Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G195300 Populus trichocarpa HOM05D007369 ORTHO05D009369 4.5e-225 784.3 395 100.0
Cfa015498 Carpinus fangiana HOM05D007369 ORTHO05D009369 8.8e-128 461.1 399 62.4
Manes.15G017400 Manihot esculenta HOM05D007369 ORTHO05D009369 3.9e-120 435.6 417 56.6
QL06p007318 Quercus lobata HOM05D007369 ORTHO05D009369 7.0e-117 424.9 429 56.9
Thecc.04G277200 Theobroma cacao HOM05D007369 ORTHO05D009369 9.1e-117 424.5 423 55.1
CiPaw.02G086900 Carya illinoinensis HOM05D007369 ORTHO05D009369 7.7e-116 421.4 399 57.6
Dinv38329 Davidia involucrata HOM05D007369 ORTHO05D009369 5.5e-114 415.2 434 54.4
Prupe.1G142600 Prunus persica HOM05D007369 ORTHO05D009369 1.6e-108 397.1 435 52.0
MD13G1174200 Malus domestica HOM05D007369 ORTHO05D009369 1.2e-105 387.5 427 51.8
Hma1.2p1_0078F.1_g040800 Hydrangea macrophylla HOM05D007369 ORTHO05D009369 2.7e-105 386.3 397 53.7
Manes.03G190800 Manihot esculenta HOM05D007369 ORTHO05D009369 6.1e-105 385.2 361 59.8
Gorai.006G075300 Gossypium raimondii HOM05D007369 ORTHO05D009369 8.8e-104 381.3 419 50.6
Gohir.D09G060700 Gossypium hirsutum HOM05D007369 ORTHO05D009369 1.5e-103 380.6 399 52.6
TAR636G2558 Trochodendron aralioides HOM05D007369 ORTHO05D009369 2.0e-103 380.2 444 50.2
RcHm_v2.0_Chr4g0420931 Rosa chinensis HOM05D007369 ORTHO05D009369 5.7e-103 378.6 395 52.9
Duzib052G0382 Durio zibethinus HOM05D007369 ORTHO05D009369 1.4e-101 374.0 413 50.6
Ciclev10005057m.g Citrus clementina HOM05D007369 ORTHO05D009369 2.7e-100 369.8 433 50.8
Haze_01056 Corylus avellana HOM05D007369 ORTHO05D009369 5.9e-100 368.6 436 51.1
Gohir.A09G061800 Gossypium hirsutum HOM05D007369 ORTHO05D009369 3.6e-97 359.4 399 50.6
COL.COLO4_13933 Corchorus olitorius HOM05D007369 ORTHO05D009369 3.0e-96 356.3 496 44.4
FvH4_4g17160 Fragaria vesca HOM05D007369 ORTHO05D009369 5.7e-95 352.1 397 52.1
FAN12G1425 Fragaria x ananassa HOM05D007369 ORTHO05D009369 7.5e-95 351.7 397 52.1
Duzib151G0340 Durio zibethinus HOM05D007369 ORTHO05D009369 1.7e-94 350.5 423 47.3
Potri.010G031250 Populus trichocarpa HOM05D007369 ORTHO05D009369 8.3e-94 348.2 212 83.5
FAN12G3176 Fragaria x ananassa HOM05D007369 ORTHO05D009369 1.1e-93 347.8 397 51.9
GSVIVG01017812001 Vitis vinifera HOM05D007369 ORTHO05D009369 1.8e-93 347.1 416 49.0
CSS0015973 Camellia sinensis var. sinensis HOM05D007369 ORTHO05D009369 7.7e-92 341.7 438 49.3
Actinidia40222 Actinidia chinensis HOM05D007369 ORTHO05D009369 4.2e-90 335.9 406 49.0
FAN17G0929 Fragaria x ananassa HOM05D007369 ORTHO05D009369 2.1e-89 333.6 401 50.6
Nn3g21294 Nelumbo nucifera HOM05D007369 ORTHO05D009369 4.7e-89 332.4 408 50.0
FAN07G2486 Fragaria x ananassa HOM05D007369 ORTHO05D009369 6.1e-89 332.0 397 50.6
