Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G186700 Populus trichocarpa HOM05D002002 ORTHO05D003658 1.1e-113 413.3 204 100.0
Potri.010G046225 Populus trichocarpa HOM05D002002 ORTHO05D003658 7.1e-89 330.9 204 81.4
Manes.13G024400 Manihot esculenta HOM05D002002 ORTHO05D003658 2.4e-68 262.7 207 65.2
Thecc.02G259800 Theobroma cacao HOM05D002002 ORTHO05D003658 1.7e-63 246.5 213 60.6
Manes.12G023250 Manihot esculenta HOM05D002002 ORTHO05D003658 1.1e-62 243.8 207 60.4
COL.COLO4_24276 Corchorus olitorius HOM05D002002 ORTHO05D008711 2.9e-58 229.2 215 55.3
Gohir.D02G158850 Gossypium hirsutum HOM05D002002 ORTHO05D003658 1.9e-57 226.5 213 53.1
MD13G1101500 Malus domestica HOM05D002002 ORTHO05D003658 2.7e-56 222.6 213 54.9
Atru.chr11.2098 Acer truncatum HOM05D002002 ORTHO05D003658 6.0e-56 221.5 210 56.2
Ciclev10033784m.g Citrus clementina HOM05D002002 ORTHO05D003658 6.0e-56 221.5 204 55.9
Actinidia15095 Actinidia chinensis HOM05D002002 ORTHO05D003658 6.9e-52 208.0 188 54.8
Prupe.1G244300 Prunus persica HOM05D002002 ORTHO05D003658 1.7e-50 203.4 219 53.4
FAN02G4604 Fragaria x ananassa HOM05D002002 ORTHO05D003658 7.1e-49 198.0 214 52.8
RcHm_v2.0_Chr4g0432961 Rosa chinensis HOM05D002002 ORTHO05D008711 7.1e-49 198.0 196 55.1
Cpa.g.sc33.19 Carica papaya HOM05D002002 ORTHO05D008711 1.6e-48 196.8 205 51.7
CANSAT01G1710 Cannabis sativa HOM05D002002 ORTHO05D003658 2.7e-48 196.1 200 52.5
FAN05G0600 Fragaria x ananassa HOM05D002002 ORTHO05D003658 4.6e-48 195.3 214 52.8
FAN05G4965 Fragaria x ananassa HOM05D002002 ORTHO05D003658 4.6e-48 195.3 214 52.8
FAN14G2025 Fragaria x ananassa HOM05D002002 ORTHO05D003658 6.0e-48 194.9 210 52.9
Dinv24784 Davidia involucrata HOM05D002002 ORTHO05D003658 3.9e-47 192.2 160 61.2
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 5.1e-47 191.8 217 53.0
Eucgr.B03286 Eucalyptus grandis HOM05D002002 ORTHO05D003658 2.1e-45 186.4 219 45.7
Hma1.2p1_0160F.1_g071270 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 3.7e-45 185.7 204 52.9
CSS0040170 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D003658 4.8e-45 185.3 204 51.5
FvH4_6g24840 Fragaria vesca HOM05D002002 ORTHO05D003658 4.1e-44 182.2 203 51.2
TWI36G0682 Tripterygium wilfordii HOM05D002002 ORTHO05D003658 1.2e-43 180.6 173 56.1
Oeu056712.1 Olea europaea HOM05D002002 ORTHO05D013431 2.0e-43 179.9 200 48.5
Lj6P812T18 Lonicera japonica HOM05D002002 ORTHO05D003658 4.5e-43 178.7 175 54.3
PGR102G0007 Punica granatum HOM05D002002 ORTHO05D003658 4.5e-43 178.7 221 48.4
Cc11_g15730 Coffea canephora HOM05D002002 ORTHO05D008711 5.9e-43 178.3 213 45.5
DCAR_031154 Daucus carota HOM05D002002 ORTHO05D003658 6.5e-42 174.9 202 46.5
DCAR_024430 Daucus carota HOM05D002002 ORTHO05D008711 4.2e-41 172.2 202 47.5
Lj3C1058T7 Lonicera japonica HOM05D002002 ORTHO05D008711 5.5e-41 171.8 227 46.3
ECA233G4313 Erigeron canadensis HOM05D002002 ORTHO05D008711 2.3e-39 166.4 203 43.8
Gohir.A03G135305 Gossypium hirsutum HOM05D002002 ORTHO05D003658 1.1e-38 164.1 137 55.5
