Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G199900 Populus trichocarpa HOM05D006658 ORTHO05D008515 8.3e-208 726.9 383 100.0
Sabra08G0161000 Salix brachista HOM05D006658 ORTHO05D008515 4.4e-193 677.9 395 91.9
Manes.15G021400 Manihot esculenta HOM05D006658 ORTHO05D008515 2.3e-157 559.3 394 76.6
Cpa.g.sc16.52 Carica papaya HOM05D006658 ORTHO05D008515 6.7e-157 557.8 383 78.1
Haze_00994 Corylus avellana HOM05D006658 ORTHO05D008515 1.6e-155 553.1 392 75.0
Atru.chr4.2671 Acer truncatum HOM05D006658 ORTHO05D008515 1.8e-154 549.7 388 76.0
Cfa015553 Carpinus fangiana HOM05D006658 ORTHO05D008515 5.3e-154 548.1 391 73.9
CANSAT78G1897 Cannabis sativa HOM05D006658 ORTHO05D008515 9.3e-151 537.3 383 72.8
QL06p005937 Quercus lobata HOM05D006658 ORTHO05D008515 2.7e-150 535.8 390 75.1
CiPaw.02G090200 Carya illinoinensis HOM05D006658 ORTHO05D008515 3.3e-148 528.9 392 72.4
Prupe.1G148500 Prunus persica HOM05D006658 ORTHO05D008515 1.1e-146 523.9 383 72.3
TAR365G0289 Trochodendron aralioides HOM05D006658 ORTHO05D008515 1.8e-146 523.1 391 70.3
TWI53G0915 Tripterygium wilfordii HOM05D006658 ORTHO05D008515 2.4e-146 522.7 396 71.5
GSVIVG01017866001 Vitis vinifera HOM05D006658 ORTHO05D008515 5.3e-146 521.5 400 69.5
MD13G1180000 Malus domestica HOM05D006658 ORTHO05D008515 1.2e-145 520.4 383 70.8
FvH4_4g14170 Fragaria vesca HOM05D006658 ORTHO05D008515 2.0e-145 519.6 395 69.1
FAN12G0854 Fragaria x ananassa HOM05D006658 ORTHO05D008515 3.4e-145 518.8 395 69.1
Thecc.04G218900 Theobroma cacao HOM05D006658 ORTHO05D008515 3.8e-144 515.4 356 78.1
Ciclev10005116m.g Citrus clementina HOM05D006658 ORTHO05D008515 5.0e-144 515.0 406 70.0
Lalb_Chr15g0087271 Lupinus albus HOM05D006658 ORTHO05D008515 3.2e-143 512.3 388 70.1
VMungo0540G0090 Vigna mungo HOM05D006658 ORTHO05D008515 5.5e-143 511.5 390 70.3
Gorai.006G218300 Gossypium raimondii HOM05D006658 ORTHO05D008515 9.3e-143 510.8 399 70.4
Eucgr.E03351 Eucalyptus grandis HOM05D006658 ORTHO05D008515 1.6e-142 510.0 389 68.9
RcHm_v2.0_Chr4g0419051 Rosa chinensis HOM05D006658 ORTHO05D008515 7.9e-142 507.7 388 69.1
Carub.0003s2162 Capsella rubella HOM05D006658 ORTHO05D008515 1.8e-141 506.5 333 77.8
Phvul.006G155900 Phaseolus vulgaris HOM05D006658 ORTHO05D008515 6.7e-141 504.6 386 69.2
AL3G35700 Arabidopsis lyrata HOM05D006658 ORTHO05D008515 1.9e-140 503.1 333 77.8
Medtr2g021220 Medicago truncatula HOM05D006658 ORTHO05D008515 1.9e-140 503.1 386 68.7
Rhsim02G0017700 Rhododendron simsii HOM05D006658 ORTHO05D008515 3.3e-140 502.3 378 70.4
AT3G21580 Arabidopsis thaliana HOM05D006658 ORTHO05D008515 4.3e-140 501.9 376 70.2
CARHR097540 Cardamine hirsuta HOM05D006658 ORTHO05D008515 7.4e-140 501.1 333 76.3
