Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G184500 Populus trichocarpa HOM05D002540 ORTHO05D002672 5.9e-127 457.6 239 100.0
Potri.010G049000 Populus trichocarpa HOM05D002540 ORTHO05D002672 8.9e-51 204.5 359 44.0
Sabra10G0020300 Salix brachista HOM05D002540 ORTHO05D002672 3.2e-48 196.1 359 41.8
Manes.13G021900 Manihot esculenta HOM05D002540 ORTHO05D002672 5.3e-27 125.6 363 31.4
TWI18G0592 Tripterygium wilfordii HOM05D002540 ORTHO05D002672 1.0e-22 111.3 316 32.9
Gohir.D02G156900 Gossypium hirsutum HOM05D002540 ORTHO05D002672 2.3e-22 110.2 348 29.3
Gorai.005G176200 Gossypium raimondii HOM05D002540 ORTHO05D002672 3.0e-22 109.8 350 30.0
Manes.12G020800 Manihot esculenta HOM05D002540 ORTHO05D002672 1.8e-19 100.5 165 40.0
Nn3g16668 Nelumbo nucifera HOM05D002540 ORTHO05D002672 1.3e-17 94.4 166 35.5
EL10Ac2g04746 Beta vulgaris HOM05D002540 ORTHO05D002672 1.9e-16 90.5 198 33.3
Gohir.A03G132800 Gossypium hirsutum HOM05D002540 ORTHO05D002672 2.5e-16 90.1 225 33.3
ClCG05G025920 Citrullus lanatus HOM05D002540 ORTHO05D002672 5.5e-16 89.0 166 34.9
Glyma.08G131000 Glycine max HOM05D002540 ORTHO05D002672 5.5e-16 89.0 166 36.1
arahy.Tifrunner.gnm1.ann1.5Z7E3S Arachis hypogaea HOM05D002540 ORTHO05D002672 7.1e-16 88.6 166 36.7
CiPaw.06G066300 Carya illinoinensis HOM05D002540 ORTHO05D002672 1.6e-15 87.4 201 33.3
Glyma.05G173700 Glycine max HOM05D002540 ORTHO05D002672 2.1e-15 87.0 176 34.1
MELO3C011935.2 Cucumis melo HOM05D002540 ORTHO05D002672 2.7e-15 86.7 166 33.1
Ca_17786_v3 Cicer arietinum L. HOM05D002540 ORTHO05D002672 4.6e-15 85.9 200 33.5
CsaV3_5G030940 Cucumis sativus L. HOM05D002540 ORTHO05D002672 6.0e-15 85.5 166 33.1
Lj4g0011944 Lotus japonicus HOM05D002540 ORTHO05D002672 1.3e-14 84.3 166 34.9
QL03p056829 Quercus lobata HOM05D002540 ORTHO05D002672 3.0e-14 83.2 161 37.9
QL93p1848_0025 Quercus lobata HOM05D002540 ORTHO05D002672 3.0e-14 83.2 161 37.9
Ah.03g133410 Amaranthus hybridus HOM05D002540 ORTHO05D002672 6.7e-14 82.0 165 33.9
Medtr8g089695 Medicago truncatula HOM05D002540 ORTHO05D002672 6.7e-14 82.0 202 32.7
Nn4g22560 Nelumbo nucifera HOM05D002540 ORTHO05D002672 6.7e-14 82.0 119 42.9
Sed0006742 Sechium edule HOM05D002540 ORTHO05D002672 6.7e-14 82.0 201 30.3
AUR62005507 Chenopodium quinoa HOM05D002540 ORTHO05D002672 8.7e-14 81.6 283 30.0
Duzib248G0304 Durio zibethinus HOM05D002540 ORTHO05D002672 8.7e-14 81.6 358 26.8
MD16G1103400 Malus domestica HOM05D002540 ORTHO05D002672 1.5e-13 80.9 166 35.5
Psat7g058800 Pisum sativum HOM05D002540 ORTHO05D002672 1.5e-13 80.9 199 33.7
TPR.G6188 Trifolium pratense HOM05D002540 ORTHO05D002672 1.5e-13 80.9 165 35.2
VMungo0251G3089 Vigna mungo HOM05D002540 ORTHO05D002672 1.5e-13 80.9 321 27.1
CANSAT01G0711 Cannabis sativa HOM05D002540 ORTHO05D002672 1.9e-13 80.5 336 26.8
Ciclev10032017m.g Citrus clementina HOM05D002540 ORTHO05D002672 1.9e-13 80.5 318 32.4
