Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G197300 Populus trichocarpa HOM05D007734 ORTHO05D009807 3.0e-38 161.4 84 100.0
Sabra08G0163100 Salix brachista HOM05D007734 ORTHO05D009807 1.8e-35 152.1 84 94.0
Potri.010G026900 Populus trichocarpa HOM05D007734 ORTHO05D009807 3.6e-31 137.9 85 84.7
Manes.03G189200 Manihot esculenta HOM05D007734 ORTHO05D009807 9.2e-27 123.2 78 75.6
GSVIVG01017837001 Vitis vinifera HOM05D007734 ORTHO05D009807 9.2e-27 123.2 77 79.2
Eucgr.H03661 Eucalyptus grandis HOM05D007734 ORTHO05D009807 2.3e-25 118.6 78 74.4
MD13G1176100 Malus domestica HOM05D007734 ORTHO05D009807 3.9e-25 117.9 82 69.5
Duzib151G0459 Durio zibethinus HOM05D007734 ORTHO05D009807 6.6e-25 117.1 77 71.4
QL06p006592 Quercus lobata HOM05D007734 ORTHO05D009807 6.6e-25 117.1 77 74.0
TWI73G0877 Tripterygium wilfordii HOM05D007734 ORTHO05D009807 6.6e-25 117.1 78 71.8
Ciclev10007097m.g Citrus clementina HOM05D007734 ORTHO05D009807 8.6e-25 116.7 79 70.9
MD16G1177900 Malus domestica HOM05D007734 ORTHO05D009807 8.6e-25 116.7 82 67.1
Thecc.04G274000 Theobroma cacao HOM05D007734 ORTHO05D009807 8.6e-25 116.7 81 69.1
FAN07G1074 Fragaria x ananassa HOM05D007734 ORTHO05D009807 1.5e-24 115.9 76 71.1
Glyma.17G021500 Glycine max HOM05D007734 ORTHO05D009807 1.9e-24 115.5 78 69.2
Hma1.2p1_0643F.1_g194590 Hydrangea macrophylla HOM05D007734 ORTHO05D009807 1.9e-24 115.5 80 71.2
Cfa015520 Carpinus fangiana HOM05D007734 ORTHO05D009807 2.5e-24 115.2 78 69.2
CiPaw.02G088300 Carya illinoinensis HOM05D007734 ORTHO05D009807 2.5e-24 115.2 77 68.8
FvH4_4g16860 Fragaria vesca HOM05D007734 ORTHO05D009807 2.5e-24 115.2 77 70.1
FAN12G2573 Fragaria x ananassa HOM05D007734 ORTHO05D009807 2.5e-24 115.2 77 70.1
Prupe.1G145200 Prunus persica HOM05D007734 ORTHO05D009807 2.5e-24 115.2 82 65.9
CANSAT78G1562 Cannabis sativa HOM05D007734 ORTHO05D009807 4.3e-24 114.4 77 71.4
Duzib052G0038 Durio zibethinus HOM05D007734 ORTHO05D009807 4.3e-24 114.4 77 70.1
FAN17G2648 Fragaria x ananassa HOM05D007734 ORTHO05D009807 4.3e-24 114.4 76 71.1
Glyma.07G252900 Glycine max HOM05D007734 ORTHO05D009807 4.3e-24 114.4 78 69.2
RcHm_v2.0_Chr4g0420431 Rosa chinensis HOM05D007734 ORTHO05D009807 5.6e-24 114.0 76 71.1
CiPaw.01G155700 Carya illinoinensis HOM05D007734 ORTHO05D009807 9.5e-24 113.2 77 68.8
TWI09G1295 Tripterygium wilfordii HOM05D007734 ORTHO05D009807 9.5e-24 113.2 78 71.8
FAN12G0936 Fragaria x ananassa HOM05D007734 ORTHO05D009807 1.6e-23 112.5 77 67.5
Sed0021110 Sechium edule HOM05D007734 ORTHO05D009807 1.6e-23 112.5 74 74.3
