Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 4.0e-66 254.6 128 100.0
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 9.0e-58 226.9 128 88.3
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 1.2e-57 226.5 127 87.4
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 2.6e-57 225.3 132 85.6
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.6e-54 216.1 128 85.2
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 6.0e-54 214.2 127 82.7
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 7.9e-54 213.8 128 82.8
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 7.9e-54 213.8 128 81.2
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 7.9e-54 213.8 128 83.6
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 2.3e-53 212.2 130 83.1
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 2.3e-53 212.2 128 83.6
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 5.1e-53 211.1 128 80.5
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 5.1e-53 211.1 128 85.2
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 1.5e-52 209.5 129 82.2
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 3.3e-52 208.4 131 80.9
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 7.4e-52 207.2 128 82.8
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 1.3e-51 206.5 128 82.8
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 1.6e-51 206.1 128 79.7
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 1.6e-51 206.1 128 79.7
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 2.1e-51 205.7 128 79.7
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 8.2e-51 203.8 128 81.2
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 1.1e-50 203.4 128 80.5
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 6.9e-50 200.7 129 79.8
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 9.0e-50 200.3 130 80.8
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 1.5e-49 199.5 128 76.6
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 2.6e-49 198.7 128 73.4
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 4.5e-49 198.0 128 78.1
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 5.8e-49 197.6 128 75.8
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 7.6e-49 197.2 130 79.2
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 7.6e-49 197.2 130 78.5
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 1.0e-48 196.8 128 75.8
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 1.0e-48 196.8 131 79.4
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 2.2e-48 195.7 128 78.1
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 2.2e-48 195.7 131 77.9
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 2.2e-48 195.7 130 79.2
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 2.2e-48 195.7 123 77.2
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 3.8e-48 194.9 128 79.7
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 5.0e-48 194.5 128 77.3
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 8.4e-48 193.7 128 77.3
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 2.5e-47 192.2 128 73.4
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 3.2e-47 191.8 128 74.2
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 4.2e-47 191.4 130 75.4
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 4.2e-47 191.4 128 76.6
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 4.2e-47 191.4 128 77.3
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 5.5e-47 191.0 128 75.8
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 5.5e-47 191.0 131 74.8
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 9.3e-47 190.3 131 76.3
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 9.3e-47 190.3 129 76.7
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.6e-46 189.5 129 74.4
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 1.6e-46 189.5 130 76.2
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 1.6e-46 189.5 126 74.6
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 1.6e-46 189.5 126 74.6
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 3.5e-46 188.3 128 75.0
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 4.6e-46 188.0 130 77.7
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 6.1e-46 187.6 131 74.8
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 1.8e-45 186.0 128 72.7
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 1.8e-45 186.0 129 75.2
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 2.3e-45 185.7 130 75.4
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 3.0e-45 185.3 128 74.2
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 3.9e-45 184.9 129 76.0
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 8.7e-45 183.7 134 72.4
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.5e-44 183.0 128 75.8
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.5e-44 183.0 128 75.8
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 1.5e-44 183.0 126 75.4
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 3.3e-44 181.8 129 73.6
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 4.3e-44 181.4 130 74.6
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 4.3e-44 181.4 130 74.6
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 4.3e-44 181.4 129 72.9
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 5.7e-44 181.0 129 73.6
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 5.7e-44 181.0 129 73.6
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 5.7e-44 181.0 129 73.6
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 9.7e-44 180.3 133 72.2
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 9.7e-44 180.3 130 72.3
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 2.8e-43 178.7 118 75.4
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 3.7e-43 178.3 128 74.2
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 8.2e-43 177.2 132 70.5
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 8.2e-43 177.2 125 72.8
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 1.4e-42 176.4 132 69.7
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 1.4e-42 176.4 133 69.2
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 1.4e-42 176.4 133 69.2
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 1.4e-42 176.4 131 71.8
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 1.8e-42 176.0 129 73.6
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 2.4e-42 175.6 116 78.4
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 4.1e-42 174.9 134 71.6
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 4.1e-42 174.9 128 71.1
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 5.3e-42 174.5 132 71.2
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 5.3e-42 174.5 132 71.2
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 5.3e-42 174.5 126 73.8
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 5.3e-42 174.5 132 72.7
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 6.9e-42 174.1 132 73.5
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 9.0e-42 173.7 132 69.7
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.2e-41 173.3 132 73.5
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 2.0e-41 172.6 126 73.0
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 2.0e-41 172.6 132 69.7
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 3.4e-41 171.8 128 68.8
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 5.9e-41 171.0 114 73.7
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 5.9e-41 171.0 132 68.2
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 5.9e-41 171.0 132 68.2
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 5.9e-41 171.0 132 68.2
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 7.7e-41 170.6 131 71.8
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.7e-40 169.5 129 71.3
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 2.9e-40 168.7 131 71.0
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.8e-40 168.3 128 68.0
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 5.0e-40 167.9 129 69.0
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 1.1e-39 166.8 131 71.8
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.1e-39 166.8 104 79.8
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 1.4e-39 166.4 128 65.6
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 3.2e-39 165.2 133 66.2
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 3.2e-39 165.2 124 64.5
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 4.2e-39 164.9 116 72.4
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 1.2e-38 163.3 96 82.3
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 2.1e-38 162.5 131 68.7
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 2.1e-38 162.5 128 65.6
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 3.6e-38 161.8 115 74.8
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.8e-37 159.5 128 66.4
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.8e-37 159.5 128 66.4
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 3.9e-37 158.3 96 81.2
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 6.7e-37 157.5 103 76.7
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 1.5e-36 156.4 110 72.7
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 1.5e-36 156.4 129 66.7
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 2.5e-36 155.6 110 70.9
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 5.7e-36 154.5 114 68.4
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 7.4e-36 154.1 115 68.7
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 7.4e-36 154.1 110 71.8
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 4.8e-35 151.4 130 65.4
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 8.2e-35 150.6 110 70.0
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 1.1e-34 150.2 108 63.9
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 1.2e-33 146.7 123 65.9
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 5.0e-32 141.4 93 73.1
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 1.4e-31 139.8 87 77.0
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 2.5e-31 139.0 114 63.2
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 3.2e-31 138.7 127 59.8
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 1.2e-30 136.7 116 62.9
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 3.6e-30 135.2 113 57.5
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 6.1e-30 134.4 94 74.5
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.6e-28 129.0 93 71.0
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 5.7e-28 127.9 128 57.0
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 5.7e-28 127.9 78 80.8
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 7.4e-28 127.5 131 57.3
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 1.7e-27 126.3 83 73.5
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 4.8e-27 124.8 124 58.9
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 9.1e-26 120.6 122 57.4
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 3.8e-24 115.2 95 63.2
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.5e-23 113.2 69 82.6
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 8.8e-21 104.0 128 54.7
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 1.1e-20 103.6 104 56.7
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 4.4e-20 101.7 72 70.8
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 4.8e-19 98.2 78 67.9
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 1.8e-18 96.3 82 56.1
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 3.5e-17 92.0 94 56.4
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.7e-16 89.7 46 95.7
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.1e-15 87.0 69 68.1
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 2.1e-14 82.8 67 58.2
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 4.0e-13 78.6 68 55.9
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 8.0e-06 54.3 65 46.2


User provided reference genes

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