Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 1.7e-229 799.3 502 100.0
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 1.8e-173 613.2 566 70.0
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 4.1e-98 362.8 392 76.0
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 4.3e-87 326.2 395 71.1
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 2.1e-73 280.8 371 53.4
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 3.5e-73 280.0 448 48.0
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 2.0e-60 237.7 448 45.5
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 3.8e-59 233.4 461 44.5
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 1.3e-56 224.9 331 48.3
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 2.5e-55 220.7 460 44.3
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 9.6e-55 218.8 361 44.0
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 4.2e-50 203.4 428 42.3
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 2.1e-49 201.1 431 42.9
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 6.0e-49 199.5 357 45.4
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 1.5e-47 194.9 322 46.3
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 7.4e-47 192.6 324 46.6
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 3.1e-45 187.2 452 39.6
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 1.2e-44 185.3 454 40.5
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 4.5e-44 183.3 311 46.6
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 5.8e-44 183.0 315 46.7
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 7.6e-44 182.6 453 40.2
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 1.7e-43 181.4 313 41.9
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 3.8e-43 180.3 320 44.1
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 1.2e-41 175.3 432 40.7
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 7.9e-41 172.6 289 47.8
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 1.8e-40 171.4 457 37.4
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 3.0e-40 170.6 320 38.4
FvH4_4g04670 Fragaria vesca HOM05D006910 ORTHO05D008937 6.7e-40 169.5 310 44.8
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 8.7e-40 169.1 310 44.8
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 8.7e-40 169.1 307 43.3
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 8.7e-40 169.1 309 44.3
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 1.9e-39 167.9 314 44.3
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 3.3e-39 167.2 333 42.9
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 7.4e-39 166.0 319 43.3
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 1.3e-38 165.2 465 37.4
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.1e-37 162.2 451 39.2
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 4.1e-37 160.2 465 34.6
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 4.1e-37 160.2 302 44.7
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 9.0e-37 159.1 316 41.8
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 1.3e-35 155.2 317 42.6
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 2.2e-35 154.5 330 40.9
TWI53G1612 Tripterygium wilfordii HOM05D006910 ORTHO05D008937 2.2e-35 154.5 291 44.0
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 2.9e-35 154.1 331 41.1
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 2.9e-35 154.1 320 35.9
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 8.5e-35 152.5 317 42.3
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 1.1e-34 152.1 297 41.8
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 1.4e-34 151.8 307 42.0
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 3.2e-34 150.6 294 41.5
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 3.2e-34 150.6 332 39.5
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 7.2e-34 149.4 326 39.9
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 7.2e-34 149.4 323 40.6
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 7.9e-33 146.0 246 46.7
Rhsim02G0044100 Rhododendron simsii HOM05D006910 ORTHO05D008937 7.9e-33 146.0 436 38.3
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 5.1e-32 143.3 218 48.6
