Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 0.0e+00 1218.8 740 100.0
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 7.8e-279 963.8 767 74.3
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 2.0e-250 869.4 777 68.0
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 9.3e-224 780.8 745 64.4
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 7.5e-165 585.1 793 52.6
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 3.2e-163 579.7 799 50.3
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 7.5e-157 558.5 807 49.9
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 4.0e-150 536.2 818 48.4
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 3.4e-149 533.1 813 47.1
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 1.7e-148 530.8 801 51.1
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 4.2e-147 526.2 816 49.1
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 1.7e-145 520.8 810 47.4
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 5.8e-141 505.8 760 47.1
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 1.7e-140 504.2 822 47.0
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 2.3e-137 493.8 821 47.6
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.6e-137 492.3 760 46.6
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.9e-136 490.7 822 45.4
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.8e-135 486.1 771 48.1
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 1.8e-134 484.2 801 53.7
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 1.8e-134 484.2 768 51.4
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 6.9e-134 482.3 820 44.5
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.5e-133 481.1 758 50.8
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 4.5e-133 479.6 820 49.1
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 3.8e-132 476.5 811 44.5
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 1.1e-131 474.9 758 49.7
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.1e-131 474.9 773 45.7
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.4e-131 474.6 757 51.7
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 1.2e-130 471.5 811 48.8
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.5e-130 469.9 753 47.8
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 3.0e-129 466.8 775 51.9
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.1e-129 466.1 755 49.5
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 5.6e-128 462.6 793 43.8
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 5.6e-128 462.6 802 43.3
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 7.4e-128 462.2 805 44.3
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 2.8e-127 460.3 793 46.5
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 6.2e-127 459.1 844 48.6
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 1.4e-126 458.0 789 44.2
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 3.1e-126 456.8 879 41.3
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 1.3e-124 451.4 815 46.0
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 3.8e-124 449.9 822 50.1
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 8.4e-124 448.7 826 45.0
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.3e-121 441.4 820 45.9
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 3.9e-121 439.9 814 42.5
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 1.3e-119 434.9 799 42.6
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 6.2e-119 432.6 759 49.0
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 1.4e-118 431.4 790 41.8
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 9.0e-118 428.7 657 50.7
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 1.5e-117 427.9 800 45.9
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 3.4e-117 426.8 833 43.3
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 3.2e-115 420.2 783 47.3
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 9.3e-115 418.7 789 45.0
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 2.1e-114 417.5 829 43.5
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 1.3e-113 414.8 834 44.6
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 1.3e-113 414.8 794 42.8
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.8e-113 414.5 793 43.5
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 3.0e-113 413.7 750 41.9
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 3.0e-113 413.7 841 45.4
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 7.4e-112 409.1 814 47.1
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 5.3e-110 402.9 996 37.2
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 4.5e-109 399.8 792 40.3
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.3e-108 398.3 765 46.0
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 2.9e-108 397.1 469 55.4
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 4.2e-107 393.3 802 45.8
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 1.8e-105 387.9 812 47.7
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 1.8e-105 387.9 794 43.5
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 3.9e-105 386.7 772 41.8
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 4.5e-101 373.2 799 39.9
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 1.3e-100 371.7 830 43.4
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.1e-99 368.6 797 40.3
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 2.5e-99 367.5 501 54.9
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 2.5e-99 367.5 803 44.7
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 4.2e-99 366.7 815 40.5
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.6e-98 364.8 773 39.1
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 2.7e-98 364.0 433 58.7
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 1.8e-97 361.3 797 43.7
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 2.3e-97 360.9 802 39.5
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 1.1e-96 358.6 799 39.5
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 2.2e-95 354.4 804 40.7
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 9.1e-94 349.0 839 42.4
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 2.6e-93 347.4 811 44.3
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 3.5e-93 347.1 766 42.4
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 1.3e-92 345.1 829 38.4
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 4.2e-91 340.1 794 43.7
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 5.5e-91 339.7 808 38.5