Lj2g0007304 Lotus japonicus HOM05D002002 ORTHO05D003658 4.3e-38 162.2 242 40.5
Peaxi162Scf00128g00135 Petunia axillaris HOM05D002002 ORTHO05D008711 5.3e-36 155.2 192 45.3
Glyma.01G025900 Glycine max HOM05D002002 ORTHO05D003658 4.5e-35 152.1 244 37.7
Sopen05g008380 Solanum pennellii HOM05D002002 ORTHO05D003658 2.9e-34 149.4 204 41.2
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 1.1e-33 147.5 185 44.9
MBI10_g11201_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 1.1e-33 147.5 208 41.3
Lj4g0014379 Lotus japonicus HOM05D002002 ORTHO05D003658 1.9e-33 146.7 276 35.1
Nitab4.5_0000007g0050 Nicotiana tabacum HOM05D002002 ORTHO05D008711 2.5e-33 146.4 167 46.1
Aqoxy5G03765 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 3.6e-32 142.5 205 39.0
CAN.G832.2 Capsicum annuum HOM05D002002 ORTHO05D008711 6.1e-32 141.7 193 43.0
Phvul.003G065000 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 6.1e-32 141.7 284 34.9
Oeu023068.1 Olea europaea HOM05D002002 ORTHO05D003658 1.4e-31 140.6 191 42.4
VMungo0251G0889 Vigna mungo HOM05D002002 ORTHO05D003658 6.7e-31 138.3 281 35.2
TPR.G17746 Trifolium pratense HOM05D002002 ORTHO05D003658 1.1e-30 137.5 231 37.2
Glyma.02G038900 Glycine max HOM05D002002 ORTHO05D003658 2.6e-30 136.3 259 35.1
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 7.4e-30 134.8 206 37.9
Migut.K00599 Erythranthe guttata HOM05D002002 ORTHO05D003658 1.7e-29 133.7 192 38.5
Migut.E00200 Erythranthe guttata HOM05D002002 ORTHO05D003658 8.2e-29 131.3 197 41.1
Phvul.002G149900 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 1.1e-28 131.0 257 35.4
Nitab4.5_0003609g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008711 1.5e-27 127.1 151 45.7
ATR0824G058 Amborella trichopoda HOM05D002002 ORTHO05D003658 2.0e-27 126.7 170 42.9
QL03p058095 Quercus lobata HOM05D002002 ORTHO05D003658 7.7e-27 124.8 156 47.4
Psat2g100360 Pisum sativum HOM05D002002 ORTHO05D003658 1.0e-23 114.4 180 39.4
TAR374G1279 Trochodendron aralioides HOM05D002002 ORTHO05D003658 1.1e-22 110.9 107 47.7
MELO3C010690.2 Cucumis melo HOM05D002002 ORTHO05D003658 6.3e-21 105.1 250 32.8
ClCG08G017700 Citrullus lanatus HOM05D002002 ORTHO05D003658 2.4e-20 103.2 194 35.1
Sed0021898 Sechium edule HOM05D002002 ORTHO05D003658 4.1e-20 102.4 222 35.1
CsaV3_2G024930 Cucumis sativus L. HOM05D002002 ORTHO05D003658 8.5e-18 94.7 251 30.7
Oeu009141.2 Olea europaea HOM05D002002 ORTHO05D003658 1.6e-16 90.5 79 46.8
DCAR_021086 Daucus carota HOM05D002002 ORTHO05D003658 1.0e-15 87.8 189 29.6
VMungo1215G2343 Vigna mungo HOM05D000068 ORTHO05D004691 1.0e-15 87.8 146 39.0
TAR626G0223 Trochodendron aralioides HOM05D002002 ORTHO05D003658 8.8e-15 84.7 173 35.3
Migut.M00058 Erythranthe guttata HOM05D002002 ORTHO05D003658 1.2e-14 84.3 83 45.8
Oeu034272.1 Olea europaea HOM05D002002 ORTHO05D003658 1.2e-14 84.3 175 32.6
Oeu034273.1 Olea europaea HOM05D002002 ORTHO05D003658 1.2e-14 84.3 175 32.6