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 1.1e-31 142.1 326 37.7
Medtr1g073230 Medicago truncatula HOM05D006910 ORTHO05D008937 1.5e-31 141.7 322 39.4
Sc13g0003110 Simmondsia chinensis HOM05D006910 ORTHO05D008937 2.0e-31 141.4 271 41.7
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 2.0e-31 141.4 315 39.4
Psat6g131280 Pisum sativum HOM05D006910 ORTHO05D008937 1.3e-30 138.7 305 39.3
arahy.Tifrunner.gnm1.ann1.YFRU1Z Arachis hypogaea HOM05D006910 ORTHO05D008937 2.2e-30 137.9 347 36.3
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 4.8e-30 136.7 345 35.7
EL10Ac3g06675 Beta vulgaris HOM05D006910 ORTHO05D008937 4.8e-30 136.7 306 41.8
Peaxi162Scf01044g00225 Petunia axillaris HOM05D006910 ORTHO05D008937 5.3e-29 133.3 318 39.3
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 6.9e-29 132.9 325 33.5
arahy.Tifrunner.gnm1.ann1.DX8ZNF Arachis hypogaea HOM05D006910 ORTHO05D008937 2.6e-28 131.0 347 35.4
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 4.5e-28 130.2 307 39.7
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 1.4e-26 125.2 301 39.5
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 1.9e-26 124.8 280 35.4
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 2.5e-26 124.4 319 36.1
Ah.13g074730 Amaranthus hybridus HOM05D006910 ORTHO05D008937 4.2e-26 123.6 300 39.3
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 4.2e-26 123.6 297 39.4
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 1.6e-25 121.7 292 38.4
A10p02950 Brassica napus HOM05D006910 ORTHO05D008937 2.7e-25 120.9 321 31.2
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 2.7e-25 120.9 325 37.2
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 2.7e-25 120.9 306 37.3
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 3.6e-25 120.6 312 40.1
BraA10t42564Z Brassica rapa HOM05D006910 ORTHO05D008937 6.1e-25 119.8 305 32.1
ClCG05G003960 Citrullus lanatus HOM05D006910 ORTHO05D008937 1.4e-24 118.6 296 35.8
C05p02700 Brassica napus HOM05D006910 ORTHO05D008937 1.8e-24 118.2 299 32.8
unitig_748.g8295 Utricularia gibba HOM05D006910 ORTHO05D008937 1.8e-24 118.2 422 33.9
Lalb_Chr06g0169541 Lupinus albus HOM05D006910 ORTHO05D008937 2.3e-24 117.9 188 43.6
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 1.1e-23 115.5 425 33.9
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 2.0e-23 114.8 299 33.1
Ca_09799_v3 Cicer arietinum L. HOM05D006910 ORTHO05D008937 2.6e-23 114.4 325 36.9
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 5.7e-23 113.2 310 35.5
MELO3C006372.2 Cucumis melo HOM05D006910 ORTHO05D008937 7.4e-23 112.8 318 37.4
BolC5t29051H Brassica oleracea HOM05D006910 ORTHO05D008937 9.7e-23 112.5 310 32.3
CsaV3_3G011640 Cucumis sativus L. HOM05D006910 ORTHO05D008937 9.7e-23 112.5 297 32.3
Nitab4.5_0002210g0060 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.3e-22 112.1 302 32.1
Lsat_1_v5_gn_1_75580 Lactuca sativa HOM05D006910 ORTHO05D008937 4.8e-22 110.2 280 40.4
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 4.8e-22 110.2 333 32.4
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 6.3e-22 109.8 327 33.3
Sp1g03360 Schrenkiella parvula HOM05D006910 ORTHO05D008937 4.1e-21 107.1 313 31.0
ECA248G3309 Erigeron canadensis HOM05D006910 ORTHO05D008937 1.2e-20 105.5 174 50.0
Carub.0001s0374 Capsella rubella HOM05D006910 ORTHO05D008937 2.0e-20 104.8 300 30.7
THA.LOC104801064 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 2.6e-20 104.4 305 29.5
HanXRQChr01g0023021 Helianthus annuus HOM05D006910 ORTHO05D008937 4.5e-20 103.6 176 48.3
CARHR003870 Cardamine hirsuta HOM05D006910 ORTHO05D008937 7.7e-20 102.8 319 30.1
Thhalv10008199m.g Eutrema salsugineum HOM05D006910 ORTHO05D008937 5.0e-19 100.1 330 29.1
Sed0015418 Sechium edule HOM05D006910 ORTHO05D008937 5.0e-19 100.1 290 37.9
TPR.G18548 Trifolium pratense HOM05D006910 ORTHO05D008937 5.0e-19 100.1 332 31.9
AL1G14180 Arabidopsis lyrata HOM05D006910 ORTHO05D008937 8.5e-19 99.4 325 29.2
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 3.2e-18 97.4 366 34.2
PSO675G2181 Papaver somniferum HOM05D007706 ORTHO05D009593 3.2e-18 97.4 206 35.9
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 2.7e-17 94.4 308 30.5
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 2.7e-17 94.4 281 37.0