Haze_01029 Corylus avellana HOM05D007734 ORTHO05D009807 2.1e-23 112.1 78 67.9
Lj4g0025137 Lotus japonicus HOM05D007734 ORTHO05D009807 2.1e-23 112.1 78 69.2
ClCG06G005560 Citrullus lanatus HOM05D007734 ORTHO05D009807 2.8e-23 111.7 72 72.2
MELO3C021378.2 Cucumis melo HOM05D007734 ORTHO05D009807 4.7e-23 110.9 74 68.9
CsaV3_6G005600 Cucumis sativus L. HOM05D007734 ORTHO05D009807 6.2e-23 110.5 72 70.8
Sed0016523 Sechium edule HOM05D007734 ORTHO05D009807 6.2e-23 110.5 72 75.0
Atru.chr4.2717 Acer truncatum HOM05D007734 ORTHO05D009807 8.1e-23 110.2 73 72.6
Aa31LG11G10850 Aethionema arabicum HOM05D007734 ORTHO05D009807 1.1e-22 109.8 81 63.0
Gorai.006G074800 Gossypium raimondii HOM05D007734 ORTHO05D009807 1.1e-22 109.8 77 66.2
Gohir.D10G164200 Gossypium hirsutum HOM05D007734 ORTHO05D009807 1.8e-22 109.0 75 68.0
Gorai.011G183300 Gossypium raimondii HOM05D007734 ORTHO05D009807 1.8e-22 109.0 75 68.0
Phvul.003G099200 Phaseolus vulgaris HOM05D007734 ORTHO05D009807 1.8e-22 109.0 78 66.7
Migut.G00233 Erythranthe guttata HOM05D007734 ORTHO05D009807 2.3e-22 108.6 81 65.4
Gohir.D09G060100 Gossypium hirsutum HOM05D007734 ORTHO05D009807 3.1e-22 108.2 77 64.9
arahy.Tifrunner.gnm1.ann1.80YKV9 Arachis hypogaea HOM05D007734 ORTHO05D009807 5.2e-22 107.5 86 60.5
arahy.Tifrunner.gnm1.ann1.F9B3QK Arachis hypogaea HOM05D007734 ORTHO05D009807 5.2e-22 107.5 86 60.5
Gohir.A10G104500 Gossypium hirsutum HOM05D007734 ORTHO05D009807 8.9e-22 106.7 75 66.7
Nn4g26101 Nelumbo nucifera HOM05D007734 ORTHO05D009807 2.0e-21 105.5 79 63.3
AT5G18850 Arabidopsis thaliana HOM05D007734 ORTHO05D009807 2.6e-21 105.1 80 62.5
Dinv44448 Davidia involucrata HOM05D007734 ORTHO05D009807 3.4e-21 104.8 74 74.3
Gohir.A09G061200 Gossypium hirsutum HOM05D007734 ORTHO05D009807 3.4e-21 104.8 77 64.9
Peaxi162Scf00095g00125 Petunia axillaris HOM05D007734 ORTHO05D009807 3.4e-21 104.8 76 65.8
Thhalv10015120m.g Eutrema salsugineum HOM05D007734 ORTHO05D009807 1.3e-20 102.8 78 64.1
Oeu044804.1 Olea europaea HOM05D007734 ORTHO05D009807 1.3e-20 102.8 78 64.1
AL6G30210 Arabidopsis lyrata HOM05D007734 ORTHO05D009807 1.7e-20 102.4 80 61.2
TAR365G0453 Trochodendron aralioides HOM05D007734 ORTHO05D009807 2.2e-20 102.1 78 64.1
Sp6g25520 Schrenkiella parvula HOM05D007734 ORTHO05D009807 2.9e-20 101.7 82 63.4
SGA_v2.0_scaffold142G35667 Striga asiatica HOM05D007734 ORTHO05D009807 2.9e-20 101.7 81 58.0
Carub.0006s1717 Capsella rubella HOM05D007734 ORTHO05D009807 4.9e-20 100.9 82 61.0
PSO302G0168 Papaver somniferum HOM05D007734 ORTHO05D009807 4.9e-20 100.9 72 66.7
CSS0028590 Camellia sinensis var. sinensis HOM05D007734 ORTHO05D009807 8.3e-20 100.1 78 64.1
