Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G173000 Populus trichocarpa HOM05D006603 ORTHO05D007786 2.5e-75 285.8 151 100.0
Manes.03G157300 Manihot esculenta HOM05D006603 ORTHO05D007786 3.7e-55 218.8 148 75.0
Potri.010G064500 Populus trichocarpa HOM05D006603 ORTHO05D007786 4.9e-55 218.4 151 76.8
Manes.15G046500 Manihot esculenta HOM05D006603 ORTHO05D007786 3.1e-49 199.1 140 72.9
TWI73G0993 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 3.4e-48 195.7 151 68.9
Ciclev10006126m.g Citrus clementina HOM05D006603 ORTHO05D007786 5.8e-48 194.9 153 68.0
TWI09G1292 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 4.9e-47 191.8 151 68.9
EL10Ac3g06681 Beta vulgaris HOM05D006603 ORTHO05D007786 1.1e-46 190.7 148 66.9
Thecc.04G267600 Theobroma cacao HOM05D006603 ORTHO05D007786 5.4e-46 188.3 151 68.9
Psat6g018400 Pisum sativum HOM05D006603 ORTHO05D007786 7.1e-46 188.0 151 67.5
CiPaw.01G176600 Carya illinoinensis HOM05D006603 ORTHO05D007786 9.2e-46 187.6 151 64.9
Ca_25848_v3 Cicer arietinum L. HOM05D006603 ORTHO05D007786 4.6e-45 185.3 148 68.9
Medtr1g045660 Medicago truncatula HOM05D006603 ORTHO05D007786 6.0e-45 184.9 150 68.0
Lj6g0018890 Lotus japonicus HOM05D006603 ORTHO05D007786 3.9e-44 182.2 151 64.9
Glyma.20G082000 Glycine max HOM05D006603 ORTHO05D007786 5.1e-44 181.8 151 66.2
Gohir.D09G231900 Gossypium hirsutum HOM05D006603 ORTHO05D007786 5.1e-44 181.8 144 67.4
Gohir.A09G230800 Gossypium hirsutum HOM05D006603 ORTHO05D007786 3.3e-43 179.1 144 66.7
Lalb_Chr03g0036931 Lupinus albus HOM05D006603 ORTHO05D007786 1.2e-42 177.2 151 64.9
TPR.G23967 Trifolium pratense HOM05D006603 ORTHO05D007786 1.6e-42 176.8 144 66.7
arahy.Tifrunner.gnm1.ann1.GIKJ41 Arachis hypogaea HOM05D006603 ORTHO05D007786 1.8e-41 173.3 176 56.8
Duzib151G0118 Durio zibethinus HOM05D006603 ORTHO05D007786 1.8e-41 173.3 141 66.7
arahy.Tifrunner.gnm1.ann1.T2GGRX Arachis hypogaea HOM05D006603 ORTHO05D007786 3.1e-41 172.6 176 57.4
CANSAT78G1588 Cannabis sativa HOM05D006603 ORTHO05D007786 3.1e-41 172.6 145 62.1
MD13G1223900 Malus domestica HOM05D006603 ORTHO05D007786 3.1e-41 172.6 151 62.3
Dinv29792 Davidia involucrata HOM05D006603 ORTHO05D007786 8.9e-41 171.0 152 63.2
Phvul.007G231900 Phaseolus vulgaris HOM05D006603 ORTHO05D007786 1.5e-40 170.2 144 65.3
TAR633G2131 Trochodendron aralioides HOM05D006603 ORTHO05D007786 2.0e-40 169.9 151 62.9
MD16G1228700 Malus domestica HOM05D006603 ORTHO05D007786 4.4e-40 168.7 151 61.6
Aqoxy2G03755 Aquilegia oxysepala HOM05D006603 ORTHO05D007786 5.8e-40 168.3 151 62.3
Duzib212G0187 Durio zibethinus HOM05D006603 ORTHO05D007786 9.9e-40 167.5 151 62.9
CsaV3_2G012360 Cucumis sativus L. HOM05D006603 ORTHO05D007786 1.3e-39 167.2 148 60.1
FAN12G4195 Fragaria x ananassa HOM05D006603 ORTHO05D007786 1.7e-39 166.8 151 60.9
THA.LOC104816009 Tarenaya hassleriana HOM05D006603 ORTHO05D007786 3.8e-39 165.6 138 65.2
CSS0001604 Camellia sinensis var. sinensis HOM05D006603 ORTHO05D007786 4.9e-39 165.2 148 60.1
MELO3C023048.2 Cucumis melo HOM05D006603 ORTHO05D007786 6.4e-39 164.9 148 58.8