HanXRQChr10g0306811 Helianthus annuus HOM05D002002 ORTHO05D003658 7.5e-14 81.6 136 32.4
Prupe.3G195300 Prunus persica HOM05D002002 ORTHO05D003658 1.7e-13 80.5 181 29.8
Aqoxy6G00290 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 2.8e-13 79.7 183 27.3
DCAR_019665 Daucus carota HOM05D002002 ORTHO05D003658 4.8e-13 79.0 197 28.4
Cpa.g.sc136.48 Carica papaya HOM05D002002 ORTHO05D003658 1.1e-12 77.8 75 48.0
MD17G1118900 Malus domestica HOM05D002002 ORTHO05D003658 1.4e-12 77.4 68 51.5
Manes.12G063951 Manihot esculenta HOM05D002002 ORTHO05D003658 1.4e-12 77.4 162 30.2
CiPaw.03G283400 Carya illinoinensis HOM05D002002 ORTHO05D003658 1.8e-12 77.0 132 35.6
MBI15_g44612_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 2.4e-12 76.6 69 49.3
Potri.002G217100 Populus trichocarpa HOM05D002002 ORTHO05D003658 2.4e-12 76.6 118 31.4
TAR627G0575 Trochodendron aralioides HOM05D003572 ORTHO05D004118 2.4e-12 76.6 69 46.4
Lsat_1_v5_gn_5_122320 Lactuca sativa HOM05D002002 ORTHO05D003658 5.3e-12 75.5 170 31.8
Haze_12592 Corylus avellana HOM05D002002 ORTHO05D003658 7.0e-12 75.1 68 47.1
Nitab4.5_0013754g0020 Nicotiana tabacum HOM05D002002 ORTHO05D003658 7.0e-12 75.1 68 45.6
Actinidia35198 Actinidia chinensis HOM05D002148 ORTHO05D002547 9.1e-12 74.7 82 40.2
Migut.D01094 Erythranthe guttata HOM05D007028 ORTHO05D003658 9.1e-12 74.7 86 43.0
FvH4_6g40440 Fragaria vesca HOM05D002002 ORTHO05D003658 9.1e-12 74.7 71 45.1
FAN02G0217 Fragaria x ananassa HOM05D002002 ORTHO05D003658 9.1e-12 74.7 71 45.1
FAN09G2779 Fragaria x ananassa HOM05D002002 ORTHO05D003658 9.1e-12 74.7 71 45.1
Cc05_g02030 Coffea canephora HOM05D002002 ORTHO05D003658 1.2e-11 74.3 172 29.1
FAN05G3832 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.2e-11 74.3 71 45.1
FAN14G1296 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.2e-11 74.3 71 45.1
Nitab4.5_0001229g0060 Nicotiana tabacum HOM05D002002 ORTHO05D003658 1.2e-11 74.3 72 41.7
Peaxi162Scf00047g02117 Petunia axillaris HOM05D002002 ORTHO05D003658 1.2e-11 74.3 174 29.3
MSTRG.14910 Avicennia marina HOM05D002002 ORTHO05D003658 1.6e-11 73.9 69 42.0
Cfa014206 Carpinus fangiana HOM05D002002 ORTHO05D003658 1.6e-11 73.9 181 29.3
ECA234G3591 Erigeron canadensis HOM05D002002 ORTHO05D003658 2.0e-11 73.6 132 34.8
RcHm_v2.0_Chr2g0155671 Rosa chinensis HOM05D002002 ORTHO05D003658 2.7e-11 73.2 112 36.6
PGSC0003DMG400028833 Solanum tuberosum HOM05D002002 ORTHO05D003658 3.5e-11 72.8 171 30.4
Solyc12g006190.1 Solanum lycopersicum HOM05D002002 ORTHO05D003658 5.9e-11 72.0 73 42.5
Sopen12g002150 Solanum pennellii HOM05D002002 ORTHO05D003658 5.9e-11 72.0 73 42.5
HanXRQChr08g0235831 Helianthus annuus HOM05D007028 ORTHO05D003658 7.7e-11 71.6 80 40.0
COL.COLO4_19649 Corchorus olitorius HOM05D002002 ORTHO05D003658 1.0e-10 71.2 93 38.7
Gohir.A07G193000 Gossypium hirsutum HOM05D002002 ORTHO05D003658 1.0e-10 71.2 69 44.9
Oeu010371.1 Olea europaea HOM05D007028 ORTHO05D003658 2.9e-10 69.7 72 43.1
Gohir.D07G199350 Gossypium hirsutum HOM05D002002 ORTHO05D003658 3.8e-10 69.3 120 32.5