CDE05G0384 Ceratophyllum demersum HOM05D007734 ORTHO05D009807 8.3e-20 100.1 79 62.0
BraA03t10238Z Brassica rapa HOM05D007734 ORTHO05D009807 1.1e-19 99.8 82 61.0
CARHR194160 Cardamine hirsuta HOM05D007734 ORTHO05D009807 1.4e-19 99.4 72 65.3
Nitab4.5_0009396g0030 Nicotiana tabacum HOM05D007734 ORTHO05D009807 1.4e-19 99.4 72 65.3
Ca_30429_v3 Cicer arietinum L. HOM05D007734 ORTHO05D009807 1.9e-19 99.0 78 62.8
CAN.G627.13 Capsicum annuum HOM05D007734 ORTHO05D009807 2.4e-19 98.6 76 61.8
BcaB01g05276 Brassica carinata HOM05D007734 ORTHO05D009807 3.2e-19 98.2 73 65.8
C03p10680 Brassica napus HOM05D007734 ORTHO05D009807 3.2e-19 98.2 73 65.8
BolC3t13544H Brassica oleracea HOM05D007734 ORTHO05D009807 3.2e-19 98.2 73 65.8
MBI19_g13511_MAGBIO Magnolia biondii HOM05D007734 ORTHO05D009807 4.1e-19 97.8 72 62.5
BcaB01g04888 Brassica carinata HOM05D007734 ORTHO05D009807 1.2e-18 96.3 73 65.8
Cc03_g02610 Coffea canephora HOM05D007734 ORTHO05D009807 4.6e-18 94.4 72 65.3
PGSC0003DMG400032093 Solanum tuberosum HOM05D007734 ORTHO05D009807 7.8e-18 93.6 66 68.2
Actinidia40206 Actinidia chinensis HOM05D007734 ORTHO05D009807 1.0e-17 93.2 72 62.5
Solyc01g080590.3 Solanum lycopersicum HOM05D007734 ORTHO05D009807 1.3e-17 92.8 66 68.2
Sopen01g032410 Solanum pennellii HOM05D007734 ORTHO05D009807 1.7e-17 92.4 66 68.2
Lalb_Chr07g0177521 Lupinus albus HOM05D007734 ORTHO05D009807 2.3e-17 92.0 69 58.0
CDE05G0036 Ceratophyllum demersum HOM05D007734 ORTHO05D009807 5.1e-17 90.9 56 71.4
THA.LOC104818832 Tarenaya hassleriana HOM05D002550 ORTHO05D003420 8.6e-17 90.1 78 57.7
Psat4g030040 Pisum sativum HOM05D007734 ORTHO05D009807 1.1e-16 89.7 65 64.6
ATR0487G018 Amborella trichopoda HOM05D007734 ORTHO05D009807 3.3e-16 88.2 74 59.5
Aqoxy5G00589 Aquilegia oxysepala HOM05D007734 ORTHO05D009807 2.1e-15 85.5 76 59.2
MSTRG.3964 Avicennia marina HOM05D007734 ORTHO05D009807 1.4e-14 82.8 92 46.7
SEGI_32711 Sequoiadendron giganteum HOM05D007734 ORTHO05D009807 1.8e-14 82.4 78 52.6
FAN22G2010 Fragaria x ananassa HOM05D007734 ORTHO05D001690 1.1e-11 73.2 49 73.5
Nitab4.5_0000059g0330 Nicotiana tabacum HOM05D007734 ORTHO05D009807 1.0e-09 66.6 55 56.4
Sc13g0003750 Simmondsia chinensis HOM05D007734 ORTHO05D009807 1.7e-09 65.9 50 64.0
Actinidia00065 Actinidia chinensis HOM05D007734 ORTHO05D009807 6.6e-09 63.9 69 47.8
A03p09150 Brassica napus HOM05D007734 ORTHO05D009807 3.3e-08 61.6 51 58.8
BcaB08g36639 Brassica carinata HOM05D007734 ORTHO05D009807 2.4e-06 55.5 41 61.0


User provided reference genes

Program Settings