Sp3g19610 Schrenkiella parvula HOM05D006658 ORTHO05D008515 1.6e-139 500.0 334 76.9
Dinv38362 Davidia involucrata HOM05D006658 ORTHO05D008515 2.8e-139 499.2 379 70.2
arahy.Tifrunner.gnm1.ann1.V9Y9T8 Arachis hypogaea HOM05D006658 ORTHO05D008515 3.7e-139 498.8 372 70.4
Ca_00605_v3 Cicer arietinum L. HOM05D000887 ORTHO05D000908 3.7e-139 498.8 335 74.9
TPR.G28916 Trifolium pratense HOM05D000887 ORTHO05D000908 1.1e-138 497.3 389 67.4
Lj6g0017983 Lotus japonicus HOM05D006658 ORTHO05D008515 2.4e-138 496.1 333 76.0
Glyma.15G101900 Glycine max HOM05D006658 ORTHO05D008515 4.1e-138 495.4 390 68.2
Thhalv10020897m.g Eutrema salsugineum HOM05D006658 ORTHO05D008515 9.0e-138 494.2 334 76.0
arahy.Tifrunner.gnm1.ann1.Q3CYV3 Arachis hypogaea HOM05D006658 ORTHO05D008515 1.5e-137 493.4 328 75.9
vmacro15292 Vaccinium macrocarpon HOM05D006658 ORTHO05D008515 2.0e-137 493.0 376 69.7
BcaC01g03498 Brassica carinata HOM05D006658 ORTHO05D008515 3.4e-137 492.3 333 76.6
MELO3C021391.2 Cucumis melo HOM05D006658 ORTHO05D008515 5.9e-137 491.5 391 65.5
FAN07G2752 Fragaria x ananassa HOM05D006658 ORTHO05D008515 7.7e-137 491.1 426 62.7
A03p42320 Brassica napus HOM05D006658 ORTHO05D008515 1.0e-136 490.7 380 69.7
BraA03t13384Z Brassica rapa HOM05D006658 ORTHO05D008515 1.0e-136 490.7 380 69.7
PGR065G0004 Punica granatum HOM05D006658 ORTHO05D008515 1.0e-136 490.7 392 68.4
BcaB04g19174 Brassica carinata HOM05D006658 ORTHO05D008515 1.3e-136 490.3 384 68.2
THA.LOC104820222 Tarenaya hassleriana HOM05D006658 ORTHO05D008515 8.5e-136 487.6 332 74.4
Aa31sc174G10 Aethionema arabicum HOM05D006658 ORTHO05D008515 1.1e-135 487.3 332 74.7
Actinidia00076 Actinidia chinensis HOM05D006658 ORTHO05D008515 3.2e-135 485.7 371 68.7
MBI17_g29609_MAGBIO Magnolia biondii HOM05D006658 ORTHO05D008515 5.5e-135 485.0 393 67.4
BolC3t17462H Brassica oleracea HOM05D006658 ORTHO05D008515 1.6e-134 483.4 333 75.7
C03p51780 Brassica napus HOM05D006658 ORTHO05D008515 3.6e-134 482.3 333 75.4
PSO170G4721 Papaver somniferum HOM05D006658 ORTHO05D008515 3.6e-134 482.3 390 67.7
CsaV3_6G005460 Cucumis sativus L. HOM05D006658 ORTHO05D008515 4.6e-134 481.9 391 65.5
ClCG06G005690 Citrullus lanatus HOM05D006658 ORTHO05D008515 1.4e-133 480.3 391 65.0
Sed0019307 Sechium edule HOM05D006658 ORTHO05D008515 3.0e-133 479.2 388 65.5
Aqoxy2G03225 Aquilegia oxysepala HOM05D006658 ORTHO05D008515 1.3e-131 473.8 369 66.7
PSO407G0441 Papaver somniferum HOM05D006658 ORTHO05D008515 3.7e-131 472.2 314 77.4
COL.COLO4_21620 Corchorus olitorius HOM05D006658 ORTHO05D008515 4.2e-127 458.8 346 71.7
Sc13g0003830 Simmondsia chinensis HOM05D006658 ORTHO05D008515 4.2e-127 458.8 363 66.1
Duzib212G0844 Durio zibethinus HOM05D006658 ORTHO05D008515 1.6e-126 456.8 347 72.3