Aqoxy5G03701 Aquilegia oxysepala HOM05D002540 ORTHO05D002672 3.3e-13 79.7 166 34.3
Duzib251G0206 Durio zibethinus HOM05D002540 ORTHO05D002672 3.3e-13 79.7 184 33.2
SalBow2G1908 Salvia bowleyana HOM05D002540 ORTHO05D002672 3.3e-13 79.7 165 33.9
Prupe.1G242600 Prunus persica HOM05D002540 ORTHO05D002672 5.7e-13 79.0 337 30.9
COL.COLO4_23490 Corchorus olitorius HOM05D002540 ORTHO05D002672 7.4e-13 78.6 219 32.0
Sc11g0000870 Simmondsia chinensis HOM05D002540 ORTHO05D002672 7.4e-13 78.6 165 32.7
Actinidia15109 Actinidia chinensis HOM05D002540 ORTHO05D002672 1.3e-12 77.8 166 32.5
Thecc.02G263800 Theobroma cacao HOM05D002540 ORTHO05D002672 1.3e-12 77.8 200 33.0
Lalb_Chr07g0185481 Lupinus albus HOM05D002540 ORTHO05D002672 1.6e-12 77.4 161 34.8
Phvul.002G258800 Phaseolus vulgaris HOM05D002540 ORTHO05D002672 2.2e-12 77.0 334 26.3
MBI10_g08627_MAGBIO Magnolia biondii HOM05D002540 ORTHO05D002672 4.8e-12 75.9 170 32.4
Ah.02g130270 Amaranthus hybridus HOM05D002540 ORTHO05D002672 8.2e-12 75.1 165 33.3
Gohir.D04G180300 Gossypium hirsutum HOM05D002540 ORTHO05D002672 1.1e-11 74.7 323 26.9
PSO478G4230 Papaver somniferum HOM05D002540 ORTHO05D002672 1.1e-11 74.7 173 31.2
Cc11_g16000 Coffea canephora HOM05D002540 ORTHO05D002672 1.4e-11 74.3 314 27.7
Gorai.012G173400 Gossypium raimondii HOM05D002540 ORTHO05D002672 1.8e-11 73.9 322 26.1
PSO017G6151 Papaver somniferum HOM05D002540 ORTHO05D002672 1.8e-11 73.9 173 30.6
Hma1.2p1_0815F.1_g222730 Hydrangea macrophylla HOM05D002540 ORTHO05D002672 2.4e-11 73.6 182 30.8
Lalb_Chr12g0204061 Lupinus albus HOM05D002540 ORTHO05D002672 2.4e-11 73.6 167 32.9
Haze_12273 Corylus avellana HOM05D002540 ORTHO05D002672 3.1e-11 73.2 190 32.6
Cc11_g15650 Coffea canephora HOM05D002540 ORTHO05D002672 5.3e-11 72.4 161 32.3
AL1G24700 Arabidopsis lyrata HOM05D002540 ORTHO05D002672 6.9e-11 72.0 305 29.5
CSS0045039 Camellia sinensis var. sinensis HOM05D002540 ORTHO05D002672 9.0e-11 71.6 249 27.7
Migut.K00623 Erythranthe guttata HOM05D002540 ORTHO05D002672 9.0e-11 71.6 169 30.2
MD13G1103200 Malus domestica HOM05D002540 ORTHO05D002672 1.2e-10 71.2 273 30.4
Cfa009238 Carpinus fangiana HOM05D002540 ORTHO05D002672 2.6e-10 70.1 191 31.4
SHI17830 Sapria himalayana HOM05D002540 ORTHO05D002672 4.5e-10 69.3 160 30.0
Sp2g15500 Schrenkiella parvula HOM05D002540 ORTHO05D002672 4.5e-10 69.3 165 32.7
Carub.0001s1280 Capsella rubella HOM05D002540 ORTHO05D002672 5.9e-10 68.9 308 28.6
DCAR_007041 Daucus carota HOM05D002540 ORTHO05D002672 5.9e-10 68.9 209 27.3
Aa31LG2G6160 Aethionema arabicum HOM05D002540 ORTHO05D002672 1.3e-09 67.8 165 33.3
CARHR147360 Cardamine hirsuta HOM05D002540 ORTHO05D002672 1.3e-09 67.8 160 32.5
Gohir.A04G137100 Gossypium hirsutum HOM05D002540 ORTHO05D002672 1.3e-09 67.8 166 30.1
Sopen05g008680 Solanum pennellii HOM05D002540 ORTHO05D002672 2.9e-09 66.6 166 28.3
PGSC0003DMG400011733 Solanum tuberosum HOM05D002540 ORTHO05D002672 2.9e-09 66.6 166 28.3