FvH4_4g05040 Fragaria vesca HOM05D006603 ORTHO05D007786 1.1e-38 164.1 151 60.3
RcHm_v2.0_Chr4g0395941 Rosa chinensis HOM05D006603 ORTHO05D007786 1.4e-38 163.7 151 59.6
Sabra08G0132100 Salix brachista HOM05D006603 ORTHO05D007786 1.4e-38 163.7 98 88.8
GSVIVG01027941001 Vitis vinifera HOM05D006603 ORTHO05D007786 2.4e-38 162.9 144 64.6
MBI10_g39247_MAGBIO Magnolia biondii HOM05D006603 ORTHO05D007786 3.2e-38 162.5 145 60.0
Carub.0001s0377 Capsella rubella HOM05D006603 ORTHO05D007786 5.4e-38 161.8 140 60.0
AL1G14230 Arabidopsis lyrata HOM05D006603 ORTHO05D007786 7.1e-38 161.4 140 60.7
FAN22G1779 Fragaria x ananassa HOM05D006603 ORTHO05D007786 1.6e-37 160.2 151 58.9
Eucgr.H02902 Eucalyptus grandis HOM05D006603 ORTHO05D007786 2.7e-37 159.5 152 59.2
Sc25g0004840 Simmondsia chinensis HOM05D006603 ORTHO05D007786 2.7e-37 159.5 144 60.4
Actinidia39936 Actinidia chinensis HOM05D006603 ORTHO05D007786 6.0e-37 158.3 151 56.3
AT1G04555 Arabidopsis thaliana HOM05D006603 ORTHO05D007786 1.0e-36 157.5 140 59.3
Actinidia11378 Actinidia chinensis HOM05D006603 ORTHO05D007786 1.3e-36 157.1 151 57.0
BolC5t29054H Brassica oleracea HOM05D006603 ORTHO05D007786 5.1e-36 155.2 140 60.7
Hund22279 Selenicereus undatus HOM05D006603 ORTHO05D007786 6.6e-36 154.8 143 58.7
Thhalv10009014m.g Eutrema salsugineum HOM05D006603 ORTHO05D007786 8.6e-36 154.5 149 57.0
Hma1.2p1_0112F.1_g054890 Hydrangea macrophylla HOM05D006603 ORTHO05D007786 3.3e-35 152.5 141 56.7
Sp1g03390 Schrenkiella parvula HOM05D006603 ORTHO05D007786 4.3e-35 152.1 149 56.4
BraA10t42567Z Brassica rapa HOM05D006603 ORTHO05D007786 2.1e-34 149.8 141 59.6
Cc03_g06500 Coffea canephora HOM05D006603 ORTHO05D007786 4.7e-34 148.7 144 60.4
Nitab4.5_0005154g0030 Nicotiana tabacum HOM05D006603 ORTHO05D007786 4.7e-34 148.7 141 60.3
PSO210G0805 Papaver somniferum HOM05D006603 ORTHO05D007786 1.1e-33 147.5 143 57.3
Lsat_1_v5_gn_1_75441 Lactuca sativa HOM05D006603 ORTHO05D007786 1.4e-33 147.1 140 58.6
COL.COLO4_15990 Corchorus olitorius HOM05D006603 ORTHO05D007786 3.1e-33 146.0 122 63.1
PGR004G2303 Punica granatum HOM05D006603 ORTHO05D007786 6.9e-33 144.8 137 59.1
Aa31LG1G20320 Aethionema arabicum HOM05D006603 ORTHO05D007786 9.0e-33 144.4 142 57.0
Haze_11482 Corylus avellana HOM05D006603 ORTHO05D007786 1.5e-32 143.7 116 67.2
Gorai.006G254700 Gossypium raimondii HOM05D006603 ORTHO05D007786 2.0e-32 143.3 122 63.1
Peaxi162Scf00531g00210 Petunia axillaris HOM05D006603 ORTHO05D007786 2.0e-32 143.3 143 58.7
vmacro15486 Vaccinium macrocarpon HOM05D006603 ORTHO05D007786 5.8e-32 141.7 175 51.4
PSO210G7184 Papaver somniferum HOM05D006603 ORTHO05D007786 9.9e-32 141.0 145 56.6
ECA248G1661 Erigeron canadensis HOM05D006603 ORTHO05D007786 1.3e-31 140.6 141 58.2
BcaNung06560 Brassica carinata HOM05D006603 ORTHO05D007786 1.7e-31 140.2 139 57.6
QL06p021600 Quercus lobata HOM05D006603 ORTHO05D007786 4.9e-31 138.7 98 71.4
CAN.G812.23 Capsicum annuum HOM05D006603 ORTHO05D007786 8.4e-31 137.9 141 58.9
CARHR003900 Cardamine hirsuta HOM05D006603 ORTHO05D007786 1.9e-30 136.7 131 58.0