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 2.3e-89 334.3 774 39.9
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 5.2e-89 333.2 783 38.4
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 1.1e-88 332.0 756 41.4
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 2.0e-88 331.3 771 44.0
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 9.7e-88 328.9 789 40.7
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 2.4e-86 324.3 805 37.5
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 2.4e-86 324.3 825 37.2
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 2.6e-85 320.9 754 38.5
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 1.5e-83 315.1 555 45.0
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 1.5e-83 315.1 758 38.7
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 1.9e-83 314.7 770 38.7
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 1.9e-83 314.7 814 45.5
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 7.2e-83 312.8 816 38.1
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 4.7e-82 310.1 772 40.7
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 6.1e-82 309.7 748 41.6
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 3.0e-81 307.4 752 42.2
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 1.5e-80 305.1 786 38.5
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 2.6e-80 304.3 772 42.0
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 1.3e-79 302.0 781 39.4
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 8.3e-79 299.3 749 39.5
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 3.1e-78 297.4 750 40.5
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 4.1e-78 297.0 821 35.6
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 9.1e-78 295.8 408 49.3
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 1.2e-77 295.4 786 39.9
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 1.6e-77 295.0 792 40.8
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 2.5e-75 287.7 749 39.1
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 5.5e-75 286.6 542 50.6
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 5.5e-75 286.6 799 39.9
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 1.6e-74 285.0 808 38.7
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 2.1e-74 284.6 724 38.4
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 6.8e-73 279.6 712 42.7
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 2.0e-72 278.1 741 36.7
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 1.3e-71 275.4 746 38.6
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 6.3e-71 273.1 524 49.6
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 8.3e-71 272.7 701 41.9
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 8.3e-71 272.7 790 37.3
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 1.6e-69 268.5 653 37.4
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 1.0e-68 265.8 563 46.2
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 1.6e-66 258.5 769 37.6
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 2.8e-66 257.7 751 36.8
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 4.0e-65 253.8 745 37.4
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 8.9e-65 252.7 571 42.6
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 5.7e-64 250.0 642 41.6
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 1.7e-63 248.4 778 36.9
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 2.4e-62 244.6 780 36.2
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 1.5e-59 235.3 592 38.9
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 2.5e-59 234.6 270 54.8
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 1.9e-54 218.4 511 40.7
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 4.1e-54 217.2 503 41.0
Glyma.10G128300 Glycine max HOM05D003628 ORTHO05D004253 1.0e-44 186.0 457 35.7
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 5.1e-44 183.7 179 60.3
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 5.2e-41 173.7 545 35.4
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 4.6e-37 160.6 387 53.0
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 6.0e-37 160.2 113 77.0
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 7.6e-32 143.3 419 30.8
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 9.9e-32 142.9 582 31.6
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 8.4e-31 139.8 424 32.1
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 1.9e-30 138.7 400 32.8
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 3.2e-30 137.9 602 33.9
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 6.0e-29 133.7 357 45.4
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 1.0e-28 132.9 129 63.6
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 2.3e-28 131.7 92 76.1
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 3.9e-28 131.0 543 36.5
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 5.6e-27 127.1 184 53.3
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 7.3e-27 126.7 331 44.7
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 6.2e-26 123.6 661 32.5
Actinidia11386 Actinidia chinensis HOM05D003628 ORTHO05D004253 1.1e-22 112.8 415 32.8
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.9e-19 102.1 400 29.0
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 3.3e-19 101.3 181 41.4
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 5.6e-19 100.5 99 58.6
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 4.0e-17 94.4 85 63.5
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 2.6e-16 91.7 55 80.0
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.9e-16 89.7 52 90.4
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.4e-14 85.9 54 83.3
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 5.4e-14 84.0 62 71.0
Gorai.004G113400 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.3e-12 78.6 58 74.1
Gohir.D04G051401 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.9e-12 77.8 58 75.9
SHI00869 Sapria himalayana HOM05D003628 ORTHO05D004253 3.9e-12 77.8 76 59.2
Gohir.A02G090400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.7e-12 77.0 66 66.7
Gohir.D12G066350 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.3e-10 72.8 58 70.7
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 1.2e-08 66.2 48 70.8
CDE04G1765 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 4.9e-07 60.8 249 28.5


User provided reference genes

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