Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 4.7e-305 1050.4 555 100.0
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 3.7e-273 944.5 555 85.4
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 2.3e-267 925.2 596 83.1
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 8.7e-267 923.3 555 82.9
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 8.2e-265 916.8 555 82.7
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 4.1e-264 914.4 555 82.2
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 9.1e-264 913.3 574 80.3
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 3.4e-263 911.4 555 82.3
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 1.7e-262 909.1 555 81.4
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 8.5e-262 906.7 571 80.2
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 1.6e-260 902.5 600 76.7
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 8.8e-259 896.7 555 79.8
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 7.4e-258 893.6 555 79.5
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 9.7e-258 893.3 584 77.4
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 9.7e-258 893.3 555 80.5
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 6.5e-254 880.6 560 78.8
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 1.6e-252 875.9 567 77.8
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 2.7e-252 875.2 555 79.3
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 6.1e-252 874.0 570 78.2
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 6.1e-252 874.0 561 77.5
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 1.8e-251 872.5 557 77.2
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 2.3e-251 872.1 555 77.1
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 6.7e-251 870.5 556 77.9
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 8.8e-251 870.2 555 78.0
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 7.4e-250 867.1 556 77.2
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 7.4e-250 867.1 555 78.6
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 1.7e-249 865.9 555 77.5
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 2.8e-249 865.1 561 76.8
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 1.4e-248 862.8 581 74.4
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 2.4e-248 862.1 556 78.1
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 7.0e-248 860.5 556 76.3
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 9.1e-248 860.1 555 77.7
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 1.2e-247 859.8 555 76.9
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 2.2e-246 855.5 581 74.9
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 1.5e-245 852.8 531 78.9
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 5.5e-245 850.9 555 75.3
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 7.2e-245 850.5 555 76.4
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 1.6e-244 849.4 554 76.7
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 2.1e-244 849.0 555 75.5
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 2.1e-244 849.0 555 76.2
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 1.0e-243 846.7 555 75.1
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 1.4e-243 846.3 557 75.9
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 8.8e-243 843.6 579 73.9
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 1.2e-242 843.2 566 76.7
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 2.0e-242 842.4 552 76.3
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 5.7e-242 840.9 555 76.9
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 3.7e-241 838.2 564 74.6
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 3.7e-241 838.2 552 76.4
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 3.7e-241 838.2 558 74.0
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 4.8e-241 837.8 557 76.3
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 2.0e-239 832.4 559 75.0
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 2.0e-239 832.4 603 71.0
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 7.7e-239 830.5 555 75.1
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 7.7e-239 830.5 552 73.9
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 2.9e-238 828.6 582 73.5
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 3.8e-238 828.2 556 74.3
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 9.4e-237 823.5 593 71.2
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 2.1e-236 822.4 556 74.3
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 6.1e-236 820.8 556 73.9
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 6.8e-235 817.4 556 73.9
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 1.5e-234 816.2 534 82.4
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 2.6e-234 815.5 555 75.0
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 3.4e-234 815.1 556 73.2
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 9.8e-234 813.5 671 65.4
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 1.3e-233 813.1 491 80.7
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.4e-232 809.7 613 68.8
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 9.1e-232 807.0 541 73.8
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 1.4e-227 793.1 555 71.7
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 1.8e-227 792.7 555 71.4
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 1.2e-226 790.0 556 71.0
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 3.7e-225 785.0 558 71.9
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 4.9e-225 784.6 555 74.2
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 8.3e-225 783.9 508 75.8
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 5.4e-224 781.2 559 70.3
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 9.2e-224 780.4 462 82.7
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 9.2e-224 780.4 526 75.5
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 2.7e-223 778.9 565 69.6
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 7.8e-223 777.3 558 70.4
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 3.8e-222 775.0 564 69.7