AUR62018035 Chenopodium quinoa HOM05D006603 ORTHO05D007786 3.2e-30 136.0 120 60.0
Os02g0816700 Oryza sativa ssp. japonica HOM05D006603 ORTHO05D007786 5.4e-30 135.2 155 51.0
HanXRQChr01g0023081 Helianthus annuus HOM05D006603 ORTHO05D007786 1.2e-29 134.0 140 52.1
Sopen09g033770 Solanum pennellii HOM05D006603 ORTHO05D007786 1.2e-29 134.0 144 53.5
AUR62015239 Chenopodium quinoa HOM05D006603 ORTHO05D007786 1.6e-29 133.7 119 58.8
ATR0787G168 Amborella trichopoda HOM05D006603 ORTHO05D007786 2.1e-29 133.3 139 52.5
MSTRG.9849 Avicennia marina HOM05D006603 ORTHO05D007786 2.7e-29 132.9 154 51.9
Cfa014798 Carpinus fangiana HOM05D006603 ORTHO05D007786 3.5e-29 132.5 96 72.9
VMungo0720G0308 Vigna mungo HOM05D006603 ORTHO05D007786 6.0e-29 131.7 124 57.3
CDE04G0122 Ceratophyllum demersum HOM05D006603 ORTHO05D007786 1.3e-28 130.6 145 52.4
PGSC0003DMG400001502 Solanum tuberosum HOM05D006603 ORTHO05D007786 1.7e-28 130.2 144 52.8
Sed0025873 Sechium edule HOM05D006603 ORTHO05D007786 2.3e-28 129.8 124 54.8
Ah.04g153810 Amaranthus hybridus HOM05D006603 ORTHO05D007786 3.9e-28 129.0 122 59.0
Oeu059390.1 Olea europaea HOM05D006603 ORTHO05D007786 5.1e-28 128.6 144 51.4
SGA_v2.0_scaffold147G36268 Striga asiatica HOM05D006603 ORTHO05D007786 8.7e-28 127.9 148 54.7
Prupe.1G050700 Prunus persica HOM05D006603 ORTHO05D007786 1.1e-27 127.5 96 69.8
ClCG06G007300 Citrullus lanatus HOM05D006603 ORTHO05D007786 1.5e-27 127.1 154 51.3
BolC8t46928H Brassica oleracea HOM05D006603 ORTHO05D007786 2.8e-26 122.9 139 54.7
BcaC07g36903 Brassica carinata HOM05D006603 ORTHO05D007786 6.2e-26 121.7 137 55.5
BolC8t46922H Brassica oleracea HOM05D006603 ORTHO05D007786 8.1e-26 121.3 139 54.0
Migut.G00559 Erythranthe guttata HOM05D006603 ORTHO05D007786 8.1e-26 121.3 154 48.7
BolC8t46924H Brassica oleracea HOM05D006603 ORTHO05D007786 1.1e-25 120.9 139 54.0
BolC8t46925H Brassica oleracea HOM05D006603 ORTHO05D007786 1.1e-25 120.9 139 54.0
FAN17G1046 Fragaria x ananassa HOM05D006603 ORTHO05D007786 1.4e-25 120.6 96 65.6
C05p02730 Brassica napus HOM05D001210 ORTHO05D001036 2.4e-25 119.8 116 57.8
A08p36880 Brassica napus HOM05D006603 ORTHO05D007786 4.5e-24 115.5 139 51.8
Rhsim02G0047700 Rhododendron simsii HOM05D006603 ORTHO05D007786 5.8e-24 115.2 123 50.4
Zm00001eb191430 Zea mays HOM05D006603 ORTHO05D007786 7.6e-24 114.8 93 66.7
Cfa014800 Carpinus fangiana HOM05D006603 ORTHO05D007786 2.2e-23 113.2 76 75.0
BolC8t52747H Brassica oleracea HOM05D000117 ORTHO05D007786 1.1e-22 110.9 133 52.6
BcaB03g13488 Brassica carinata HOM05D006603 ORTHO05D007786 3.2e-22 109.4 124 52.4
Nitab4.5_0001041g0010 Nicotiana tabacum HOM05D006603 ORTHO05D007786 5.4e-22 108.6 122 55.7
Sabra10G0042500 Salix brachista HOM05D006603 ORTHO05D007786 3.5e-21 105.9 89 65.2
Dinv27124 Davidia involucrata HOM05D006603 ORTHO05D007786 6.0e-21 105.1 83 65.1
DCAR_027355 Daucus carota HOM05D004511 ORTHO05D005348 1.8e-20 103.6 89 58.4
arahy.Tifrunner.gnm1.ann1.YUK4FD Arachis hypogaea HOM05D006603 ORTHO05D007786 8.7e-20 101.3 141 46.1
Solyc09g090820.4 Solanum lycopersicum HOM05D006603 ORTHO05D007786 3.3e-19 99.4 87 59.8
