Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G185000 Populus trichocarpa HOM05D007686 ORTHO05D009709 1.4e-101 374.4 257 100.0
Sabra08G0140000 Salix brachista HOM05D007686 ORTHO05D009709 5.1e-96 355.9 257 93.0
Gohir.D04G180200 Gossypium hirsutum HOM05D007686 ORTHO05D009709 2.4e-61 240.7 257 74.3
Manes.13G021400 Manihot esculenta HOM05D007686 ORTHO05D009709 4.6e-60 236.5 257 70.8
Manes.13G022000 Manihot esculenta HOM05D007686 ORTHO05D009709 1.6e-57 228.0 257 68.5
Gohir.A04G137000 Gossypium hirsutum HOM05D007686 ORTHO05D009709 3.9e-51 206.8 257 70.0
arahy.Tifrunner.gnm1.ann1.BXJH78 Arachis hypogaea HOM05D007686 ORTHO05D009709 1.3e-46 191.8 138 66.7
Lj4g0016926 Lotus japonicus HOM05D007686 ORTHO05D009709 9.5e-42 175.6 137 66.4
Medtr8g089700 Medicago truncatula HOM05D007686 ORTHO05D009709 2.3e-40 171.0 137 59.9
TWI36G0128 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 3.1e-40 170.6 257 59.1
Glyma.08G131100 Glycine max HOM05D007686 ORTHO05D009709 1.5e-39 168.3 145 60.7
Glyma.05G173932 Glycine max HOM05D007686 ORTHO05D009709 5.8e-39 166.4 145 60.0
Phvul.002G258900 Phaseolus vulgaris HOM05D007686 ORTHO05D009709 9.9e-39 165.6 143 60.1
TPR.G6255 Trifolium pratense HOM05D007686 ORTHO05D009709 8.4e-38 162.5 122 63.9
Lalb_Chr07g0185471 Lupinus albus HOM05D007686 ORTHO05D009709 5.4e-37 159.8 116 67.2
Psat7g058760 Pisum sativum HOM05D007686 ORTHO05D009709 1.6e-36 158.3 121 63.6
Gohir.A03G132900 Gossypium hirsutum HOM05D007686 ORTHO05D009709 2.7e-36 157.5 223 42.6
Ca_17785_v3 Cicer arietinum L. HOM05D007686 ORTHO05D009709 2.3e-35 154.5 122 62.3
Dinv14741 Davidia involucrata HOM05D007686 ORTHO05D009709 1.9e-34 151.4 108 66.7
Gorai.005G176400 Gossypium raimondii HOM05D007686 ORTHO05D009709 8.9e-32 142.5 230 60.9
Os07g0688100 Oryza sativa ssp. japonica HOM05D007686 ORTHO05D009709 3.5e-28 130.6 120 48.3
Thecc.02G263700 Theobroma cacao HOM05D007686 ORTHO05D009709 3.3e-26 124.0 257 54.5
TWI18G1075 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 4.3e-26 123.6 79 74.7
RcHm_v2.0_Chr4g0432731 Rosa chinensis HOM05D007686 ORTHO05D009709 7.3e-26 122.9 80 70.0
CANSAT01G2773 Cannabis sativa HOM05D007686 ORTHO05D009709 2.1e-25 121.3 78 73.1
Eucgr.H02473 Eucalyptus grandis HOM05D007686 ORTHO05D009709 2.1e-25 121.3 257 53.7
Prupe.1G242700 Prunus persica HOM05D007686 ORTHO05D009709 4.8e-25 120.2 77 72.7
FAN12G1967 Fragaria x ananassa HOM05D007686 ORTHO05D009709 1.8e-24 118.2 76 71.1
CiPaw.05G168000 Carya illinoinensis HOM05D007686 ORTHO05D009709 3.1e-24 117.5 81 67.9
PGR119G1810 Punica granatum HOM05D007686 ORTHO05D009709 3.1e-24 117.5 253 53.8
Ciclev10031251m.g Citrus clementina HOM05D007686 ORTHO05D009709 5.3e-24 116.7 80 72.5
Lsat_1_v5_gn_8_152860 Lactuca sativa HOM05D007686 ORTHO05D009709 9.0e-24 115.9 223 57.0
MD13G1103100 Malus domestica HOM05D007686 ORTHO05D009709 2.9e-22 110.9 67 74.6