Rhsim04G0215900 Rhododendron simsii HOM05D007369 ORTHO05D009369 7.0e-85 318.5 443 46.0
VMungo0540G1702 Vigna mungo HOM05D007369 ORTHO05D009369 1.3e-83 314.3 433 44.3
Actinidia23432 Actinidia chinensis HOM05D007369 ORTHO05D009369 1.6e-81 307.4 424 45.8
Sabra08G0148500 Salix brachista HOM05D007369 ORTHO05D009369 3.6e-81 306.2 171 91.8
Lalb_Chr18g0055751 Lupinus albus HOM05D007369 ORTHO05D009369 8.0e-81 305.1 429 42.7
CANSAT78G0356 Cannabis sativa HOM05D007369 ORTHO05D009369 1.8e-80 303.9 407 45.5
Phvul.006G161000 Phaseolus vulgaris HOM05D007369 ORTHO05D009369 2.9e-78 296.6 426 44.6
Glyma.13G214800 Glycine max HOM05D007369 ORTHO05D009369 9.2e-77 291.6 427 43.3
FAN22G0049 Fragaria x ananassa HOM05D007369 ORTHO05D009369 2.0e-76 290.4 397 46.3
Aqoxy2G03087 Aquilegia oxysepala HOM05D007369 ORTHO05D009369 1.3e-75 287.7 407 45.2
Oeu044796.2 Olea europaea HOM05D007369 ORTHO05D009369 1.9e-74 283.9 428 41.6
TPR.G37368 Trifolium pratense HOM05D007369 ORTHO05D009369 3.3e-74 283.1 428 42.1
Dinv44429 Davidia involucrata HOM05D007369 ORTHO05D009369 5.6e-74 282.3 345 49.0
Nn4g26033 Nelumbo nucifera HOM05D007369 ORTHO05D009369 3.6e-73 279.6 397 43.6
ATR0706G035 Amborella trichopoda HOM05D007369 ORTHO05D009369 1.2e-71 274.6 448 40.2
Medtr8g093650 Medicago truncatula HOM05D007369 ORTHO05D009369 9.2e-69 265.0 461 37.3
Eucgr.B01264 Eucalyptus grandis HOM05D007369 ORTHO05D009369 6.6e-67 258.8 416 40.9
Glyma.15G098300 Glycine max HOM05D007369 ORTHO05D009369 1.9e-66 257.3 428 40.4
arahy.Tifrunner.gnm1.ann1.IR05CW Arachis hypogaea HOM05D007369 ORTHO05D009369 5.6e-66 255.8 408 40.7
TWI73G1273 Tripterygium wilfordii HOM05D007369 ORTHO05D009369 2.6e-63 246.9 232 57.3
arahy.Tifrunner.gnm1.ann1.ED76E0 Arachis hypogaea HOM05D007369 ORTHO05D009369 3.4e-63 246.5 396 40.7
Sopen01g029630 Solanum pennellii HOM05D007369 ORTHO05D009369 4.4e-63 246.1 429 38.7
Psat1g187040 Pisum sativum HOM05D007369 ORTHO05D009369 5.8e-63 245.7 490 35.9
Cc03_g02400 Coffea canephora HOM05D007369 ORTHO05D009369 3.7e-62 243.0 404 42.1
CAN.G223.8 Capsicum annuum HOM05D007369 ORTHO05D009369 3.2e-61 240.0 433 38.3
Sed0026345 Sechium edule HOM05D007369 ORTHO05D009369 3.2e-61 240.0 370 42.2
SalBow2G2600 Salvia bowleyana HOM05D007369 ORTHO05D009369 2.1e-60 237.3 400 40.0
MBI19_g37517_MAGBIO Magnolia biondii HOM05D007369 ORTHO05D009369 6.0e-60 235.7 445 36.6
Ca_17638_v3 Cicer arietinum L. HOM05D007369 ORTHO05D009369 7.8e-60 235.3 482 34.9
ClCG05G005770 Citrullus lanatus HOM05D007369 ORTHO05D009369 3.9e-59 233.0 356 42.4
vmacro08206 Vaccinium macrocarpon HOM05D007369 ORTHO05D009369 8.6e-59 231.9 457 36.8
CsaV3_3G014100 Cucumis sativus L. HOM05D007369 ORTHO05D009369 2.1e-57 227.3 373 40.8
Nitab4.5_0003067g0040 Nicotiana tabacum HOM05D007369 ORTHO05D009369 6.2e-57 225.7 405 38.3