HanXRQChr12g0359491 Helianthus annuus HOM05D006658 ORTHO05D008515 3.9e-125 452.2 349 66.5
Lsat_1_v5_gn_5_165480 Lactuca sativa HOM05D006658 ORTHO05D008515 1.1e-124 450.7 350 68.0
Cc03_g02920 Coffea canephora HOM05D006658 ORTHO05D008515 1.3e-123 447.2 340 67.1
DCAR_027140 Daucus carota HOM05D006658 ORTHO05D008515 4.8e-123 445.3 338 69.5
Psat5g176560 Pisum sativum HOM05D006658 ORTHO05D008515 2.0e-121 439.9 402 61.7
Os05g0400600 Oryza sativa ssp. japonica HOM05D006658 ORTHO05D008515 2.6e-121 439.5 313 69.6
Gohir.A09G200700 Gossypium hirsutum HOM05D006658 ORTHO05D008515 1.3e-120 437.2 399 63.2
Gohir.D09G194900 Gossypium hirsutum HOM05D006658 ORTHO05D008515 2.9e-120 436.0 399 62.9
Nn4g26153 Nelumbo nucifera HOM05D006658 ORTHO05D008515 1.1e-119 434.1 343 67.6
HPP92_001401 Vanilla planifolia HOM05D006658 ORTHO05D008515 5.5e-119 431.8 308 70.5
Zm00001eb346810 Zea mays HOM05D006658 ORTHO05D008515 1.2e-118 430.6 316 69.6
ATR0626G018 Amborella trichopoda HOM05D006658 ORTHO05D007095 3.7e-115 419.1 290 72.8
MSTRG.24762 Avicennia marina HOM05D006658 ORTHO05D008515 1.6e-113 413.7 369 58.8
Sopen01g032090 Solanum pennellii HOM05D006658 ORTHO05D008515 2.7e-113 412.9 376 58.2
Solyc01g080300.4 Solanum lycopersicum HOM05D006658 ORTHO05D008515 3.5e-113 412.5 376 58.0
CAN.G522.10 Capsicum annuum HOM05D006658 ORTHO05D008515 4.5e-113 412.1 333 63.7
Migut.N00139 Erythranthe guttata HOM05D006658 ORTHO05D008515 1.3e-112 410.6 377 58.9
SalBow5G3198 Salvia bowleyana HOM05D006658 ORTHO05D008515 2.9e-112 409.5 317 66.2
PGSC0003DMG400004353 Solanum tuberosum HOM05D006658 ORTHO05D008515 2.9e-112 409.5 321 64.5
FAN22G2256 Fragaria x ananassa HOM05D006658 ORTHO05D008515 3.8e-112 409.1 256 80.9
EL10Ac4g08937 Beta vulgaris HOM05D006658 ORTHO05D008515 3.2e-111 406.0 350 64.3
PGR004G0022 Punica granatum HOM05D006658 ORTHO05D008515 5.5e-111 405.2 333 67.0
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 7.2e-111 404.8 344 61.3
Nitab4.5_0003070g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008515 6.1e-110 401.7 408 53.9
SGA_v2.0_scaffold107G30765 Striga asiatica HOM05D006658 ORTHO05D008515 1.2e-108 397.5 325 61.8
SEGI_40702 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 1.0e-104 384.4 340 57.1
RcHm_v2.0_Chr2g0086241 Rosa chinensis HOM05D006658 ORTHO05D008515 4.7e-102 375.6 340 62.4
CSS0022396 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 2.6e-100 369.8 252 75.0
CDE02G1914 Ceratophyllum demersum HOM05D006658 ORTHO05D008515 3.5e-97 359.4 325 58.8
Glyma.13G210900 Glycine max HOM05D006658 ORTHO05D008515 2.0e-92 343.6 317 60.9
Mapoly0015s0173 Marchantia polymorpha HOM05D006658 ORTHO05D008515 5.7e-92 342.0 305 56.7
AUR62004779 Chenopodium quinoa HOM05D006658 ORTHO05D008515 2.9e-91 339.7 358 55.0