Migut.K00622 Erythranthe guttata HOM05D007686 ORTHO05D009709 3.8e-22 110.5 80 63.8
HanXRQChr08g0208401 Helianthus annuus HOM05D007686 ORTHO05D009709 3.8e-22 110.5 257 52.1
Cpa.g.sc33.48 Carica papaya HOM05D007686 ORTHO05D009709 4.9e-22 110.2 83 65.1
SGA_v2.0_scaffold100G29576 Striga asiatica HOM05D007686 ORTHO05D009709 8.4e-22 109.4 81 59.3
Gorai.012G173300 Gossypium raimondii HOM05D007686 ORTHO05D009709 4.2e-21 107.1 257 54.1
CSS0050065 Camellia sinensis var. sinensis HOM05D007686 ORTHO05D009709 7.9e-20 102.8 62 75.8
ECA233G6157 Erigeron canadensis HOM05D007686 ORTHO05D009709 1.3e-19 102.1 253 52.6
Solyc06g008190.1 Solanum lycopersicum HOM05D007686 ORTHO05D009709 1.3e-19 102.1 68 72.1
Sopen06g003050 Solanum pennellii HOM05D007686 ORTHO05D009709 1.3e-19 102.1 68 72.1
CsaV3_5G030960 Cucumis sativus L. HOM05D007686 ORTHO05D009709 8.7e-19 99.4 78 61.5
CDE05G1633 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 1.9e-18 98.2 75 62.7
MD16G1103300 Malus domestica HOM05D007686 ORTHO05D009709 1.9e-18 98.2 59 76.3
MSTRG.555 Avicennia marina HOM05D007686 ORTHO05D009709 9.6e-18 95.9 66 68.2
Sed0013465 Sechium edule HOM05D007686 ORTHO05D009709 1.3e-17 95.5 77 61.0
Oeu056704.1 Olea europaea HOM05D007686 ORTHO05D009709 1.6e-17 95.1 77 61.0
SHI17831 Sapria himalayana HOM05D007686 ORTHO05D009709 1.6e-17 95.1 81 63.0
ClCG05G025900 Citrullus lanatus HOM05D007686 ORTHO05D009709 2.1e-17 94.7 75 60.0
DCAR_031167 Daucus carota HOM05D002540 ORTHO05D002672 2.1e-17 94.7 69 62.3
Lj3P1060G37 Lonicera japonica HOM05D007686 ORTHO05D009709 2.8e-17 94.4 66 65.2
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 2.8e-17 94.4 71 64.8
Rhsim12G0039200 Rhododendron simsii HOM05D007686 ORTHO05D009709 4.8e-17 93.6 58 75.9
GSVIVG01000559001 Vitis vinifera HOM05D007686 ORTHO05D009709 1.1e-16 92.4 59 74.6
Nitab4.5_0000067g0230 Nicotiana tabacum HOM05D007686 ORTHO05D009709 1.8e-16 91.7 63 66.7
COL.COLO4_23488 Corchorus olitorius HOM05D007686 ORTHO05D009709 3.1e-16 90.9 223 55.2
Nitab4.5_0001839g0010 Nicotiana tabacum HOM05D007686 ORTHO05D009709 5.3e-16 90.1 60 70.0
Hma1.2p1_0815F.1_g222720 Hydrangea macrophylla HOM05D007686 ORTHO05D009709 2.0e-15 88.2 60 68.3
Oeu049173.1 Olea europaea HOM05D007686 ORTHO05D009709 5.8e-15 86.7 112 43.8
Zm00001eb331140 Zea mays HOM05D007686 ORTHO05D009709 5.8e-15 86.7 79 50.6
AUR62011787 Chenopodium quinoa HOM05D007686 ORTHO05D009709 7.6e-15 86.3 61 65.6
QL03p056833 Quercus lobata HOM05D007686 ORTHO05D009709 3.8e-14 84.0 54 72.2
QL93p1848_0021 Quercus lobata HOM05D007686 ORTHO05D009709 3.8e-14 84.0 54 72.2
Atru.chr11.2166 Acer truncatum HOM05D007686 ORTHO05D009709 2.7e-12 77.8 53 71.7
EL10Ac7g16785 Beta vulgaris HOM05D007686 ORTHO05D009709 2.7e-12 77.8 57 64.9
Ah.10g031010 Amaranthus hybridus HOM05D007686 ORTHO05D009709 6.0e-12 76.6 54 68.5
FvH4_4g25420 Fragaria vesca HOM05D007686 ORTHO05D009709 1.0e-11 75.9 44 75.0
