Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 6.0e-98 360.9 193 100.0
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 1.2e-74 283.5 195 83.1
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.8e-73 279.6 195 82.6
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 6.1e-66 254.6 195 70.3
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 1.4e-65 253.4 195 71.8
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 1.5e-64 250.0 195 73.8
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 1.5e-64 250.0 195 71.8
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 2.0e-64 249.6 194 70.6
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 7.4e-64 247.7 194 72.7
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 7.4e-64 247.7 195 74.4
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 7.4e-64 247.7 195 71.8
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 3.7e-63 245.4 195 71.8
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 4.8e-63 245.0 195 71.3
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 6.3e-63 244.6 195 69.7
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 2.4e-62 242.7 195 69.2
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 2.0e-61 239.6 195 69.2
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 2.9e-60 235.7 195 67.7
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 3.8e-60 235.3 195 68.7
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 1.9e-59 233.0 198 66.7
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.5e-59 232.6 195 68.7
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 5.5e-59 231.5 195 68.7
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 1.2e-58 230.3 195 67.2
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 1.6e-58 229.9 195 66.7
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 2.1e-58 229.6 195 68.7
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 2.7e-58 229.2 195 67.2
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 3.6e-58 228.8 195 68.2
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 8.0e-58 227.6 195 67.7
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 8.0e-58 227.6 195 68.7
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 8.0e-58 227.6 195 67.2
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 1.0e-57 227.3 195 66.2
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 8.8e-57 224.2 195 65.6
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 8.8e-57 224.2 194 66.5
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.5e-56 223.4 195 66.7
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 2.0e-56 223.0 195 68.2
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 5.7e-56 221.5 195 64.6
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 7.4e-56 221.1 195 67.7
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 1.3e-55 220.3 242 58.3
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 2.2e-55 219.5 195 68.7
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 8.2e-55 217.6 195 64.6
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.6e-53 213.4 195 63.1
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 1.6e-53 213.4 228 58.8
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 4.5e-53 211.8 195 65.1
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 5.9e-53 211.5 195 64.1
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 1.0e-52 210.7 195 64.6
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.3e-52 210.3 195 64.1
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 2.2e-52 209.5 195 65.1
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 3.8e-52 208.8 195 64.1
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 3.8e-52 208.8 194 63.9
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 3.8e-52 208.8 195 63.6
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 3.8e-52 208.8 196 62.2
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 6.5e-52 208.0 195 65.6
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 8.5e-52 207.6 195 62.6
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 1.5e-51 206.8 195 63.6
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 4.2e-51 205.3 195 63.6
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 4.2e-51 205.3 195 63.1
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 4.2e-51 205.3 195 63.1
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 7.2e-51 204.5 195 61.5
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 2.1e-50 203.0 195 64.6
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 6.1e-50 201.4 204 61.3
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 1.0e-49 200.7 195 60.5
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 1.0e-49 200.7 195 61.0
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 1.4e-49 200.3 196 61.2
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.4e-49 200.3 207 60.4
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.8e-49 199.9 195 62.6
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 3.0e-49 199.1 195 60.5
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 3.0e-49 199.1 198 59.1
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 4.0e-49 198.7 195 62.6
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 2.0e-48 196.4 193 63.2
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 3.4e-48 195.7 194 58.8
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 7.5e-48 194.5 199 60.8
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 9.7e-48 194.1 196 60.2
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 9.7e-48 194.1 193 62.2
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 1.3e-47 193.7 192 60.4
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 2.8e-47 192.6 192 59.4
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 6.3e-47 191.4 193 59.6
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 6.3e-47 191.4 195 59.0
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 8.3e-47 191.0 196 60.2
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 1.1e-46 190.7 195 57.9
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 1.1e-46 190.7 193 61.7
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 1.4e-46 190.3 195 62.6
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 3.1e-46 189.1 195 61.5
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 1.2e-45 187.2 195 56.9
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 1.6e-45 186.8 193 56.0
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 2.7e-45 186.0 195 57.4
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 2.7e-45 186.0 193 59.6
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 3.5e-45 185.7 195 56.4
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 7.7e-45 184.5 195 56.4
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 7.7e-45 184.5 195 56.4
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 7.7e-45 184.5 195 56.4
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 1.7e-44 183.3 195 56.9
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 1.7e-44 183.3 195 56.9
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 2.2e-44 183.0 194 58.8
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 2.9e-44 182.6 172 62.8
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 3.8e-44 182.2 193 54.9
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 3.8e-44 182.2 195 55.9
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 1.1e-43 180.6 195 56.4
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 3.2e-43 179.1 194 57.2
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 4.2e-43 178.7 195 58.5
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 5.5e-43 178.3 193 58.0
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 7.2e-43 177.9 195 55.9
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 7.2e-43 177.9 189 57.1
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 9.4e-43 177.6 195 57.4
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 9.4e-43 177.6 195 56.4
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 2.1e-42 176.4 197 55.3
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 1.8e-41 173.3 201 55.7
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 3.4e-40 169.1 176 56.8
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 4.4e-40 168.7 189 55.0
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 5.7e-40 168.3 195 53.3
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 3.7e-39 165.6 171 56.1
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 6.3e-39 164.9 171 59.6
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 8.3e-39 164.5 171 59.6
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.4e-38 163.7 176 59.7
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 2.4e-38 162.9 173 57.8
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 5.4e-38 161.8 195 52.3
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 2.7e-37 159.5 195 54.9
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 1.0e-36 157.5 173 56.1
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.3e-36 157.1 191 55.0
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 1.7e-36 156.8 195 53.8
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 6.6e-36 154.8 198 51.0
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 7.2e-35 151.4 209 48.8
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 1.0e-33 147.5 180 52.2
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 2.3e-33 146.4 173 53.2
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 5.7e-32 141.7 185 49.2
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 1.7e-31 140.2 182 52.2
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 6.3e-31 138.3 183 51.4
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 3.2e-30 136.0 190 48.4
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 2.5e-27 126.3 191 44.0
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 6.1e-26 121.7 137 56.2
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 4.0e-25 119.0 136 55.9
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 1.2e-24 117.5 182 46.2
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 1.5e-19 100.5 138 49.3
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 1.9e-19 100.1 185 38.9
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 1.6e-18 97.1 183 39.3
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 3.4e-16 89.4 136 44.9
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 1.3e-15 87.4 106 51.9
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 1.7e-15 87.0 190 36.8
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 1.7e-15 87.0 137 48.2
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 1.1e-14 84.3 60 73.3
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 1.1e-09 67.8 58 55.2
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 1.8e-09 67.0 182 34.6
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 3.1e-09 66.2 58 56.9
Aqoxy4G02344 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 3.4e-08 62.8 74 48.6
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 5.8e-08 62.0 47 61.7
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 3.7e-07 59.3 48 68.8


User provided reference genes

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