Gorai.001G223200 Gossypium raimondii HOM05D002002 ORTHO05D003658 3.8e-10 69.3 120 32.5
Hma1.2p1_0629F.1_g192180 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 5.0e-10 68.9 120 32.5
Thecc.01G199000 Theobroma cacao HOM05D002002 ORTHO05D003658 5.0e-10 68.9 68 45.6
Zm00001eb064330 Zea mays HOM05D002002 ORTHO05D003658 5.0e-10 68.9 138 28.3
Cc04_g04860 Coffea canephora HOM05D007028 ORTHO05D003658 8.5e-10 68.2 74 41.9
Os06g0568400 Oryza sativa ssp. japonica HOM05D007028 ORTHO05D003658 1.1e-09 67.8 74 41.9
arahy.Tifrunner.gnm1.ann1.SE9SAL Arachis hypogaea HOM05D007028 ORTHO05D003658 2.5e-09 66.6 83 39.8
Prupe.3G095700 Prunus persica HOM05D007028 ORTHO05D003658 3.2e-09 66.2 89 41.6
Aqoxy7G01883 Aquilegia oxysepala HOM05D007028 ORTHO05D003658 5.5e-09 65.5 102 39.2
Manes.11G063900 Manihot esculenta HOM05D007028 ORTHO05D003658 5.5e-09 65.5 82 41.5
Medtr5g033070 Medicago truncatula HOM05D002002 ORTHO05D003658 5.5e-09 65.5 80 42.5
Lsat_1_v5_gn_8_100120 Lactuca sativa HOM05D007028 ORTHO05D003658 9.4e-09 64.7 117 33.3
MD09G1129900 Malus domestica HOM05D002002 ORTHO05D003658 9.4e-09 64.7 178 28.7
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 1.2e-08 64.3 68 42.6
FvH4_6g28900 Fragaria vesca HOM05D007028 ORTHO05D003658 1.2e-08 64.3 78 42.3
FAN02G1822 Fragaria x ananassa HOM05D007028 ORTHO05D003658 1.2e-08 64.3 78 42.3
Zm00001eb385060 Zea mays HOM05D007028 ORTHO05D003658 1.2e-08 64.3 73 39.7
DCAR_007440 Daucus carota HOM05D007028 ORTHO05D003658 1.6e-08 63.9 75 38.7
QL05p034297 Quercus lobata HOM05D007028 ORTHO05D003658 1.6e-08 63.9 85 40.0
Migut.I00721 Erythranthe guttata HOM05D007028 ORTHO05D003658 2.1e-08 63.5 85 37.6
MD17G1220000 Malus domestica HOM05D007028 ORTHO05D003658 2.1e-08 63.5 89 39.3
MBI04_g44678_MAGBIO Magnolia biondii HOM05D007028 ORTHO05D003658 2.7e-08 63.2 77 36.4
Ca_04572_v3 Cicer arietinum L. HOM05D002002 ORTHO05D003658 3.6e-08 62.8 62 53.2
FAN05G3224 Fragaria x ananassa HOM05D007028 ORTHO05D003658 4.7e-08 62.4 68 44.1
FAN09G0870 Fragaria x ananassa HOM05D007028 ORTHO05D003658 4.7e-08 62.4 68 44.1
FAN14G4516 Fragaria x ananassa HOM05D007028 ORTHO05D003658 4.7e-08 62.4 68 44.1
ClCG09G009040 Citrullus lanatus HOM05D007028 ORTHO05D003658 6.1e-08 62.0 79 36.7
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 6.1e-08 62.0 73 38.4
QL04p067058 Quercus lobata HOM05D002002 ORTHO05D003658 8.0e-08 61.6 165 27.3
Phvul.005G180900 Phaseolus vulgaris HOM05D007028 ORTHO05D003658 1.0e-07 61.2 68 42.6
Zm00001eb210880 Zea mays HOM05D002002 ORTHO05D003658 1.0e-07 61.2 76 38.2
ATR0749G015 Amborella trichopoda HOM05D007028 ORTHO05D003658 1.4e-07 60.8 121 29.8
Ca_01026_v3 Cicer arietinum L. HOM05D007028 ORTHO05D003658 1.4e-07 60.8 73 38.4
Ciclev10017528m.g Citrus clementina HOM05D002002 ORTHO05D003658 1.4e-07 60.8 69 40.6
TPR.G38725 Trifolium pratense HOM05D002002 ORTHO05D003658 1.4e-07 60.8 75 38.7
Medtr2g104800 Medicago truncatula HOM05D007028 ORTHO05D003658 2.3e-07 60.1 73 38.4