Lsat_1_v5_gn_6_66101 Lactuca sativa HOM05D006910 ORTHO05D008937 4.7e-17 93.6 178 36.5
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 4.7e-17 93.6 306 37.9
Hma1.2p1_0366F.1_g136940 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 8.0e-17 92.8 155 40.0
Aa31LG1G20340 Aethionema arabicum HOM05D006910 ORTHO05D008937 1.0e-16 92.4 195 34.9
Sabra13G0020900 Salix brachista HOM05D000307 ORTHO05D000166 2.3e-16 91.3 53 81.1
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 3.0e-16 90.9 97 49.5
VMungo1383G0992 Vigna mungo HOM05D007706 ORTHO05D009593 8.8e-16 89.4 290 33.8
Glyma.19G168300 Glycine max HOM05D007706 ORTHO05D009593 4.4e-15 87.0 291 32.0
AT1G04530 Arabidopsis thaliana HOM05D006910 ORTHO05D008937 5.7e-15 86.7 207 33.8
SalBow2G0872 Salvia bowleyana HOM05D006910 ORTHO05D008937 7.4e-15 86.3 316 29.4
AUR62018038 Chenopodium quinoa HOM05D006910 ORTHO05D008937 1.3e-14 85.5 224 39.7
Glyma.03G167200 Glycine max HOM05D007706 ORTHO05D009593 1.1e-13 82.4 298 32.2
THA.LOC104826095 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 2.4e-13 81.3 230 33.5
Lsat_1_v5_gn_8_92000 Lactuca sativa HOM05D007706 ORTHO05D009593 1.6e-12 78.6 283 32.5
Sabra02G0195300 Salix brachista HOM05D007706 ORTHO05D009593 3.5e-12 77.4 295 31.5
Nitab4.5_0000209g0150 Nicotiana tabacum HOM05D001903 ORTHO05D001847 2.9e-11 74.3 154 35.7
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 3.8e-11 73.9 278 34.5
TWI12G0795 Tripterygium wilfordii HOM05D007706 ORTHO05D009593 6.5e-11 73.2 286 31.5
CiPaw.04G190500 Carya illinoinensis HOM05D007706 ORTHO05D009593 2.5e-10 71.2 301 31.9
Cc01_g17810 Coffea canephora HOM05D007706 ORTHO05D009593 4.2e-10 70.5 293 32.4
MBI02_g19811_MAGBIO Magnolia biondii HOM05D006910 ORTHO05D025782 4.2e-10 70.5 77 42.9
Dinv16399 Davidia involucrata HOM05D007706 ORTHO05D009593 7.2e-10 69.7 297 31.6
Lj2C1142T11 Lonicera japonica HOM05D007706 ORTHO05D009593 7.2e-10 69.7 296 32.1
EL10Ac2g04227 Beta vulgaris HOM05D001903 ORTHO05D001847 1.6e-09 68.6 85 41.2
Potri.002G256900 Populus trichocarpa HOM05D007706 ORTHO05D009593 1.6e-09 68.6 295 30.8
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 2.1e-09 68.2 290 29.0
Hma1.2p1_1930F.1_g307940 Hydrangea macrophylla HOM05D007706 ORTHO05D009593 2.7e-09 67.8 295 30.8
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 3.6e-09 67.4 107 41.1
BolC8t52749H Brassica oleracea HOM05D006910 ORTHO05D008937 3.6e-09 67.4 78 44.9
C08p52150 Brassica napus HOM05D006910 ORTHO05D008937 4.7e-09 67.0 82 43.9
Manes.12G037850 Manihot esculenta HOM05D007706 ORTHO05D009593 6.1e-09 66.6 303 27.4
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 8.0e-09 66.2 306 30.4
CSS0007043 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 8.0e-09 66.2 44 65.9
SMO118G0200 Selaginella moellendorffii HOM05D006910 ORTHO05D008937 1.0e-08 65.9 69 47.8
Os04g0496700 Oryza sativa ssp. japonica HOM05D001903 ORTHO05D001847 1.8e-08 65.1 73 46.6
Nitab4.5_0008073g0040 Nicotiana tabacum HOM05D009844 ORTHO05D007252 1.2e-07 62.4 46 63.0
Gorai.010G137200 Gossypium raimondii HOM05D001903 ORTHO05D001847 1.5e-07 62.0 114 36.0
Cpa.g.sc10.261 Carica papaya HOM05D001903 ORTHO05D001847 2.6e-07 61.2 157 32.5
Gohir.D06G119399 Gossypium hirsutum HOM05D001903 ORTHO05D001847 2.6e-07 61.2 112 36.6
Hund26517 Selenicereus undatus HOM05D001903 ORTHO05D001847 2.6e-07 61.2 101 35.6
CDE05G1228 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 7.5e-07 59.7 36 72.2
Dinv34676 Davidia involucrata HOM05D007706 ORTHO05D009593 9.7e-07 59.3 308 29.5
Rhsim03G0248500 Rhododendron simsii HOM05D001903 ORTHO05D001847 9.7e-07 59.3 74 43.2
HanXRQChr04g0108691 Helianthus annuus HOM05D007706 ORTHO05D009593 2.2e-06 58.2 286 28.0
Sabra06G0198700 Salix brachista HOM05D001903 ORTHO05D001847 2.2e-06 58.2 89 37.1
AUR62012392 Chenopodium quinoa HOM05D001903 ORTHO05D001847 3.7e-06 57.4 59 50.8
SEGI_24294 Sequoiadendron giganteum HOM05D006910 ORTHO05D008937 3.7e-06 57.4 44 59.1
Nitab4.5_0000373g0030 Nicotiana tabacum HOM05D001903 ORTHO05D001847 4.8e-06 57.0 74 43.2
Actinidia11375 Actinidia chinensis HOM05D006910 ORTHO05D008937 6.3e-06 56.6 45 64.4


User provided reference genes

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