ECA234G3592 Erigeron canadensis HOM05D006658 ORTHO05D008515 1.1e-90 337.8 250 70.0
Pp3c16_5660 Physcomitrium patens HOM05D006658 ORTHO05D008515 4.1e-90 335.9 292 56.2
Ah.06g191650 Amaranthus hybridus HOM05D006658 ORTHO05D008515 9.5e-87 324.7 297 59.6
SMO361G0230 Selaginella moellendorffii HOM05D006658 ORTHO05D008515 1.6e-86 323.9 332 50.3
RcHm_v2.0_Chr5g0064291 Rosa chinensis HOM05D006658 ORTHO05D008515 6.8e-85 318.5 202 80.7
unitig_61.g26008 Utricularia gibba HOM05D006658 ORTHO05D008515 1.0e-80 304.7 319 51.7
Psat1g186040 Pisum sativum HOM05D006658 ORTHO05D008515 2.5e-79 300.1 187 81.3
Lj3A803G20 Lonicera japonica HOM05D006658 ORTHO05D008515 3.6e-78 296.2 268 60.1
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 6.8e-77 292.0 318 47.5
AUR62003399 Chenopodium quinoa HOM05D006658 ORTHO05D008515 4.9e-75 285.8 271 60.1
RcHm_v2.0_Chr5g0045591 Rosa chinensis HOM05D006658 ORTHO05D008515 7.1e-74 282.0 179 81.0
CDE09G1086 Ceratophyllum demersum HOM05D002356 ORTHO05D002546 1.2e-70 271.2 257 56.8
Manes.07G121800 Manihot esculenta HOM05D006658 ORTHO05D008515 1.2e-68 264.6 163 85.3
Hund26050 Selenicereus undatus HOM05D006658 ORTHO05D008515 2.4e-66 256.9 253 56.9
CSS0004357 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 7.1e-66 255.4 228 61.0
Nn1g02127 Nelumbo nucifera HOM05D006658 ORTHO05D008515 2.3e-64 250.4 200 67.5
Cre12.g533950 Chlamydomonas reinhardtii HOM05D006658 ORTHO05D008515 5.1e-56 222.6 302 39.4
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 1.9e-47 194.1 333 41.4
PRCOL_00004089 Prasinoderma coloniale HOM05D006658 ORTHO05D008515 2.4e-45 187.2 270 38.5
MCO01G250 Micromonas commoda HOM05D006658 ORTHO05D008515 3.4e-44 183.3 251 37.5
SEGI_22040 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 1.4e-42 177.9 137 66.4
Psat2g070960 Pisum sativum HOM05D006658 ORTHO05D008515 1.1e-34 151.8 240 44.6
HPP92_001340 Vanilla planifolia HOM05D006658 ORTHO05D008515 7.9e-33 145.6 105 72.4
Oeu023652.1 Olea europaea HOM05D006658 ORTHO05D008515 9.0e-29 132.1 226 42.5
Peaxi162Scf00095g00724 Petunia axillaris HOM05D006658 ORTHO05D008515 1.0e-27 128.6 204 39.2
Actinidia32371 Actinidia chinensis HOM05D006658 ORTHO05D008515 1.9e-26 124.4 84 77.4
Actinidia08452 Actinidia chinensis HOM05D006658 ORTHO05D008515 2.3e-24 117.5 84 72.6
HanXRQChr09g0256171 Helianthus annuus HOM05D006658 ORTHO05D008515 1.5e-12 78.2 61 62.3
Oeu037664.1 Olea europaea HOM05D006658 ORTHO05D008515 1.0e-11 75.5 72 51.4
HanXRQChr04g0123631 Helianthus annuus HOM05D034347 ORTHO05D227534 1.8e-08 64.7 46 67.4
Medtr2g021155 Medicago truncatula HOM05D000007 ORTHO05D000017 5.7e-07 59.7 43 67.4


User provided reference genes

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