MELO3C021015.2 Cucumis melo HOM05D007028 ORTHO05D003658 3.0e-07 59.7 68 41.2
Oeu043137.1 Olea europaea HOM05D007028 ORTHO05D003658 3.0e-07 59.7 68 41.2
Potri.014G170000 Populus trichocarpa HOM05D002002 ORTHO05D003658 3.0e-07 59.7 57 42.1
TPR.G19149 Trifolium pratense HOM05D007028 ORTHO05D003658 3.0e-07 59.7 73 39.7
Cc01_g17020 Coffea canephora HOM05D007028 ORTHO05D003658 4.0e-07 59.3 68 38.2
Cfa001903 Carpinus fangiana HOM05D007028 ORTHO05D003658 5.2e-07 58.9 73 37.0
Ciclev10027378m.g Citrus clementina HOM05D007028 ORTHO05D003658 6.8e-07 58.5 95 32.6
CsaV3_7G025940 Cucumis sativus L. HOM05D007028 ORTHO05D003658 6.8e-07 58.5 68 38.2
Migut.N00615 Erythranthe guttata HOM05D007028 ORTHO05D003658 6.8e-07 58.5 99 29.3
Os03g0844850 Oryza sativa ssp. japonica HOM05D002002 ORTHO05D003658 6.8e-07 58.5 115 33.0
Sopen03g036070 Solanum pennellii HOM05D007028 ORTHO05D003658 6.8e-07 58.5 107 29.0
Sed0022017 Sechium edule HOM05D007028 ORTHO05D003658 8.8e-07 58.2 74 36.5
Solyc03g117170.1 Solanum lycopersicum HOM05D007028 ORTHO05D003658 8.8e-07 58.2 107 28.0
Thecc.06G037900 Theobroma cacao HOM05D007028 ORTHO05D003658 8.8e-07 58.2 73 37.0
Potri.003G179600 Populus trichocarpa HOM05D007028 ORTHO05D003658 1.5e-06 57.4 80 36.2
Actinidia09481 Actinidia chinensis HOM05D007028 ORTHO05D003658 2.0e-06 57.0 68 38.2
Lsat_1_v5_gn_2_16281 Lactuca sativa HOM05D007028 ORTHO05D003658 2.0e-06 57.0 68 38.2
Peaxi162Scf00107g00204 Petunia axillaris HOM05D007028 ORTHO05D003658 2.0e-06 57.0 68 38.2
PGSC0003DMG400046108 Solanum tuberosum HOM05D007028 ORTHO05D003658 2.0e-06 57.0 159 27.0
PGSC0003DMG402014197 Solanum tuberosum HOM05D007028 ORTHO05D003658 2.0e-06 57.0 68 36.8
COL.COLO4_26654 Corchorus olitorius HOM05D007028 ORTHO05D003658 2.6e-06 56.6 68 36.8
ECA238G1648 Erigeron canadensis HOM05D007028 ORTHO05D003658 2.6e-06 56.6 68 39.7
arahy.Tifrunner.gnm1.ann1.RXM0S4 Arachis hypogaea HOM05D007028 ORTHO05D003658 3.4e-06 56.2 72 36.1
arahy.Tifrunner.gnm1.ann1.W3CHFV Arachis hypogaea HOM05D007028 ORTHO05D003658 3.4e-06 56.2 72 36.1
Ciclev10013422m.g Citrus clementina HOM05D007028 ORTHO05D003658 3.4e-06 56.2 78 37.2
Nitab4.5_0006291g0010 Nicotiana tabacum HOM05D007028 ORTHO05D003658 3.4e-06 56.2 102 30.4
Solyc09g061240.1 Solanum lycopersicum HOM05D007028 ORTHO05D003658 3.4e-06 56.2 160 26.9
VMungo1383G2132 Vigna mungo HOM05D007028 ORTHO05D003658 3.4e-06 56.2 89 33.7
Peaxi162Scf00332g00034 Petunia axillaris HOM05D007028 ORTHO05D003658 4.4e-06 55.8 102 28.4
Cpa.g.sc10.116 Carica papaya HOM05D007028 ORTHO05D003658 5.7e-06 55.5 180 27.2
Nitab4.5_0001454g0010 Nicotiana tabacum HOM05D007028 ORTHO05D003658 7.5e-06 55.1 68 36.8
Glyma.03G080500 Glycine max HOM05D007028 ORTHO05D003658 9.8e-06 54.7 76 32.9
Gohir.A05G120800 Gossypium hirsutum HOM05D007028 ORTHO05D003658 9.8e-06 54.7 73 34.2
Sopen09g023970 Solanum pennellii HOM05D007028 ORTHO05D003658 9.8e-06 54.7 160 26.2


User provided reference genes

Program Settings