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 5.6e-221 771.2 544 72.1
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 2.8e-220 768.8 601 66.6
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 5.2e-219 764.6 557 72.7
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 3.7e-217 758.4 485 78.8
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 1.7e-214 749.6 552 70.5
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 1.2e-210 736.9 443 81.0
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 7.5e-210 734.2 489 74.8
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 9.8e-210 733.8 492 73.0
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 5.4e-208 728.0 593 65.4
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 5.2e-203 711.4 499 71.7
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 7.1e-200 701.0 511 67.1
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 1.0e-198 697.2 440 77.7
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 2.1e-196 689.5 490 71.8
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 3.1e-195 685.6 503 67.0
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 1.9e-192 676.4 562 63.9
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 2.4e-187 659.4 581 61.8
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 3.2e-184 649.0 485 63.1
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 5.4e-184 648.3 508 64.0
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 3.5e-183 645.6 502 64.7
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 1.7e-182 643.3 446 69.3
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 4.3e-181 638.6 474 67.7
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 7.3e-181 637.9 507 67.5
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 1.4e-171 607.1 423 70.2
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 1.8e-171 606.7 555 58.9
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 8.2e-164 581.3 455 68.8
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 2.0e-162 576.6 343 85.1
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 2.9e-153 546.2 494 55.5
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 3.0e-150 536.2 490 56.7
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 3.9e-150 535.8 372 75.8
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 9.1e-147 524.6 322 82.3
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 4.2e-136 489.2 322 75.5
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 1.0e-134 484.6 293 84.0
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 2.6e-130 469.9 478 47.5
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 1.6e-119 434.1 271 81.9
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 2.3e-113 413.7 443 52.4
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.7e-108 397.5 395 59.0
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 9.5e-104 381.7 259 73.4
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 4.7e-103 379.4 227 83.3
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 2.1e-95 354.0 215 78.6
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 6.6e-89 332.4 215 74.9
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 3.6e-87 326.6 205 81.5
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 7.5e-85 318.9 215 69.8
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 2.7e-82 310.5 188 83.0
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 1.7e-81 307.8 215 69.8
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 5.1e-73 279.6 480 36.7
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 9.6e-64 248.8 137 78.8
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 3.5e-58 230.3 139 81.3
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 7.4e-56 222.6 241 52.7
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 1.7e-52 211.5 247 49.0
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 3.9e-49 200.3 436 31.2
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 8.7e-41 172.6 89 86.5
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 8.7e-41 172.6 89 86.5
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 1.9e-40 171.4 353 33.7
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 2.8e-39 167.5 136 63.2
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 3.2e-35 154.1 146 57.5
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 1.4e-30 138.7 123 61.0
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 3.0e-25 120.9 148 50.0
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 1.1e-24 119.0 69 78.3
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 2.2e-23 114.8 114 57.9
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 3.1e-22 110.9 66 86.4
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 2.6e-21 107.8 138 46.4
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 1.7e-20 105.1 119 47.9
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 2.2e-20 104.8 120 49.2
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 3.8e-20 104.0 89 59.6
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 2.5e-19 101.3 52 90.4
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 4.2e-19 100.5 68 75.0
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 3.0e-17 94.4 103 54.4
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 3.0e-17 94.4 57 82.5
Phvul.009G129001 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 3.7e-15 87.4 94 51.1
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.4e-14 85.5 64 65.6
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 3.2e-11 74.3 61 63.9
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 4.0e-09 67.4 46 73.9
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 1.7e-07 62.0 72 47.2
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 2.2e-07 61.6 51 58.8
GSVIVG01015375001 Vitis vinifera HOM05D002381 ORTHO05D002480 2.8e-07 61.2 132 34.1
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 8.3e-07 59.7 58 56.9
arahy.Tifrunner.gnm1.ann1.PGR81E Arachis hypogaea HOM05D004684 ORTHO05D082538 5.3e-06 57.0 43 60.5
BcaC06g35681 Brassica carinata HOM05D004684 ORTHO05D008836 5.3e-06 57.0 38 65.8


User provided reference genes

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