Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 7.9e-112 407.1 208 100.0
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 6.3e-109 397.5 208 96.6
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 8.2e-109 397.1 208 96.6
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 8.2e-109 397.1 208 97.1
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 1.4e-108 396.4 208 97.1
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 1.8e-108 396.0 208 96.2
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 2.4e-108 395.6 208 96.6
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 3.1e-108 395.2 208 96.2
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 3.1e-108 395.2 208 96.6
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 3.1e-108 395.2 208 96.6
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 3.1e-108 395.2 208 96.2
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 4.1e-108 394.8 208 95.7
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 6.9e-108 394.0 208 95.7
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 9.0e-108 393.7 208 95.2
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 1.2e-107 393.3 208 95.2
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.5e-107 392.9 208 94.7
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 2.6e-107 392.1 208 95.2
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 2.6e-107 392.1 208 94.7
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 4.5e-107 391.3 208 94.7
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 1.3e-106 389.8 207 93.7
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.7e-106 389.4 208 94.7
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.7e-106 389.4 208 94.7
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 2.2e-106 389.0 206 94.7
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 2.2e-106 389.0 206 94.7
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 2.9e-106 388.7 208 93.8
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 3.8e-106 388.3 208 93.8
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 5.0e-106 387.9 208 94.2
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 5.0e-106 387.9 208 93.3
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 8.5e-106 387.1 208 94.2
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 1.4e-105 386.3 206 94.2
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 1.4e-105 386.3 207 94.2
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 2.5e-105 385.6 208 93.3
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 4.2e-105 384.8 208 92.8
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 4.2e-105 384.8 208 93.8
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 7.2e-105 384.0 206 94.2
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 7.2e-105 384.0 208 92.3
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 7.2e-105 384.0 208 93.3
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 7.2e-105 384.0 206 93.7
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 7.2e-105 384.0 208 91.8
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 9.4e-105 383.6 208 92.3
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 1.2e-104 383.3 208 91.8
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 3.6e-104 381.7 208 91.3
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 3.6e-104 381.7 213 91.5
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 4.6e-104 381.3 208 90.9
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 6.1e-104 380.9 208 91.3
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 6.1e-104 380.9 208 92.3
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 7.9e-104 380.6 208 91.8
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 1.0e-103 380.2 206 92.2
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 1.0e-103 380.2 207 91.3
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 1.4e-103 379.8 208 91.8
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 1.4e-103 379.8 207 92.8
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 1.4e-103 379.8 208 91.8
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 1.8e-103 379.4 206 93.2
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 2.3e-103 379.0 208 90.9
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 2.3e-103 379.0 210 91.9
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 3.0e-103 378.6 207 90.8
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 5.1e-103 377.9 208 91.3
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 1.1e-102 376.7 206 90.3
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 1.1e-102 376.7 208 89.9
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 1.5e-102 376.3 207 90.8
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 1.9e-102 375.9 208 90.9
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 4.3e-102 374.8 203 92.6
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 5.7e-102 374.4 206 91.7
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 9.7e-102 373.6 206 89.3
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 1.7e-101 372.9 208 90.4
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 1.7e-101 372.9 209 90.9
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 2.2e-101 372.5 208 88.5
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 2.2e-101 372.5 207 89.4
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 2.2e-101 372.5 208 92.8
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 8.2e-101 370.5 208 89.9
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 8.2e-101 370.5 209 90.4
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 1.1e-100 370.2 206 89.3
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 1.1e-100 370.2 206 90.3
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 1.1e-100 370.2 209 90.0
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 1.1e-100 370.2 209 90.0
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 1.1e-100 370.2 218 86.7
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 1.8e-100 369.4 208 88.5
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 3.1e-100 368.6 208 89.4
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 3.1e-100 368.6 208 89.4
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 5.3e-100 367.9 205 89.8
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 6.9e-100 367.5 208 88.5
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 6.9e-100 367.5 207 88.4
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 9.1e-100 367.1 208 88.9
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 1.2e-99 366.7 208 88.9
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 1.5e-99 366.3 208 88.9
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 1.5e-99 366.3 208 88.9
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 1.5e-99 366.3 208 87.5
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 1.5e-99 366.3 208 88.9
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 2.0e-99 365.9 208 88.5
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 2.6e-99 365.5 196 93.9
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 2.6e-99 365.5 205 89.3
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 1.0e-98 363.6 207 90.8
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 1.7e-98 362.8 208 87.5
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 9.4e-97 357.1 208 88.0
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.2e-96 356.7 208 84.1
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.2e-96 356.7 208 83.7
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 1.4e-95 353.2 208 83.7
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.8e-95 352.8 207 86.5
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.8e-95 352.8 207 86.5
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 6.7e-95 350.9 207 86.0
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 2.0e-94 349.4 208 85.6
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 6.3e-93 344.4 207 84.1
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 6.3e-93 344.4 208 86.1
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 1.1e-92 343.6 178 95.5
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 2.4e-92 342.4 178 94.9
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 7.7e-91 337.4 178 94.4
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 1.0e-90 337.0 179 93.3
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.4e-89 333.2 206 84.5
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 3.0e-87 325.5 177 89.8
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 2.0e-86 322.8 179 87.7
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 3.3e-86 322.0 210 82.9
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 9.7e-86 320.5 208 74.0
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 1.3e-85 320.1 208 81.7
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 2.4e-84 315.8 190 83.7
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 4.0e-79 298.5 167 88.0
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 2.8e-77 292.4 205 74.6
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 3.7e-77 292.0 156 92.3
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 1.8e-76 289.7 156 92.9
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 2.4e-76 289.3 207 74.9
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 4.4e-70 268.5 211 70.6
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 1.0e-66 257.3 206 68.0
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 1.3e-66 256.9 202 61.4
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 1.5e-65 253.4 203 60.1
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 7.2e-65 251.1 200 59.5
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 8.0e-64 247.7 168 79.2
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 1.8e-63 246.5 197 60.9
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 1.7e-58 229.9 205 53.2
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 3.8e-58 228.8 120 93.3
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 5.6e-57 224.9 133 88.0
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 7.5e-54 214.5 207 52.7
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 8.3e-53 211.1 151 74.2
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 2.0e-51 206.5 148 72.3
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 4.6e-51 205.3 207 52.7
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 3.3e-49 199.1 198 48.5
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 5.6e-49 198.4 209 56.0
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 2.6e-46 189.5 196 45.9
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 6.0e-43 178.3 231 43.3
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 1.3e-42 177.2 160 64.4
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 3.3e-41 172.6 208 50.5
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 3.6e-40 169.1 98 84.7
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 3.0e-34 149.4 206 47.6
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 3.6e-32 142.5 96 79.2
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 1.8e-31 140.2 187 38.5
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 3.1e-31 139.4 99 73.7
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 4.9e-29 132.1 74 87.8
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 3.2e-28 129.4 92 72.8
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.2e-27 127.5 83 75.9
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 1.6e-27 127.1 135 56.3
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 1.5e-25 120.6 60 91.7
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 4.0e-23 112.5 82 69.5
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 2.0e-22 110.2 73 79.5
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 1.4e-20 104.0 60 85.0
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 3.8e-13 79.3 61 63.9
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 7.9e-11 71.6 62 67.7
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 2.1e-08 63.5 39 74.4
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 8.1e-08 61.6 38 73.7
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 1.8e-07 60.5 58 65.5
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 9.0e-07 58.2 137 25.5


User provided reference genes

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