SGA_v2.0_scaffold57G20253 Striga asiatica HOM05D007369 ORTHO05D009369 2.4e-53 213.8 399 37.8
Solyc01g067700.3 Solanum lycopersicum HOM05D007369 ORTHO05D009369 4.6e-52 209.5 333 39.6
Ca_00577_v3 Cicer arietinum L. HOM05D007369 ORTHO05D009369 8.7e-51 205.3 345 40.3
Oeu062882.1 Olea europaea HOM05D007369 ORTHO05D009369 1.1e-50 204.9 326 39.9
DCAR_002440 Daucus carota HOM05D007369 ORTHO05D009369 1.9e-50 204.1 305 42.0
LjContig00389g0017607 Lotus japonicus HOM05D007369 ORTHO05D009369 5.6e-50 202.6 362 38.7
MELO3C031713.2 Cucumis melo HOM05D007369 ORTHO05D009369 4.4e-47 193.0 386 38.9
Peaxi162Scf00386g00219 Petunia axillaris HOM05D007369 ORTHO05D009369 4.2e-45 186.4 330 36.4
THA.LOC104820236 Tarenaya hassleriana HOM05D007369 ORTHO05D009369 5.4e-45 186.0 315 39.4
Sc13g0003630 Simmondsia chinensis HOM05D007369 ORTHO05D009369 2.1e-44 184.1 321 40.5
Atru.chr4.2749 Acer truncatum HOM05D007369 ORTHO05D009369 2.3e-43 180.6 156 62.8
Migut.G00214 Erythranthe guttata HOM05D007369 ORTHO05D009369 2.5e-42 177.2 154 56.5
Nitab4.5_0000197g0120 Nicotiana tabacum HOM05D007369 ORTHO05D009369 2.5e-42 177.2 405 34.3
HanXRQChr03g0080111 Helianthus annuus HOM05D007369 ORTHO05D009369 6.4e-38 162.5 270 41.5
FAN17G3125 Fragaria x ananassa HOM05D007369 ORTHO05D009369 1.4e-37 161.4 129 64.3
MD16G1175500 Malus domestica HOM05D007369 ORTHO05D009369 1.9e-37 161.0 253 40.3
ECA240G2128 Erigeron canadensis HOM05D007369 ORTHO05D009369 3.0e-35 153.7 375 34.4
Atru.chr4.2750 Acer truncatum HOM05D007369 ORTHO05D009369 1.1e-34 151.8 182 46.2
Mapoly0126s0031 Marchantia polymorpha HOM05D007369 ORTHO05D009369 1.2e-31 141.7 326 33.7
MD16G1175700 Malus domestica HOM05D007369 ORTHO05D009369 2.0e-31 141.0 93 73.1
TAR365G0645 Trochodendron aralioides HOM05D007369 ORTHO05D009369 1.3e-30 138.3 247 38.9
Hund24911 Selenicereus undatus HOM05D007369 ORTHO05D009369 4.8e-25 119.8 416 29.1
Zm00001eb410560 Zea mays HOM05D007369 ORTHO05D009369 1.0e-19 102.1 373 26.5
AagrBONN_evm.TU.Sc2ySwM_362.2687 Anthoceros agrestis HOM05D007369 ORTHO05D009369 1.6e-17 94.7 126 43.7
Lsat_1_v5_gn_5_50560 Lactuca sativa HOM05D007369 ORTHO05D009369 8.2e-17 92.4 382 28.3
MD16G1175600 Malus domestica HOM05D007369 ORTHO05D009369 1.3e-14 85.1 69 65.2
Lalb_Chr20g0118161 Lupinus albus HOM05D007369 ORTHO05D009369 2.9e-14 84.0 185 34.1
SEGI_26846 Sequoiadendron giganteum HOM05D007369 ORTHO05D009369 3.9e-11 73.6 224 28.6
Lalb_Chr20g0118171 Lupinus albus HOM05D007369 ORTHO05D009369 5.7e-10 69.7 56 58.9
Mapoly0008s0171 Marchantia polymorpha HOM05D007369 ORTHO05D009369 2.2e-09 67.8 210 29.0
HanXRQChr03g0080081 Helianthus annuus HOM05D007369 ORTHO05D009369 2.8e-09 67.4 179 32.4


User provided reference genes

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