CAN.G436.3 Capsicum annuum HOM05D002540 ORTHO05D002672 3.8e-09 66.2 166 28.3
CARHR013380 Cardamine hirsuta HOM05D002540 ORTHO05D002672 3.8e-09 66.2 303 28.1
AL5G15120 Arabidopsis lyrata HOM05D002540 ORTHO05D002672 6.5e-09 65.5 328 30.2
Actinidia37448 Actinidia chinensis HOM05D002540 ORTHO05D002672 8.5e-09 65.1 305 27.5
AT3G26350 Arabidopsis thaliana HOM05D002540 ORTHO05D002672 8.5e-09 65.1 182 30.8
BraA08t35173Z Brassica rapa HOM05D002540 ORTHO05D002672 1.4e-08 64.3 306 25.2
A06p42070 Brassica napus HOM05D002540 ORTHO05D002672 1.9e-08 63.9 165 32.7
A08p32490 Brassica napus HOM05D002540 ORTHO05D002672 1.9e-08 63.9 306 25.2
Rhsim12G0108200 Rhododendron simsii HOM05D002540 ORTHO05D002672 3.2e-08 63.2 196 27.0
Carub.0005s0427 Capsella rubella HOM05D002540 ORTHO05D002672 4.2e-08 62.8 167 31.7
FAN22G0800 Fragaria x ananassa HOM05D002540 ORTHO05D002672 4.2e-08 62.8 332 29.8
BolC7t44065H Brassica oleracea HOM05D002540 ORTHO05D002672 9.4e-08 61.6 226 31.9
BraA06t27124Z Brassica rapa HOM05D002540 ORTHO05D002672 9.4e-08 61.6 226 31.9
Eucgr.H02472 Eucalyptus grandis HOM05D002540 ORTHO05D002672 1.2e-07 61.2 168 30.4
C07p35410 Brassica napus HOM05D002540 ORTHO05D002672 1.6e-07 60.8 226 31.4
Thhalv10008230m.g Eutrema salsugineum HOM05D002540 ORTHO05D002672 1.6e-07 60.8 303 29.0
FAN17G1633 Fragaria x ananassa HOM05D002540 ORTHO05D002672 2.7e-07 60.1 344 27.9
TAR622G1141 Trochodendron aralioides HOM05D002540 ORTHO05D002672 3.6e-07 59.7 88 39.8
HanXRQChr17g0569511 Helianthus annuus HOM05D002540 ORTHO05D002672 6.1e-07 58.9 145 31.0
Sp1g11600 Schrenkiella parvula HOM05D002540 ORTHO05D002672 6.1e-07 58.9 303 28.7
BcaB07g30232 Brassica carinata HOM05D002540 ORTHO05D002672 7.9e-07 58.5 140 32.9
TAR624G0818 Trochodendron aralioides HOM05D002540 ORTHO05D002672 1.0e-06 58.2 185 25.9
C08p15790 Brassica napus HOM05D002540 ORTHO05D002672 1.4e-06 57.8 291 24.1
AUR62017161 Chenopodium quinoa HOM05D002540 ORTHO05D002672 1.4e-06 57.8 179 26.3
ATR0751G089 Amborella trichopoda HOM05D002540 ORTHO05D002672 1.8e-06 57.4 158 25.9
Oeu040392.1 Olea europaea HOM05D002540 ORTHO05D002672 1.8e-06 57.4 193 25.4
QL08p002517 Quercus lobata HOM05D002540 ORTHO05D002672 1.8e-06 57.4 159 25.8
A06p08670 Brassica napus HOM05D002540 ORTHO05D002672 2.3e-06 57.0 302 26.8
BraA06t24063Z Brassica rapa HOM05D002540 ORTHO05D002672 2.3e-06 57.0 302 26.8
MSTRG.7020 Avicennia marina HOM05D002540 ORTHO05D002672 5.1e-06 55.8 158 25.9
A02p34520 Brassica napus HOM05D002540 ORTHO05D002672 5.1e-06 55.8 139 31.7
BraA02t08462Z Brassica rapa HOM05D002540 ORTHO05D002672 5.1e-06 55.8 139 31.7
Lj6C814G17 Lonicera japonica HOM05D000273 ORTHO05D000198 5.1e-06 55.8 304 29.3
BolC8t49205H Brassica oleracea HOM05D002540 ORTHO05D002672 8.8e-06 55.1 292 24.0
Potri.011G165500 Populus trichocarpa HOM05D002540 ORTHO05D002672 8.8e-06 55.1 108 29.6


User provided reference genes

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