PSO724G0460 Papaver somniferum HOM05D007686 ORTHO05D009709 2.3e-11 74.7 55 61.8
Aqoxy2G03020 Aquilegia oxysepala HOM05D007686 ORTHO05D009709 3.0e-11 74.3 49 69.4
Aa31LG1G1760 Aethionema arabicum HOM05D007686 ORTHO05D009709 5.1e-11 73.6 256 48.0
PSO135G0590 Papaver somniferum HOM05D007686 ORTHO05D009709 1.1e-10 72.4 54 61.1
Gohir.D02G157000 Gossypium hirsutum HOM05D007686 ORTHO05D009709 2.5e-10 71.2 52 65.4
TAR383G0079 Trochodendron aralioides HOM05D007686 ORTHO05D009709 3.3e-10 70.9 47 70.2
Sp1g11590 Schrenkiella parvula HOM05D007686 ORTHO05D009709 7.4e-10 69.7 256 48.4
PGSC0003DMG400014696 Solanum tuberosum HOM05D007686 ORTHO05D009709 7.4e-10 69.7 47 70.2
AL1G24690 Arabidopsis lyrata HOM05D007686 ORTHO05D009709 9.6e-10 69.3 53 66.0
A08p32500 Brassica napus HOM05D007686 ORTHO05D009709 9.6e-10 69.3 47 68.1
BraA08t35174Z Brassica rapa HOM05D007686 ORTHO05D009709 9.6e-10 69.3 47 68.1
Carub.0001s1279 Capsella rubella HOM05D007686 ORTHO05D009709 1.3e-09 68.9 53 66.0
Peaxi162Scf00207g01213 Petunia axillaris HOM05D007686 ORTHO05D009709 1.3e-09 68.9 51 58.8
AT1G13040 Arabidopsis thaliana HOM05D007686 ORTHO05D009709 1.6e-09 68.6 256 46.5
Sc06g0009620 Simmondsia chinensis HOM05D007686 ORTHO05D009709 1.6e-09 68.6 51 62.7
THA.LOC104805275 Tarenaya hassleriana HOM05D007686 ORTHO05D009709 4.8e-09 67.0 50 66.0
BcaC05g25091 Brassica carinata HOM05D007686 ORTHO05D009709 6.2e-09 66.6 51 64.7
A06p08670 Brassica napus HOM05D002540 ORTHO05D002672 6.2e-09 66.6 256 46.1
BolC5t29774H Brassica oleracea HOM05D007686 ORTHO05D009709 6.2e-09 66.6 256 45.7
BraA06t24064Z Brassica rapa HOM05D007686 ORTHO05D009709 6.2e-09 66.6 256 46.1
PSO832G3824 Papaver somniferum HOM05D007155 ORTHO05D003034 6.2e-09 66.6 119 30.3
Carub.0002s0151 Capsella rubella HOM05D000162 ORTHO05D000090 8.2e-09 66.2 133 30.1
Thhalv10007381m.g Eutrema salsugineum HOM05D007686 ORTHO05D009709 8.2e-09 66.2 40 75.0
C05p10280 Brassica napus HOM05D002540 ORTHO05D002672 1.4e-08 65.5 256 45.3
PSO210G6432 Papaver somniferum HOM05D007155 ORTHO05D003034 3.1e-08 64.3 119 29.4
C08p15790 Brassica napus HOM05D002540 ORTHO05D002672 4.0e-08 63.9 51 58.8
BolC8t49205H Brassica oleracea HOM05D002540 ORTHO05D002672 4.0e-08 63.9 51 58.8
CARHR013370 Cardamine hirsuta HOM05D007686 ORTHO05D009709 4.0e-08 63.9 51 64.7
HPP92_012781 Vanilla planifolia HOM05D007686 ORTHO05D009709 1.5e-07 62.0 41 63.4
ATR0564G099 Amborella trichopoda HOM05D002453 ORTHO05D002107 2.6e-07 61.2 133 27.8
Cc04_g16730 Coffea canephora HOM05D002453 ORTHO05D002107 2.6e-07 61.2 133 25.6
Hma1.2p1_2917F.1_g330320 Hydrangea macrophylla HOM05D000162 ORTHO05D000090 2.6e-07 61.2 117 27.4
CAN.G941.2 Capsicum annuum HOM05D007686 ORTHO05D009709 4.5e-07 60.5 165 27.9
MBI01_g37800_MAGBIO Magnolia biondii HOM05D000891 ORTHO05D000761 2.9e-06 57.8 129 27.1


User provided reference genes

Program Settings