457 28.4
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 3.5e-42 177.9 210 50.5
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 1.3e-41 176.0 186 40.3
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 3.9e-41 174.5 289 39.1
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.5e-40 172.6 250 42.0
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 2.0e-37 162.2 368 36.7
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 1.1e-35 156.4 255 36.9
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 7.3e-32 143.7 114 62.3
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 1.5e-29 136.0 163 47.9
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 2.0e-29 135.6 214 39.7
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.1e-27 129.8 538 31.2
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.5e-24 119.4 85 63.5
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 1.2e-21 109.8 185 34.6
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 1.6e-15 89.4 93 49.5
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 3.6e-15 88.2 148 39.2
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 1.8e-14 85.9 187 34.8
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 1.8e-14 85.9 136 36.8
Sabra16G0037300 Salix brachista HOM05D004666 ORTHO05D017783 6.9e-14 84.0 112 45.5
RcHm_v2.0_Chr7g0223981 Rosa chinensis HOM05D004666 ORTHO05D005822 2.5e-08 65.5 40 67.5
Os07g0454400 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 1.1e-06 60.1 91 34.1


User provided reference genes

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