arahy.Tifrunner.gnm1.ann1.QP5CHE Arachis hypogaea HOM05D006603 ORTHO05D007786 9.6e-19 97.8 127 51.2
HPP92_020757 Vanilla planifolia HOM05D006603 ORTHO05D007786 1.3e-18 97.4 159 39.6
C08p01190 Brassica napus HOM05D003335 ORTHO05D003853 2.1e-18 96.7 91 63.7
BraA08t35589Z Brassica rapa HOM05D003335 ORTHO05D003853 3.1e-17 92.8 91 61.5
arahy.Tifrunner.gnm1.ann1.M12JR8 Arachis hypogaea HOM05D006603 ORTHO05D007786 5.3e-17 92.0 141 44.7
Sabra16G0316500 Salix brachista HOM05D006603 ORTHO05D007786 9.0e-17 91.3 86 62.8
SalBow2G0496 Salvia bowleyana HOM05D006603 ORTHO05D007786 1.2e-16 90.9 128 48.4
BraA09t42112Z Brassica rapa HOM05D000117 ORTHO05D007786 1.5e-16 90.5 90 61.1
unitig_32.g11693 Utricularia gibba HOM05D006603 ORTHO05D007786 5.8e-16 88.6 161 37.9
Cpa.g.sc59.20 Carica papaya HOM05D006603 ORTHO05D007786 2.2e-15 86.7 68 61.8
arahy.Tifrunner.gnm1.ann1.49WF5R Arachis hypogaea HOM05D006603 ORTHO05D007786 9.3e-14 81.3 105 48.6
arahy.Tifrunner.gnm1.ann1.N50CGY Arachis hypogaea HOM05D006603 ORTHO05D007786 2.1e-13 80.1 89 52.8
GSVIVG01027940001 Vitis vinifera HOM05D006603 ORTHO05D015671 5.1e-12 75.5 77 55.8
SMO271G0137 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 2.1e-10 70.1 133 33.8
Nn1g02998 Nelumbo nucifera HOM05D006603 ORTHO05D007786 3.7e-10 69.3 80 50.0
SMO144G0051 Selaginella moellendorffii HOM05D002103 ORTHO05D007786 3.7e-10 69.3 138 32.6
SMO308G0045 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 3.7e-10 69.3 132 33.3
Mapoly0020s0146 Marchantia polymorpha HOM05D002103 ORTHO05D007786 4.0e-09 65.9 144 34.0
C08p52130 Brassica napus HOM05D000117 ORTHO05D001036 5.3e-09 65.5 61 57.4
AagrBONN_evm.TU.Sc2ySwM_228.3673 Anthoceros agrestis HOM05D002103 ORTHO05D004020 2.0e-08 63.5 154 33.8
A09p67800 Brassica napus HOM05D000117 ORTHO05D001036 5.8e-08 62.0 60 60.0
BolC8t46926H Brassica oleracea HOM05D006603 ORTHO05D007786 5.8e-08 62.0 105 42.9
Atru.chr13.650 Acer truncatum HOM05D002103 ORTHO05D004020 2.2e-07 60.1 146 30.1
Gohir.A06G017200 Gossypium hirsutum HOM05D002103 ORTHO05D004020 4.9e-07 58.9 144 28.5
Gohir.D06G015300 Gossypium hirsutum HOM05D002103 ORTHO05D004020 4.9e-07 58.9 144 27.8
Pp3c19_17840 Physcomitrium patens HOM05D002103 ORTHO05D004020 6.5e-07 58.5 148 29.1
Manes.18G032500 Manihot esculenta HOM05D002103 ORTHO05D004020 8.4e-07 58.2 144 26.4
Cfa018527 Carpinus fangiana HOM05D002103 ORTHO05D004020 1.9e-06 57.0 130 29.2
A10p02970 Brassica napus HOM05D000117 ORTHO05D001036 2.5e-06 56.6 46 63.0
Duzib093G0320 Durio zibethinus HOM05D002103 ORTHO05D004020 3.2e-06 56.2 140 27.9
Gorai.010G018100 Gossypium raimondii HOM05D002103 ORTHO05D004020 4.2e-06 55.8 166 25.9
CiPaw.16G045800 Carya illinoinensis HOM05D002103 ORTHO05D004020 7.1e-06 55.1 142 28.2
QL06p021608 Quercus lobata HOM05D006603 ORTHO05D007786 7.1e-06 55.1 53 52.8
AagrBONN_evm.TU.Sc2ySwM_362.2116 Anthoceros agrestis HOM05D006603 ORTHO05D007786 9.3e-06 54.7 145 31.7
COL.COLO4_26478 Corchorus olitorius HOM05D002103 ORTHO05D004020 9.3e-06 54.7 144 27.1


User provided reference genes

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